mRNA_H-fluviatilis_contig10066.200.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10066.200.1
Unique NamemRNA_H-fluviatilis_contig10066.200.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10066.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10066contigH-fluviatilis_contig10066:87..422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929018.2569983-CDS-H-fluviatilis_contig10066:86..4221622929018.2569983-CDS-H-fluviatilis_contig10066:86..422Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10066 87..422 +
1691135151.77042-CDS-H-fluviatilis_contig10066:86..4221691135151.77042-CDS-H-fluviatilis_contig10066:86..422Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10066 87..422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10066.200.1prot_H-fluviatilis_contig10066.200.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10066 87..422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10066.200.1

>prot_H-fluviatilis_contig10066.200.1 ID=prot_H-fluviatilis_contig10066.200.1|Name=mRNA_H-fluviatilis_contig10066.200.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=112bp
MPFRYETPLLTGKRDTGTSSESKLTSVTNPLRTGQRTLDSYPQIFSFAHV
SRRDNLAATSTVQSLQIYYLQHHNRLPIVFHKQMMTQCITSERCIWMSDL
SPISISSSFPSP
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mRNA from alignment at H-fluviatilis_contig10066:87..422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10066.200.1 ID=mRNA_H-fluviatilis_contig10066.200.1|Name=mRNA_H-fluviatilis_contig10066.200.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=336bp|location=Sequence derived from alignment at H-fluviatilis_contig10066:87..422+ (Heribaudiella fluviatilis SAG_13_90)
ATGCCATTTAGATATGAAACCCCTCTCCTAACCGGCAAAAGAGATACCGG
CACATCGTCAGAAAGCAAGCTAACATCCGTCACGAATCCCCTCAGGACAG
GGCAACGAACCTTAGACTCGTATCCTCAGATCTTTTCTTTTGCCCATGTC
TCCAGACGCGACAATCTAGCCGCGACTTCAACGGTCCAATCGCTACAAAT
ATATTATCTTCAACATCATAACCGCCTCCCTATAGTTTTCCACAAACAAA
TGATGACACAATGTATTACCTCGGAGAGATGCATATGGATGTCCGATCTC
TCCCCGATATCAATCTCCTCGTCATTCCCTTCTCCA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10066:87..422+

>mRNA_H-fluviatilis_contig10066.200.1 ID=mRNA_H-fluviatilis_contig10066.200.1|Name=mRNA_H-fluviatilis_contig10066.200.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=672bp|location=Sequence derived from alignment at H-fluviatilis_contig10066:87..422+ (Heribaudiella fluviatilis SAG_13_90)
ATGCCATTTAGATATGAAACCCCTCTCCTAACCGGCAAAAGAGATACCGG
CACATCGTCAGAAAGCAAGCTAACATCCGTCACGAATCCCCTCAGGACAG
GGCAACGAACCTTAGACTCGTATCCTCAGATCTTTTCTTTTGCCCATGTC
TCCAGACGCGACAATCTAGCCGCGACTTCAACGGTCCAATCGCTACAAAT
ATATTATCTTCAACATCATAACCGCCTCCCTATAGTTTTCCACAAACAAA
TGATGACACAATGTATTACCTCGGAGAGATGCATATGGATGTCCGATCTC
TCCCCGATATCAATCTCCTCGTCATTCCCTTCTCCAATGCCATTTAGATA
TGAAACCCCTCTCCTAACCGGCAAAAGAGATACCGGCACATCGTCAGAAA
GCAAGCTAACATCCGTCACGAATCCCCTCAGGACAGGGCAACGAACCTTA
GACTCGTATCCTCAGATCTTTTCTTTTGCCCATGTCTCCAGACGCGACAA
TCTAGCCGCGACTTCAACGGTCCAATCGCTACAAATATATTATCTTCAAC
ATCATAACCGCCTCCCTATAGTTTTCCACAAACAAATGATGACACAATGT
ATTACCTCGGAGAGATGCATATGGATGTCCGATCTCTCCCCGATATCAAT
CTCCTCGTCATTCCCTTCTCCA
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