mRNA_H-fluviatilis_contig100641.195.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100641.195.1
Unique NamemRNA_H-fluviatilis_contig100641.195.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Match: R1E9A4_EMIHU (UBC core domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=R1E9A4_EMIHU)

HSP 1 Score: 200 bits (509), Expect = 6.160e-63
Identity = 86/146 (58.90%), Postives = 115/146 (78.77%), Query Frame = 1
Query:   58 AANKRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKGVFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAISMDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYA 495
            AA KRINKEL++L+K PP  C A  VGDD+FHW +++MGP +SPYE G+F L+I FP DYPFKPPKV F TK+YHCNVN  G +C+ IL+ +WSPA+++ KVL  +  LL +PNPDDPL+ +IA+ +K+ +  +D+TAKEWT+KYA
Sbjct:    2 AATKRINKELQDLTKDPPSTCSAGPVGDDLFHWQSTIMGPKESPYEGGIFFLNINFPSDYPFKPPKVTFTTKIYHCNVNSNGSICLDILQSQWSPALTVSKVLLSVCSLLTDPNPDDPLVPEIARLYKQDRGKHDETAKEWTRKYA 147          
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Match: A0A6A7G3H5_9CRUS (Ubiquitin-conjugating enzyme 2 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G3H5_9CRUS)

HSP 1 Score: 200 bits (509), Expect = 1.040e-62
Identity = 87/146 (59.59%), Postives = 114/146 (78.08%), Query Frame = 1
Query:   61 ANKRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKGVFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAISMDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYAQ 498
            A KRINKEL++L K PP  C A  +GDD+F W A++MGPP SPY+ GVF L+I FP DYPFKPPKV F+TK+YHCNVN+KG +C+ ILKD WSPA+++ KVL  +  LL +PNPDDPL+ +IA +FK ++  +D+ A EWT+K+AQ
Sbjct:   19 ALKRINKELQDLGKDPPANCSAGPIGDDLFRWQATIMGPPDSPYDGGVFFLEIHFPNDYPFKPPKVKFQTKIYHCNVNDKGGICLDILKDNWSPALTISKVLLSICSLLNDPNPDDPLVPEIANKFKNNRPQHDRDAMEWTRKFAQ 164          
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Match: A0A3P3YD54_PLABS (UBC core domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YD54_PLABS)

HSP 1 Score: 198 bits (504), Expect = 3.430e-62
Identity = 86/144 (59.72%), Postives = 112/144 (77.78%), Query Frame = 1
Query:   67 KRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKGVFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAISMDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYAQ 498
            KRINKEL ++   PP  C A   GDD++ W A++MGPP SPYE GVF L I+FP+DYPFKPPKV F+TK+YHCNVN+KG +C+ ILKD WSPA+++ KVL  +  LL +PNPDDPL+ +IA  FK ++K++D+ A EWT+KYAQ
Sbjct:    4 KRINKELIDMGNDPPANCSAGPTGDDLYRWQATIMGPPNSPYEGGVFFLHIEFPQDYPFKPPKVKFQTKIYHCNVNDKGGICLDILKDNWSPALTISKVLLSICSLLTDPNPDDPLVPEIANLFKTNRKEHDRIAAEWTRKYAQ 147          
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Match: A0A7S0LRQ9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRQ9_9EUKA)

HSP 1 Score: 198 bits (503), Expect = 1.250e-61
Identity = 85/148 (57.43%), Postives = 113/148 (76.35%), Query Frame = 1
Query:   52 MAAANKRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKGVFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAISMDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYA 495
            M +A KRINKEL +L+K PP  C A  VGDD+FHW +++MGP +SPYE G+F L+I FP DYPFKPPKV F TK++HCNVN  G +C+ IL+ +WSPA+++ KVL  +  LL +PNPDDPL+ +IA+ +K ++  +D TAKEWT KYA
Sbjct:   28 MGSATKRINKELADLTKDPPSSCSAGPVGDDLFHWQSTIMGPKESPYEGGIFFLNIHFPTDYPFKPPKVQFTTKIWHCNVNNNGSICLDILQSQWSPALTISKVLLSVCSLLTDPNPDDPLVPEIARMYKSNRVQHDSTAKEWTNKYA 175          
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Match: A0A7S4C240_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C240_CHRCT)

HSP 1 Score: 197 bits (500), Expect = 2.260e-61
Identity = 86/146 (58.90%), Postives = 112/146 (76.71%), Query Frame = 1
Query:   58 AANKRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKGVFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAISMDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYA 495
            +A KRINKEL +LSK PP  C A  VGDD+FHW +++MGP  SPY+ G+F L+I FP DYPFKPPKV F+TK+YHCNVN  G +C+ IL+ +WSPA+++ KVL  +  LL +PNPDDPL+ +IAK +K  +  +D TAKEWT+KYA
Sbjct:   16 SATKRINKELSDLSKDPPSTCSAGPVGDDLFHWQSTIMGPKDSPYDGGIFFLNIHFPTDYPFKPPKVQFQTKIYHCNVNGNGSICLDILQSQWSPALTISKVLLSVCSLLTDPNPDDPLVPEIAKLYKSDRAKHDATAKEWTRKYA 161          
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Match: L8GSE6_ACACA (Ubiquitinconjugating enzyme E2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSE6_ACACA)

HSP 1 Score: 196 bits (498), Expect = 2.800e-61
Identity = 87/145 (60.00%), Postives = 111/145 (76.55%), Query Frame = 1
Query:   61 ANKRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKGVFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAISMDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYA 495
            A KRINKEL++L + PP  C A  VGDD+FHWTA++MGPP SPY+ GVF L+I FP DYPFKPPKV F TK+YH NVN  G +C+ ILKD+WSPA+++ KVL  +  LL +PNPDDPL+ +IA  +K  +  Y+ TA+EWT+KYA
Sbjct:    2 ALKRINKELQDLQRDPPTNCSAGPVGDDLFHWTATIMGPPDSPYQGGVFFLNIHFPTDYPFKPPKVSFTTKIYHPNVNGNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRSRYENTAREWTRKYA 146          
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Match: A0A6A7G9C6_9CRUS (Ubiquitin-conjugating enzyme 2 n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G9C6_9CRUS)

HSP 1 Score: 195 bits (496), Expect = 5.640e-61
Identity = 85/146 (58.22%), Postives = 115/146 (78.77%), Query Frame = 1
Query:   61 ANKRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKGVFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAISMDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYAQ 498
            A+KRINKEL++L + PP  C A  VGD++F W A++MGPP SPY  GVF L+I FP+DYPFKPPK  F+TK+YHCNVN+KG +C+ ILKD WSPA+++ KVL  +  LL +PNPDDPL+ +IA ++K ++ D+D+ A EWT+K+AQ
Sbjct:    2 ASKRINKELQDLGRDPPANCSAGPVGDNLFKWQATIMGPPDSPYAGGVFFLEIVFPQDYPFKPPKCRFQTKIYHCNVNDKGGICLDILKDNWSPALTIAKVLLSICSLLTDPNPDDPLVPEIANKYKTNRVDHDRYAAEWTRKFAQ 147          
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Match: B8C0C0_THAPS (Ubiquitin-conjugating enzyme e2-16kda, ubiquitin protein ligase n=19 Tax=Ochrophyta TaxID=2696291 RepID=B8C0C0_THAPS)

HSP 1 Score: 194 bits (493), Expect = 1.610e-60
Identity = 86/143 (60.14%), Postives = 107/143 (74.83%), Query Frame = 1
Query:   67 KRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKGVFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAISMDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYA 495
            KRINKEL +L K PP  C A  VGDD+FHW A++MGP +SPY  GVF LDI FP DYPFKPPKV F T++YHCN+N  G +C+ ILKD+WSPA+++ KVL  +  LL +PNPDDPL+ DIA+  K  +  +D TA+EWT KYA
Sbjct:    4 KRINKELVDLGKDPPANCSAGPVGDDMFHWQATIMGPDESPYAGGVFFLDIHFPADYPFKPPKVHFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPDIAQLLKTDRARHDSTAREWTSKYA 146          
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Match: A0A8B6EPA5_MYTGA (Ubiquitin-conjugating enzyme E2 D n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EPA5_MYTGA)

HSP 1 Score: 194 bits (492), Expect = 2.290e-60
Identity = 85/145 (58.62%), Postives = 110/145 (75.86%), Query Frame = 1
Query:   61 ANKRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKGVFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAISMDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYA 495
            A KR+NKEL++++  PP GC A  VGDD+F W ASL GP  SPY+ G+F L +QFP DYPFKPPKV FKTK+YH N+N  G +C+ IL+ +WSPA+++ K+L  L  L++EPNPDDPLM DIAK FK  +K Y + A+EWT+KYA
Sbjct:    2 ALKRLNKELQDITTDPPPGCSAGPVGDDLFKWEASLTGPEDSPYKDGIFFLSVQFPTDYPFKPPKVGFKTKIYHPNINSSGAICLDILRSQWSPALTVSKILLSLHALMSEPNPDDPLMPDIAKLFKTDRKKYMQNAREWTRKYA 146          
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Match: T1FM60_HELRO (UBC core domain-containing protein n=16 Tax=Protostomia TaxID=33317 RepID=T1FM60_HELRO)

HSP 1 Score: 193 bits (491), Expect = 3.240e-60
Identity = 83/145 (57.24%), Postives = 111/145 (76.55%), Query Frame = 1
Query:   61 ANKRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKGVFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAISMDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYA 495
            A KRINKEL+++SK PP GC A  VGDD+FHW A++MGPP SPY+ GVF L I FP DYPFKPPK+ F T++YH N+N  G +C+ IL+ +WSPA+++ KVL  +  LL +PNPDDPL+ +IA+ +K  K+ Y++ AK+WT KYA
Sbjct:    2 ALKRINKELQDMSKDPPAGCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKLAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLTDPNPDDPLVPEIARMYKTDKERYNQMAKDWTHKYA 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100641.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R1E9A4_EMIHU6.160e-6358.90UBC core domain-containing protein n=3 Tax=Eukaryo... [more]
A0A6A7G3H5_9CRUS1.040e-6259.59Ubiquitin-conjugating enzyme 2 (Fragment) n=1 Tax=... [more]
A0A3P3YD54_PLABS3.430e-6259.72UBC core domain-containing protein n=2 Tax=Plasmod... [more]
A0A7S0LRQ9_9EUKA1.250e-6157.43Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4C240_CHRCT2.260e-6158.90Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
L8GSE6_ACACA2.800e-6160.00Ubiquitinconjugating enzyme E2, putative n=1 Tax=A... [more]
A0A6A7G9C6_9CRUS5.640e-6158.22Ubiquitin-conjugating enzyme 2 n=1 Tax=Hirondellea... [more]
B8C0C0_THAPS1.610e-6060.14Ubiquitin-conjugating enzyme e2-16kda, ubiquitin p... [more]
A0A8B6EPA5_MYTGA2.290e-6058.62Ubiquitin-conjugating enzyme E2 D n=1 Tax=Mytilus ... [more]
T1FM60_HELRO3.240e-6057.24UBC core domain-containing protein n=16 Tax=Protos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100641contigH-fluviatilis_contig100641:97..851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue6.4e-49
Seed eggNOG ortholog2903.EOD23310
Preferred nameUBC4
KEGG rclassRC00052,RC00156
KEGG koko:K00252,ko:K06689,ko:K10746
KEGG ReactionR02487,R02488,R10074
KEGG Pathwayko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,ko03430,ko04013,ko04120,ko04141,ko04624,map00071,map00310,map00362,map00380,map01100,map01120,map01130,map03430,map04013,map04120,map04141,map04624
KEGG ModuleM00032
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000502,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006515,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007088,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010559,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010965,GO:0016485,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030071,GO:0030163,GO:0030674,GO:0031146,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031331,GO:0031399,GO:0031461,GO:0032182,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032933,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034605,GO:0035103,GO:0035966,GO:0035967,GO:0036211,GO:0042221,GO:0043130,GO:0043161,GO:0043162,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045931,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051604,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051983,GO:0051984,GO:0060049,GO:0060090,GO:0060255,GO:0061631,GO:0061650,GO:0062033,GO:0065007,GO:0070647,GO:0070887,GO:0071218,GO:0071310,GO:0071501,GO:0071629,GO:0071704,GO:0080090,GO:0090068,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902680,GO:1903018,GO:1903052,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2001141,GO:2001252
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
EC1.3.8.6,2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons6
Model size581
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100641.195.1prot_H-fluviatilis_contig100641.195.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100641 177..771 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.5489554-UTR-H-fluviatilis_contig100641:96..1461622929017.5489554-UTR-H-fluviatilis_contig100641:96..146Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100641 97..146 +
1691135151.4823205-UTR-H-fluviatilis_contig100641:96..1461691135151.4823205-UTR-H-fluviatilis_contig100641:96..146Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100641 97..146 +
1622929017.5626369-UTR-H-fluviatilis_contig100641:175..1761622929017.5626369-UTR-H-fluviatilis_contig100641:175..176Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100641 176..176 +
1691135151.4978364-UTR-H-fluviatilis_contig100641:175..1761691135151.4978364-UTR-H-fluviatilis_contig100641:175..176Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100641 176..176 +
1622929017.6540697-UTR-H-fluviatilis_contig100641:771..8511622929017.6540697-UTR-H-fluviatilis_contig100641:771..851Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100641 772..851 +
1691135151.5604947-UTR-H-fluviatilis_contig100641:771..8511691135151.5604947-UTR-H-fluviatilis_contig100641:771..851Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100641 772..851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.5775683-CDS-H-fluviatilis_contig100641:176..2371622929017.5775683-CDS-H-fluviatilis_contig100641:176..237Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100641 177..237 +
1691135151.5055819-CDS-H-fluviatilis_contig100641:176..2371691135151.5055819-CDS-H-fluviatilis_contig100641:176..237Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100641 177..237 +
1622929017.5927508-CDS-H-fluviatilis_contig100641:289..3621622929017.5927508-CDS-H-fluviatilis_contig100641:289..362Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100641 290..362 +
1691135151.5159934-CDS-H-fluviatilis_contig100641:289..3621691135151.5159934-CDS-H-fluviatilis_contig100641:289..362Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100641 290..362 +
1622929017.6115842-CDS-H-fluviatilis_contig100641:392..5671622929017.6115842-CDS-H-fluviatilis_contig100641:392..567Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100641 393..567 +
1691135151.5353699-CDS-H-fluviatilis_contig100641:392..5671691135151.5353699-CDS-H-fluviatilis_contig100641:392..567Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100641 393..567 +
1622929017.6252928-CDS-H-fluviatilis_contig100641:601..7161622929017.6252928-CDS-H-fluviatilis_contig100641:601..716Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100641 602..716 +
1691135151.5430257-CDS-H-fluviatilis_contig100641:601..7161691135151.5430257-CDS-H-fluviatilis_contig100641:601..716Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100641 602..716 +
1622929017.6391888-CDS-H-fluviatilis_contig100641:745..7711622929017.6391888-CDS-H-fluviatilis_contig100641:745..771Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100641 746..771 +
1691135151.5513763-CDS-H-fluviatilis_contig100641:745..7711691135151.5513763-CDS-H-fluviatilis_contig100641:745..771Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100641 746..771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100641.195.1

>prot_H-fluviatilis_contig100641.195.1 ID=prot_H-fluviatilis_contig100641.195.1|Name=mRNA_H-fluviatilis_contig100641.195.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=150bp
MAAANKRINKELENLSKTPPEGCQANIVGDDIFHWTASLMGPPKSPYEKG
VFLLDIQFPKDYPFKPPKVLFKTKVYHCNVNEKGELCIPILKDEWSPAIS
MDKVLTGLRGLLAEPNPDDPLMADIAKQFKESKKDYDKTAKEWTQKYAQ*
back to top

mRNA from alignment at H-fluviatilis_contig100641:97..851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100641.195.1 ID=mRNA_H-fluviatilis_contig100641.195.1|Name=mRNA_H-fluviatilis_contig100641.195.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=755bp|location=Sequence derived from alignment at H-fluviatilis_contig100641:97..851+ (Heribaudiella fluviatilis SAG_13_90)
GGAATCCGCAAGCAAGCCACACAAATATCCACACACTCCTGACCACACAG GTTTGAAACCCACCACTGAATTGCTCTAGAATGGCTGCAGCTAATAAAAG AATCAACAAAGAACTCGAAAATCTGTCGAAAACGCCCCCTGGTGAGAGAC CAGCCCACCCACCTTCGTCCTCCTGACTTTGGATCTGCTTTAGAGGGCTG CCAAGCAAATATCGTGGGTGATGATATCTTTCATTGGACAGCAAGCCTCA TGGGGCCTCCCAAATCGTACACTTTGCTGCTGAAGCATTTTCTCAGGCCA TACGAGAAGGGTGTCTTTTTGCTGGACATCCAATTTCCCAAAGACTATCC TTTCAAGCCACCAAAAGTTTTGTTCAAGACGAAAGTCTACCACTGCAATG TGAACGAGAAGGGCGAACTGTGCATTCCCATTCTCAAGGACGAATGGAGT CCAGCCATTTCCATGGACAAGGTACGGCATTTGCTTTATTCATTGACGAA AAAAGGTTTTAACGGGGTTGAGGGGACTGCTGGCGGAGCCTAACCCTGAC GATCCATTGATGGCTGACATTGCGAAGCAGTTCAAGGAATCGAAGAAGGA CTATGACAAAACTGCGAAAGGTATCAACCCAACCGCTCATAATTGTTAGA GTGGACTCAGAAGTATGCGCAATAGAAAGCGTTTTCAGACAGTTTGATCG CCGACGGTTACTGTAACGTATTTGAGTCTTTTTTTTCTCTACTTTTATAA AAACC
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig100641:97..851+

>mRNA_H-fluviatilis_contig100641.195.1 ID=mRNA_H-fluviatilis_contig100641.195.1|Name=mRNA_H-fluviatilis_contig100641.195.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=900bp|location=Sequence derived from alignment at H-fluviatilis_contig100641:97..851+ (Heribaudiella fluviatilis SAG_13_90)
ATGGCTGCAGCTAATAAAAGAATCAACAAAGAACTCGAAAATCTGTCGAA
AACGCCCCCTGATGGCTGCAGCTAATAAAAGAATCAACAAAGAACTCGAA
AATCTGTCGAAAACGCCCCCTGAGGGCTGCCAAGCAAATATCGTGGGTGA
TGATATCTTTCATTGGACAGCAAGCCTCATGGGGCCTCCCAAATCAGGGC
TGCCAAGCAAATATCGTGGGTGATGATATCTTTCATTGGACAGCAAGCCT
CATGGGGCCTCCCAAATCGCCATACGAGAAGGGTGTCTTTTTGCTGGACA
TCCAATTTCCCAAAGACTATCCTTTCAAGCCACCAAAAGTTTTGTTCAAG
ACGAAAGTCTACCACTGCAATGTGAACGAGAAGGGCGAACTGTGCATTCC
CATTCTCAAGGACGAATGGAGTCCAGCCATTTCCATGGACAAGGCCATAC
GAGAAGGGTGTCTTTTTGCTGGACATCCAATTTCCCAAAGACTATCCTTT
CAAGCCACCAAAAGTTTTGTTCAAGACGAAAGTCTACCACTGCAATGTGA
ACGAGAAGGGCGAACTGTGCATTCCCATTCTCAAGGACGAATGGAGTCCA
GCCATTTCCATGGACAAGGTTTTAACGGGGTTGAGGGGACTGCTGGCGGA
GCCTAACCCTGACGATCCATTGATGGCTGACATTGCGAAGCAGTTCAAGG
AATCGAAGAAGGACTATGACAAAACTGCGAAAGGTTTTAACGGGGTTGAG
GGGACTGCTGGCGGAGCCTAACCCTGACGATCCATTGATGGCTGACATTG
CGAAGCAGTTCAAGGAATCGAAGAAGGACTATGACAAAACTGCGAAAGAG
TGGACTCAGAAGTATGCGCAATAGAGTGGACTCAGAAGTATGCGCAATAG
back to top