mRNA_H-fluviatilis_contig10079.226.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10079.226.1
Unique NamemRNA_H-fluviatilis_contig10079.226.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10079.226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10079contigH-fluviatilis_contig10079:684..1041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size298
Cds size258
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10079.226.1prot_H-fluviatilis_contig10079.226.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10079 684..1002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.3804147-CDS-H-fluviatilis_contig10079:683..7231622929021.3804147-CDS-H-fluviatilis_contig10079:683..723Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 684..723 +
1691135152.7674844-CDS-H-fluviatilis_contig10079:683..7231691135152.7674844-CDS-H-fluviatilis_contig10079:683..723Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 684..723 +
1622929021.4024422-CDS-H-fluviatilis_contig10079:753..8391622929021.4024422-CDS-H-fluviatilis_contig10079:753..839Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 754..839 +
1691135152.775642-CDS-H-fluviatilis_contig10079:753..8391691135152.775642-CDS-H-fluviatilis_contig10079:753..839Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 754..839 +
1622929021.4199533-CDS-H-fluviatilis_contig10079:870..10021622929021.4199533-CDS-H-fluviatilis_contig10079:870..1002Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 871..1002 +
1691135152.7853062-CDS-H-fluviatilis_contig10079:870..10021691135152.7853062-CDS-H-fluviatilis_contig10079:870..1002Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 871..1002 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.4321196-UTR-H-fluviatilis_contig10079:1002..10411622929021.4321196-UTR-H-fluviatilis_contig10079:1002..1041Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 1003..1041 +
1691135152.7969296-UTR-H-fluviatilis_contig10079:1002..10411691135152.7969296-UTR-H-fluviatilis_contig10079:1002..1041Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 1003..1041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10079.226.1

>prot_H-fluviatilis_contig10079.226.1 ID=prot_H-fluviatilis_contig10079.226.1|Name=mRNA_H-fluviatilis_contig10079.226.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=86bp
YTACFSLSRLQAAGINATSALSLLENAVASDTNRYTRGFAYQALVGLQSS
TVSSSVPGSASEARLRARHLINSRFCPITTVGDEF*
back to top

mRNA from alignment at H-fluviatilis_contig10079:684..1041+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10079.226.1 ID=mRNA_H-fluviatilis_contig10079.226.1|Name=mRNA_H-fluviatilis_contig10079.226.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=358bp|location=Sequence derived from alignment at H-fluviatilis_contig10079:684..1041+ (Heribaudiella fluviatilis SAG_13_90)
TACACCGCTTGCTTCTCACTCAGTCGGCTACAAGCCGCAGGTCAGCAACG
TTGGCTCGTGACTTGATCAGGAATCAATGCGACTTCCGCGTTGTCGCTGT
TGGAGAATGCCGTTGCTTCCGACACCAACCGCTACACACGTGGGTTTGCT
TACCAGGTTTGCGCGGTCCGTTGCATTCGTTCTCCAGGCCTTGGTCGGCT
TGCAGTCGTCGACCGTGTCTTCATCGGTGCCTGGGAGCGCCAGCGAGGCG
CGCTTGCGGGCAAGGCATTTAATCAACTCCCGTTTCTGCCCTATCACAAC
GGTCGGCGATGAATTCTGATTTGGTTTTGGGTTCTGCGAAACGGCTTGAA
ATCACAAC
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig10079:684..1041+

>mRNA_H-fluviatilis_contig10079.226.1 ID=mRNA_H-fluviatilis_contig10079.226.1|Name=mRNA_H-fluviatilis_contig10079.226.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=516bp|location=Sequence derived from alignment at H-fluviatilis_contig10079:684..1041+ (Heribaudiella fluviatilis SAG_13_90)
TACACCGCTTGCTTCTCACTCAGTCGGCTACAAGCCGCAGTACACCGCTT
GCTTCTCACTCAGTCGGCTACAAGCCGCAGGAATCAATGCGACTTCCGCG
TTGTCGCTGTTGGAGAATGCCGTTGCTTCCGACACCAACCGCTACACACG
TGGGTTTGCTTACCAGGAATCAATGCGACTTCCGCGTTGTCGCTGTTGGA
GAATGCCGTTGCTTCCGACACCAACCGCTACACACGTGGGTTTGCTTACC
AGGCCTTGGTCGGCTTGCAGTCGTCGACCGTGTCTTCATCGGTGCCTGGG
AGCGCCAGCGAGGCGCGCTTGCGGGCAAGGCATTTAATCAACTCCCGTTT
CTGCCCTATCACAACGGTCGGCGATGAATTCTGAGCCTTGGTCGGCTTGC
AGTCGTCGACCGTGTCTTCATCGGTGCCTGGGAGCGCCAGCGAGGCGCGC
TTGCGGGCAAGGCATTTAATCAACTCCCGTTTCTGCCCTATCACAACGGT
CGGCGATGAATTCTGA
back to top