Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 357 |
| Cds size | 327 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929014.280011-UTR-H-fluviatilis_contig10054:7826..7856 | 1622929014.280011-UTR-H-fluviatilis_contig10054:7826..7856 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10054 7827..7856 + |
| 1691135149.914491-UTR-H-fluviatilis_contig10054:7826..7856 | 1691135149.914491-UTR-H-fluviatilis_contig10054:7826..7856 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10054 7827..7856 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929014.2890077-CDS-H-fluviatilis_contig10054:7856..8183 | 1622929014.2890077-CDS-H-fluviatilis_contig10054:7856..8183 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10054 7857..8183 + |
| 1691135149.927424-CDS-H-fluviatilis_contig10054:7856..8183 | 1691135149.927424-CDS-H-fluviatilis_contig10054:7856..8183 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10054 7857..8183 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10054.169.1 >prot_H-fluviatilis_contig10054.169.1 ID=prot_H-fluviatilis_contig10054.169.1|Name=mRNA_H-fluviatilis_contig10054.169.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=109bp
MKKDTQPAPQISYHMAVRACVESEQWQVAIDLLTEMRDLRLTIDQKTFST
VIKGCGRARMVEPAMKAFEIAKQSGALDMLTYSSAIFACGRARDYKAALA
IVDEMREAG back to topmRNA from alignment at H-fluviatilis_contig10054:7827..8183+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig10054.169.1 ID=mRNA_H-fluviatilis_contig10054.169.1|Name=mRNA_H-fluviatilis_contig10054.169.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=357bp|location=Sequence derived from alignment at H-fluviatilis_contig10054:7827..8183+ (Heribaudiella fluviatilis SAG_13_90)
TGGGAGGAGGCCTTGAAAGTATTGGAGGTAATGAAAAAGGACACACAACC
TGCCCCGCAAATTTCGTACCATATGGCAGTGCGAGCGTGTGTAGAAAGCG
AACAGTGGCAGGTGGCAATTGATTTGTTGACCGAGATGCGGGACTTGAGG
CTCACAATAGATCAAAAGACATTTTCCACGGTGATCAAGGGGTGCGGACG
AGCCAGAATGGTTGAGCCCGCGATGAAGGCGTTTGAAATAGCAAAGCAGT
CGGGAGCGCTCGACATGCTGACGTACAGTAGCGCAATCTTCGCGTGCGGG
AGGGCGCGCGATTACAAGGCTGCTCTGGCCATTGTTGATGAAATGCGAGA
AGCAGGG back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig10054:7827..8183+ >mRNA_H-fluviatilis_contig10054.169.1 ID=mRNA_H-fluviatilis_contig10054.169.1|Name=mRNA_H-fluviatilis_contig10054.169.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=654bp|location=Sequence derived from alignment at H-fluviatilis_contig10054:7827..8183+ (Heribaudiella fluviatilis SAG_13_90)
ATGAAAAAGGACACACAACCTGCCCCGCAAATTTCGTACCATATGGCAGT
GCGAGCGTGTGTAGAAAGCGAACAGTGGCAGGTGGCAATTGATTTGTTGA
CCGAGATGCGGGACTTGAGGCTCACAATAGATCAAAAGACATTTTCCACG
GTGATCAAGGGGTGCGGACGAGCCAGAATGGTTGAGCCCGCGATGAAGGC
GTTTGAAATAGCAAAGCAGTCGGGAGCGCTCGACATGCTGACGTACAGTA
GCGCAATCTTCGCGTGCGGGAGGGCGCGCGATTACAAGGCTGCTCTGGCC
ATTGTTGATGAAATGCGAGAAGCAGGGATGAAAAAGGACACACAACCTGC
CCCGCAAATTTCGTACCATATGGCAGTGCGAGCGTGTGTAGAAAGCGAAC
AGTGGCAGGTGGCAATTGATTTGTTGACCGAGATGCGGGACTTGAGGCTC
ACAATAGATCAAAAGACATTTTCCACGGTGATCAAGGGGTGCGGACGAGC
CAGAATGGTTGAGCCCGCGATGAAGGCGTTTGAAATAGCAAAGCAGTCGG
GAGCGCTCGACATGCTGACGTACAGTAGCGCAATCTTCGCGTGCGGGAGG
GCGCGCGATTACAAGGCTGCTCTGGCCATTGTTGATGAAATGCGAGAAGC
AGGG back to top
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