mRNA_H-fluviatilis_contig100576.183.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100576.183.1
Unique NamemRNA_H-fluviatilis_contig100576.183.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
[Close]
BLAST of mRNA_H-fluviatilis_contig100576.183.1 vs. uniprot
Match: A0A2R5GY31_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GY31_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.280e-14
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1 
Query:    1 WGERSTSLPDFWQRVRRACGTGAMRGRILKVLKIVQKNRVVRFDIYSRREHARRITNLLK-SAQHRYGWYVKEHRA--AQQHCAQRAGYVTIGTL--------NVHSVRGKQYGLRHMLERYDVGCLALQETMLRAADW 384
            WGE S S+  FW R+        +R RILKV K++Q  R +RFD+Y     A RI +LL+ + + R+ W+ + HR    ++H    A     G L        N++ +R K+  L  +L+       ALQET+LRA DW
Sbjct:  142 WGETSPSMACFWARLEYCVPNAQVRRRILKVNKVLQAERELRFDVYVVSTEAARILDLLRRNGRRRFDWHTRLHRPYHEREHPGDAAAAPAAGALKDLRLLAWNINGLRRKREDLASLLQTTVPHVAALQETLLRATDW 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100576.183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2R5GY31_9STRA3.280e-1435.25Uncharacterized protein (Fragment) n=1 Tax=Hondaea... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100576contigH-fluviatilis_contig100576:159..735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.3751702-CDS-H-fluviatilis_contig100576:158..3771622929016.3751702-CDS-H-fluviatilis_contig100576:158..377Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100576 159..377 +
1691135150.7747548-CDS-H-fluviatilis_contig100576:158..3771691135150.7747548-CDS-H-fluviatilis_contig100576:158..377Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100576 159..377 +
1622929016.390308-CDS-H-fluviatilis_contig100576:570..7351622929016.390308-CDS-H-fluviatilis_contig100576:570..735Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100576 571..735 +
1691135150.7839353-CDS-H-fluviatilis_contig100576:570..7351691135150.7839353-CDS-H-fluviatilis_contig100576:570..735Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100576 571..735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100576.183.1prot_H-fluviatilis_contig100576.183.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100576 159..735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100576.183.1

>prot_H-fluviatilis_contig100576.183.1 ID=prot_H-fluviatilis_contig100576.183.1|Name=mRNA_H-fluviatilis_contig100576.183.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=128bp
WGERSTSLPDFWQRVRRACGTGAMRGRILKVLKIVQKNRVVRFDIYSRRE
HARRITNLLKSAQHRYGWYVKEHRAAQQHCAQRAGYVTIGTLNVHSVRGK
QYGLRHMLERYDVGCLALQETMLRAADW
back to top

mRNA from alignment at H-fluviatilis_contig100576:159..735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100576.183.1 ID=mRNA_H-fluviatilis_contig100576.183.1|Name=mRNA_H-fluviatilis_contig100576.183.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=577bp|location=Sequence derived from alignment at H-fluviatilis_contig100576:159..735+ (Heribaudiella fluviatilis SAG_13_90)
TGGGGAGAGAGGAGCACGTCTTTGCCGGACTTTTGGCAGAGGGTGCGGCG
GGCGTGCGGTACAGGTGCGATGCGTGGGCGCATTCTCAAGGTGTTAAAAA
TCGTACAGAAAAATAGGGTGGTTCGATTTGACATATACAGTAGACGCGAG
CACGCCCGACGCATCACGAACCTGCTGAAAAGTGCGCAGCACAGGTATGG
GTGGTATGTGAAGGAGCATGTAGCGAGACGTATATCGCCTTCTCTGTCAT
CGTAACACTAAGAATACCTCACAGATTCGACACCACCCAACATACAGTAC
AGCCGGTACAGCCAATACAAATGGCAGTACGAGCCAGAAGCGACGGGATG
TACAACTGCAAGGTACTACGACACTCAGAATCAGAAACGTGAACAATACG
AGCAGGACCCAGCGGGCAGCGCAGCAGCACTGTGCACAAAGAGCAGGGTA
CGTAACAATAGGGACTCTAAACGTCCACAGCGTACGCGGAAAGCAGTATG
GGTTGCGACACATGCTGGAACGATATGATGTGGGATGTCTGGCGCTACAA
GAGACCATGTTACGCGCGGCTGATTGG
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig100576:159..735+

>mRNA_H-fluviatilis_contig100576.183.1 ID=mRNA_H-fluviatilis_contig100576.183.1|Name=mRNA_H-fluviatilis_contig100576.183.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=768bp|location=Sequence derived from alignment at H-fluviatilis_contig100576:159..735+ (Heribaudiella fluviatilis SAG_13_90)
TGGGGAGAGAGGAGCACGTCTTTGCCGGACTTTTGGCAGAGGGTGCGGCG
GGCGTGCGGTACAGGTGCGATGCGTGGGCGCATTCTCAAGGTGTTAAAAA
TCGTACAGAAAAATAGGGTGGTTCGATTTGACATATACAGTAGACGCGAG
CACGCCCGACGCATCACGAACCTGCTGAAAAGTGCGCAGCACAGGTATGG
GTGGTATGTGAAGGAGCATTGGGGAGAGAGGAGCACGTCTTTGCCGGACT
TTTGGCAGAGGGTGCGGCGGGCGTGCGGTACAGGTGCGATGCGTGGGCGC
ATTCTCAAGGTGTTAAAAATCGTACAGAAAAATAGGGTGGTTCGATTTGA
CATATACAGTAGACGCGAGCACGCCCGACGCATCACGAACCTGCTGAAAA
GTGCGCAGCACAGGTATGGGTGGTATGTGAAGGAGCATCGGGCAGCGCAG
CAGCACTGTGCACAAAGAGCAGGGTACGTAACAATAGGGACTCTAAACGT
CCACAGCGTACGCGGAAAGCAGTATGGGTTGCGACACATGCTGGAACGAT
ATGATGTGGGATGTCTGGCGCTACAAGAGACCATGTTACGCGCGGCTGAT
TGGCGGGCAGCGCAGCAGCACTGTGCACAAAGAGCAGGGTACGTAACAAT
AGGGACTCTAAACGTCCACAGCGTACGCGGAAAGCAGTATGGGTTGCGAC
ACATGCTGGAACGATATGATGTGGGATGTCTGGCGCTACAAGAGACCATG
TTACGCGCGGCTGATTGG
back to top