mRNA_H-fluviatilis_contig10054.169.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10054.169.1
Unique NamemRNA_H-fluviatilis_contig10054.169.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10054.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10054contigH-fluviatilis_contig10054:7827..8183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.280011-UTR-H-fluviatilis_contig10054:7826..78561622929014.280011-UTR-H-fluviatilis_contig10054:7826..7856Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10054 7827..7856 +
1691135149.914491-UTR-H-fluviatilis_contig10054:7826..78561691135149.914491-UTR-H-fluviatilis_contig10054:7826..7856Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10054 7827..7856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.2890077-CDS-H-fluviatilis_contig10054:7856..81831622929014.2890077-CDS-H-fluviatilis_contig10054:7856..8183Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10054 7857..8183 +
1691135149.927424-CDS-H-fluviatilis_contig10054:7856..81831691135149.927424-CDS-H-fluviatilis_contig10054:7856..8183Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10054 7857..8183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10054.169.1prot_H-fluviatilis_contig10054.169.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10054 7857..8183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10054.169.1

>prot_H-fluviatilis_contig10054.169.1 ID=prot_H-fluviatilis_contig10054.169.1|Name=mRNA_H-fluviatilis_contig10054.169.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=109bp
MKKDTQPAPQISYHMAVRACVESEQWQVAIDLLTEMRDLRLTIDQKTFST
VIKGCGRARMVEPAMKAFEIAKQSGALDMLTYSSAIFACGRARDYKAALA
IVDEMREAG
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mRNA from alignment at H-fluviatilis_contig10054:7827..8183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10054.169.1 ID=mRNA_H-fluviatilis_contig10054.169.1|Name=mRNA_H-fluviatilis_contig10054.169.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=357bp|location=Sequence derived from alignment at H-fluviatilis_contig10054:7827..8183+ (Heribaudiella fluviatilis SAG_13_90)
TGGGAGGAGGCCTTGAAAGTATTGGAGGTAATGAAAAAGGACACACAACC
TGCCCCGCAAATTTCGTACCATATGGCAGTGCGAGCGTGTGTAGAAAGCG
AACAGTGGCAGGTGGCAATTGATTTGTTGACCGAGATGCGGGACTTGAGG
CTCACAATAGATCAAAAGACATTTTCCACGGTGATCAAGGGGTGCGGACG
AGCCAGAATGGTTGAGCCCGCGATGAAGGCGTTTGAAATAGCAAAGCAGT
CGGGAGCGCTCGACATGCTGACGTACAGTAGCGCAATCTTCGCGTGCGGG
AGGGCGCGCGATTACAAGGCTGCTCTGGCCATTGTTGATGAAATGCGAGA
AGCAGGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10054:7827..8183+

>mRNA_H-fluviatilis_contig10054.169.1 ID=mRNA_H-fluviatilis_contig10054.169.1|Name=mRNA_H-fluviatilis_contig10054.169.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=654bp|location=Sequence derived from alignment at H-fluviatilis_contig10054:7827..8183+ (Heribaudiella fluviatilis SAG_13_90)
ATGAAAAAGGACACACAACCTGCCCCGCAAATTTCGTACCATATGGCAGT
GCGAGCGTGTGTAGAAAGCGAACAGTGGCAGGTGGCAATTGATTTGTTGA
CCGAGATGCGGGACTTGAGGCTCACAATAGATCAAAAGACATTTTCCACG
GTGATCAAGGGGTGCGGACGAGCCAGAATGGTTGAGCCCGCGATGAAGGC
GTTTGAAATAGCAAAGCAGTCGGGAGCGCTCGACATGCTGACGTACAGTA
GCGCAATCTTCGCGTGCGGGAGGGCGCGCGATTACAAGGCTGCTCTGGCC
ATTGTTGATGAAATGCGAGAAGCAGGGATGAAAAAGGACACACAACCTGC
CCCGCAAATTTCGTACCATATGGCAGTGCGAGCGTGTGTAGAAAGCGAAC
AGTGGCAGGTGGCAATTGATTTGTTGACCGAGATGCGGGACTTGAGGCTC
ACAATAGATCAAAAGACATTTTCCACGGTGATCAAGGGGTGCGGACGAGC
CAGAATGGTTGAGCCCGCGATGAAGGCGTTTGAAATAGCAAAGCAGTCGG
GAGCGCTCGACATGCTGACGTACAGTAGCGCAATCTTCGCGTGCGGGAGG
GCGCGCGATTACAAGGCTGCTCTGGCCATTGTTGATGAAATGCGAGAAGC
AGGG
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