mRNA_H-fluviatilis_contig100794.230.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-fluviatilis_contig100794.230.1 vs. uniprot
Match: A0A6H5KXM6_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM6_9PHAE) HSP 1 Score: 166 bits (419), Expect = 3.850e-43 Identity = 118/271 (43.54%), Postives = 146/271 (53.87%), Query Frame = 1 Query: 1 VIFTHLFSAPLTELEMAKGGSGCQVPKAVPELSYQGERETLVRTLTESKKAIQFMSEAANTGSFARAVGCPNEPTTRDSSSYPRSSSEPGPAGLSESVRSCR------------------------DGECRMLHFTGHAQPGKLTFEDKYGQLQYIDEAHLLAMLRCKKKPVDDGSFGTETTSPQRGCTPARSAELSPRGSSDDRDDGAMGGGYALFEDTSNNIPALDIVEGSPEKEKEAAAADKASRSGLQLVFLSSCHSASLAQVFIEA 741
VIFTHLFSAPL E +MA GGSG + + V +LSY+ ER+TL RTL + K ++F+SEAANT SFARAVGC P+ P +S PG G S S S + ECR++HFTGH PG+LTFED GQLQY+ EA LL+ML +K GS G S + PA +A G +G FE P +D+ E S E E + A R+GLQLVFLSSCHS S+A+ FIEA
Sbjct: 49 VIFTHLFSAPLVEQKMAPGGSGSVLVEKVDKLSYEEERDTLHRTLDNADKRVRFLSEAANTRSFARAVGCRVPPS-------PPRASRPGSVGSSLSAGSMXXXXXXXXXXXXXXXXXGDASAAEGERECRIVHFTGHGVPGELTFEDDSGQLQYVGEAELLSMLLRGRKESGGGS-GXXXGSRKHLGMPAHAAAAPAAAPVPGCYAGELG-----FEGGIGYAPFVDVSE-SVEPEARLGGGEGAPRTGLQLVFLSSCHSQSVAKCFIEA 305 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100794.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig100794.230.1 >prot_H-fluviatilis_contig100794.230.1 ID=prot_H-fluviatilis_contig100794.230.1|Name=mRNA_H-fluviatilis_contig100794.230.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=247bp VIFTHLFSAPLTELEMAKGGSGCQVPKAVPELSYQGERETLVRTLTESKKback to top mRNA from alignment at H-fluviatilis_contig100794:39..815- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig100794.230.1 ID=mRNA_H-fluviatilis_contig100794.230.1|Name=mRNA_H-fluviatilis_contig100794.230.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=777bp|location=Sequence derived from alignment at H-fluviatilis_contig100794:39..815- (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig100794:39..815- >mRNA_H-fluviatilis_contig100794.230.1 ID=mRNA_H-fluviatilis_contig100794.230.1|Name=mRNA_H-fluviatilis_contig100794.230.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1482bp|location=Sequence derived from alignment at H-fluviatilis_contig100794:39..815- (Heribaudiella fluviatilis SAG_13_90)back to top |