mRNA_H-fluviatilis_contig10048.157.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10048.157.1
Unique NamemRNA_H-fluviatilis_contig10048.157.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10048.157.1 vs. uniprot
Match: A0A6H5KKY0_9PHAE (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY0_9PHAE)

HSP 1 Score: 366 bits (940), Expect = 3.360e-113
Identity = 211/353 (59.77%), Postives = 245/353 (69.41%), Query Frame = 1 
Query:    1 VMVLLHEWMVNRGELGAAEGLGMSLRACCPLSRGAEAFVEAHLQRVRLLRAQSR---------WNEAVKSASALAKLCDARGMAPQYARVLLELSRARLGAEPLSPVGALPYALRCLAVCDSYSLDAIHATAMTHLAEVHLRLGSTRRARILLRACLGHLLSNASVQTQAEAWLAMAKCDITEFSLSAEKTRDADSTFRADNAGGAGESE------GREXXXXXXXXXEGQRERQWGGDGDSVAVGQGGKAELLHRSAEYLDKAIVLFKRCHDFAGLRECWCLKARVCGELVEQGGPLENEARQA--RDESAEAFLAVLEAGARALASTPPGLKIGPEEIKRYVARATSDVPW 1008
            VMVLLHEWMVNRGE  AAEGLGMSLRACCPLS+GAE+F+EAHLQ+VRLLRAQ R         W EAVK+AS LAKL D RG+APQYAR+LLELSRA LGAEP SPVGALP+ALRCLAVC+SY+LDAIHA+AMTHLAEVHLR+GSTRRARILL+ACLG LL++A VQ+Q EAWLAMA+CDI E SL                 GG G+S       G E        X GQ     GG     A  +  + E+L R+   LD+AI   KRCHDFAGLREC  LKARVC ELV       ++ R    R+ S+  FLA+ +A ARALA   PGLKIGP E++RY++ +   VPW
Sbjct:  631 VMVLLHEWMVNRGEFRAAEGLGMSLRACCPLSQGAESFIEAHLQKVRLLRAQGRQVIPQPPVRWAEAVKAASDLAKLSDTRGLAPQYARLLLELSRAWLGAEPASPVGALPHALRCLAVCESYTLDAIHASAMTHLAEVHLRMGSTRRARILLQACLGQLLASAPVQSQGEAWLAMARCDIAEVSL-----------------GGGGQSSTAVPGAGXEGGVTIEGRXXGQG--TGGGPAAPAATRRARREEVLRRAVLNLDRAIAKLKRCHDFAGLRECLYLKARVCAELVSAHEEASDKYRATVERNASSRDFLAISKAVARALACPSPGLKIGPAEVRRYMSASMESVPW 964
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BLAST of mRNA_H-fluviatilis_contig10048.157.1 vs. uniprot
Match: D7FTQ0_ECTSI (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ0_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 2.220e-87
Identity = 185/340 (54.41%), Postives = 217/340 (63.82%), Query Frame = 1 
Query:    1 VMVLLHEWMVNRGELGAAEGLGMSLRACCPLSRGAEAFVEAHLQRVRLLRAQSRWNEAVKSASALAKLCDARGMAPQYARVLLELSRARLGAEPLSPVGALPYALRCLAVCDSYSLDAIHATAMTHLAEVHLRLGSTRRARILLRACLGHLLSNASVQTQAEAWLAMAKCDITEFSLSAEKTRDADSTFRADNAGGAG--ESEGREXXXXXXXXXEGQRERQWGGDGDSVAVGQGGKAELLHRSAEYLDKAIVLFKRCHDFAGLRECWCLKARVCGELVEQGGPLENEARQA--RDESAEAFLAVLEAGARALASTPPGLKIGPEEIKRYVARATSDVPW 1008
            VMVLLHEWMVNRGE  AAEG                                  W EAVK+AS LAKL D RG+APQYAR+LLELSRA LGAEP SPVGALP+ALRCLAVC+SY+LDAIHA+AMTHLA+VHLR+GSTRRARILL+ACLG LL++A VQ+Q EAWLAMA+CDI E SL         ++     AGG G    E   XXXXXXX X               A G+  + E+L R+   LD+AI   KRCHDFAGLREC  LKARVC ELV +     ++ R    R+ S+  FLAV +A ARALA   PGLKIGP E++RY++ +   VPW
Sbjct:  458 VMVLLHEWMVNRGEFRAAEG----------------------------------WAEAVKAASDLAKLSDTRGLAPQYARLLLELSRAWLGAEPASPVGALPHALRCLAVCESYTLDAIHASAMTHLAQVHLRMGSTRRARILLQACLGQLLASAPVQSQGEAWLAMARCDIAEVSLGGG----GQTSTAVPEAGGEGGVTIEXXXXXXXXXXRXXXXXPAAPAALSGPAATGRVRRGEVLRRAVLNLDRAIAKLKRCHDFAGLRECLYLKARVCAELVSEHEEASDKYRATVERNASSREFLAVSKAVARALACPSPGLKIGPAEVRRYMSASVESVPW 759
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BLAST of mRNA_H-fluviatilis_contig10048.157.1 vs. uniprot
Match: F0Y6Q2_AURAN (Anaphase-promoting complex subunit 5 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6Q2_AURAN)

HSP 1 Score: 117 bits (292), Expect = 6.760e-24
Identity = 70/174 (40.23%), Postives = 100/174 (57.47%), Query Frame = 1 
Query:    7 VLLHEWMVNRGELGAAEGLGMSLRACCPLSR--GAEAFVEAHLQRVRLLRAQSRWNEAVKSASALAKLCDARGMAPQYARVLLELSRARLGAEPLSPVGALPYALRCLAVCDSYSLDAIHATAMTHLAEVHLRLGSTRRARILLRACLGHLLSNASVQTQAEAWLAMAKCDITE 522
            +L  EW ++RG    AE L  +L    P+    G EA VEA     RLL  + RW  AVK+ + L + C  +G+  Q A  L+  +  RL A P SPV AL  ALRCLA+C+ ++LD +HA A   L  V++ LGS  +AR L++  L  LL ++ VQ Q +AW A+A+ ++ E
Sbjct:  678 LLKFEWALHRGANKRAEALASALLGVSPVQADLGPEAHVEAVRASARLLARRERWERAVKTMNELERYCGRKGLWAQQAECLMLGAHWRLDACPQSPVPALSPALRCLALCEKFALDHLHAEAAFALGRVNVYLGSVAKARSLIQGALPKLLGHSHVQLQGDAWYALAETELRE 851
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BLAST of mRNA_H-fluviatilis_contig10048.157.1 vs. uniprot
Match: A0A7S4E887_9STRA (Anaphase-promoting complex subunit 5 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E887_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.150e-17
Identity = 62/176 (35.23%), Postives = 96/176 (54.55%), Query Frame = 1 
Query:    7 VLLHEWMVNRGELGAAEGLGMSLRACCPLSRGAEAFVEAHLQRVR----LLRAQSRWNEAVKSASALAKLCDARGMAPQYARVLLELSRARLGAEPLSPVGALPYALRCLAVCDSYSLDAIHATAMTHLAEVHLRLGSTRRARILLRACLGHLLSNASVQTQAEAWLAMAKCDITE 522
            +L  EW V+R  L  A  L  +L    P  R ++  VE H++ +R    L  A+  +  AVK A+ L ++C  RG+    A++L + S+  L   P  PV A+  ALR LA+C+ ++LDA+HA A   LA V L LG+  +AR   + C   +L  + V  Q + W A+A+C++ E
Sbjct:  673 LLRFEWAVHRHALRRAAALHEALLGVSP--RQSDYDVECHVEALRCDLRLSVARDDYERAVKGAAKLERICGNRGLWALQAKLLCDRSKWLLDGCPQEPVPAMNPALRALALCEQWALDALHAEATLRLALVQLGLGNIPKARDAFQQCQLKILEQSHVDVQGDLWYALAQCELEE 846
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BLAST of mRNA_H-fluviatilis_contig10048.157.1 vs. uniprot
Match: A0A4S4EPR2_CAMSI (Anaphase-promoting complex subunit 5 n=3 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4EPR2_CAMSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.480e-11
Identity = 60/179 (33.52%), Postives = 95/179 (53.07%), Query Frame = 1 
Query:   10 LLHEWMVNRGELGAAEGLGMSLRACCPLSRGAEAFV--EAHLQRVRLLRAQSRWNEAVKSASALAKLCDARGMAPQYARVLLELSRARLGAEPLSPVGALPYALRCLAVCDSYSLDAIHATAMTHLAEVHLRLGS--TRRARILLRACLGHLLSNASVQTQAEAWLAMAKCDITEFSLS 534
            LLHE  ++RG L  A+ L   L        G +  +  EA  +  R L A +++++A   A +L  +C   GM  + A VLL L  A +     + V  +PYAL  L+ C S++LD + A+A   LAE+ L LGS   +RA  L+   L  +L +  ++ +A A++A AKC +++ S S
Sbjct:  723 LLHEHALHRGHLKLAQQLCDELGVLASSVTGVDMELKKEASFRHARTLLAANQFSQAAAVAHSLFCMCYKFGMQVENASVLLLL--AEIHKRSGNAVLGIPYALASLSFCQSFNLDLLKASATLTLAELWLSLGSDHAKRASTLMHCALPIILGHGGLELRARAFIAEAKCYLSDPSFS 899
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BLAST of mRNA_H-fluviatilis_contig10048.157.1 vs. uniprot
Match: A0A7S4QWD6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QWD6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.100e-9
Identity = 54/188 (28.72%), Postives = 86/188 (45.74%), Query Frame = 1 
Query:  292 VGALPYALRCLAVCDSYSLDAIHATAMTHLAEVHLRLGSTRRARILLRACLGHLLSNASVQTQAEAWLAMAKCDITEFSLSAEKTRDADSTFRADNAGGAGESEGREXXXXXXXXXEGQRERQWGGDGDSVAVGQGGKAEL--LHRSA-EYLDKAIVLFKRCHDFAGLRECWCLKARVCGELVEQGGP 846
            + ALP+ L CL++C+S S+D+IHA+A+  LA VH RL + ++ R ++ +C+  LL +  V  Q E +  +AKC + E S       + D + R    GG                                 + +  K +L  LHR A   L+++  LF+R  D   LRE   L+AR+   +     P
Sbjct:  307 LSALPFLLECLSLCESQSIDSIHASALCVLAGVHSRLDNYQKGRAMVLSCMPSLLCHGHVWFQGEGYFIIAKCYLRESSDFVVSYNNKDDSRRGKEGGGG--------------------------------MKKSYKKQLMKLHRLALSNLNESKTLFRRVQDIERLREVHYLRARIYDSMYNLTDP 462
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BLAST of mRNA_H-fluviatilis_contig10048.157.1 vs. uniprot
Match: A0A6A4LK45_9ERIC (Anaphase-promoting complex subunit 5 (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4LK45_9ERIC)

HSP 1 Score: 68.2 bits (165), Expect = 2.380e-8
Identity = 58/179 (32.40%), Postives = 90/179 (50.28%), Query Frame = 1 
Query:   10 LLHEWMVNRGELGAAEGLGMSLRACCPLSRGA--EAFVEAHLQRVRLLRAQSRWNEAVKSASALAKLCDARGMAPQYARVLLELSRARLGAEPLSPVGALPYALRCLAVCDSYSLDAIHATAMTHLAEVHLRLGST--RRARILLRACLGHLLSNASVQTQAEAWLAMAKCDITEFSLS 534
            LLHE  ++ G L  A  L   L        G   E   EA L+R R L A  ++++A   A +L  +C       + A +LL L  A +     + V  +P AL  L+ C S++LD + A+A   LAE+ L LGS   +RA  L+   L  +L +  ++ +A A++A AKC +++ S S
Sbjct:  657 LLHERALHWGHLKLAHQLCDELGVLASSVTGVDEELKTEASLRRARTLLAAKQFSQAAAVAHSLFCMCHKLNKQVENAMILLLL--AEIHKRSGNAVLGIPCALASLSFCQSFNLDLLKASATLTLAELWLSLGSNHAKRASTLVHRSLPMILGHGGLELRARAFIAEAKCYLSDPSFS 833
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BLAST of mRNA_H-fluviatilis_contig10048.157.1 vs. uniprot
Match: A0A067EKY8_CITSI (Anaphase-promoting complex subunit 5 n=7 Tax=Citrus TaxID=2706 RepID=A0A067EKY8_CITSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.260e-7
Identity = 56/186 (30.11%), Postives = 95/186 (51.08%), Query Frame = 1 
Query:   10 LLHEWMVNRGELGAAEGLGMSLRACCPLSRGAEAFV--EAHLQRVRLLRAQSRWNEAVKSASALAKLCDARGMAPQYARVLLELSRARLGAEPLSPVGALPYALRCLAVCDSYSLDAIHATAMTHLAEVHLRLGST--RRARILLRACLGHLLSNASVQTQAEAWLAMAKCDITEFSLSAEKTRDA 555
            LLHE  ++RG L  A+ +   L        G +  +  EA L+  R L A ++++EA   A +L  +C    +  + A VLL L  A +  +  + V  +PYAL  L+ C   +LD + A+A   LAE+ L  G    + A  L++  L  +L +  ++ +A A++A AKC +++ S S  +  +A
Sbjct:  670 LLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL--AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEA 853
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BLAST of mRNA_H-fluviatilis_contig10048.157.1 vs. uniprot
Match: A0A7R9ZRD1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRD1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.170e-5
Identity = 57/198 (28.79%), Postives = 88/198 (44.44%), Query Frame = 1 
Query:  235 ARVLLELSRARLGAEPLSPVGALPYALRCLAVCDSYSLDAIHATAMTHLAEVHLRLGSTRRARILLRACLGHLLSNASVQTQAEAWLAMAKCDITEFSLSAEKTRDADSTFRADNAGGAGESEGREXXXXXXXXXEGQRERQWGGDGDSVAVGQGGKAELLHRSAEYLDKAIVLFKRCHDFAGLRECWCLKARVCGEL 828
            A +LL  S  +L A     + AL   L+ L +     +D IHATA++ LA + L++G  +RA  LL++C+  L+ +  V  Q EA L  A C +    LS  K    D+        GA  S               QR+R                 + L+ +  +L +A  LF++C D   L++   L+ARVC +L
Sbjct:   22 ADLLLRWSELQLEASSTG-MAALKSLLQVLTLSKHDEMDGIHATALSLLARLFLKMGHAKRALALLKSCINQLVQHEHVHYQGEAMLTYAMCYMQ---LSNPKN---DAWMEVTGERGARPSSN-------------QRKR-----------------DRLN-ALSFLRRAQELFEKCQDIHKLKQIHYLQARVCNDL 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10048.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KKY0_9PHAE3.360e-11359.77Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
D7FTQ0_ECTSI2.220e-8754.41Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
F0Y6Q2_AURAN6.760e-2440.23Anaphase-promoting complex subunit 5 n=1 Tax=Aureo... [more]
A0A7S4E887_9STRA4.150e-1735.23Anaphase-promoting complex subunit 5 n=1 Tax=Pelag... [more]
A0A4S4EPR2_CAMSI5.480e-1133.52Anaphase-promoting complex subunit 5 n=3 Tax=Camel... [more]
A0A7S4QWD6_9STRA1.100e-928.72Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6A4LK45_9ERIC2.380e-832.40Anaphase-promoting complex subunit 5 (Fragment) n=... [more]
A0A067EKY8_CITSI2.260e-730.11Anaphase-promoting complex subunit 5 n=7 Tax=Citru... [more]
A0A7R9ZRD1_9STRA1.170e-528.79Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10048contigH-fluviatilis_contig10048:3..5324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.4
Seed ortholog evalue3.3e-77
Seed eggNOG ortholog2880.D7FTQ0
Preferred nameAPC5
KEGG koko:K03352
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04657,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04657,map04914,map05166
KEGG ModuleM00389
GOsGO:0000151,GO:0000152,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0019538,GO:0019941,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.protein K11-linked ubiquitination
EggNOG OGsKOG4322@1,KOG4322@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size1522
Cds size1014
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.0955734-UTR-H-fluviatilis_contig10048:2..51622929013.0955734-UTR-H-fluviatilis_contig10048:2..5Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10048 3..5 +
1691135149.1350696-UTR-H-fluviatilis_contig10048:2..51691135149.1350696-UTR-H-fluviatilis_contig10048:2..5Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10048 3..5 +
1622929013.2002044-UTR-H-fluviatilis_contig10048:4819..53241622929013.2002044-UTR-H-fluviatilis_contig10048:4819..5324Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10048 4820..5324 +
1691135149.2344782-UTR-H-fluviatilis_contig10048:4819..53241691135149.2344782-UTR-H-fluviatilis_contig10048:4819..5324Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10048 4820..5324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.1098058-CDS-H-fluviatilis_contig10048:5..611622929013.1098058-CDS-H-fluviatilis_contig10048:5..61Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10048 6..61 +
1691135149.1529982-CDS-H-fluviatilis_contig10048:5..611691135149.1529982-CDS-H-fluviatilis_contig10048:5..61Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10048 6..61 +
1622929013.125052-CDS-H-fluviatilis_contig10048:913..10151622929013.125052-CDS-H-fluviatilis_contig10048:913..1015Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10048 914..1015 +
1691135149.174598-CDS-H-fluviatilis_contig10048:913..10151691135149.174598-CDS-H-fluviatilis_contig10048:913..1015Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10048 914..1015 +
1622929013.1369288-CDS-H-fluviatilis_contig10048:1920..21461622929013.1369288-CDS-H-fluviatilis_contig10048:1920..2146Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10048 1921..2146 +
1691135149.1898153-CDS-H-fluviatilis_contig10048:1920..21461691135149.1898153-CDS-H-fluviatilis_contig10048:1920..2146Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10048 1921..2146 +
1622929013.150827-CDS-H-fluviatilis_contig10048:3659..40791622929013.150827-CDS-H-fluviatilis_contig10048:3659..4079Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10048 3660..4079 +
1691135149.2070162-CDS-H-fluviatilis_contig10048:3659..40791691135149.2070162-CDS-H-fluviatilis_contig10048:3659..4079Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10048 3660..4079 +
1622929013.180265-CDS-H-fluviatilis_contig10048:4609..48191622929013.180265-CDS-H-fluviatilis_contig10048:4609..4819Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10048 4610..4819 +
1691135149.2245646-CDS-H-fluviatilis_contig10048:4609..48191691135149.2245646-CDS-H-fluviatilis_contig10048:4609..4819Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10048 4610..4819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10048.157.1prot_H-fluviatilis_contig10048.157.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10048 6..4819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10048.157.1

>prot_H-fluviatilis_contig10048.157.1 ID=prot_H-fluviatilis_contig10048.157.1|Name=mRNA_H-fluviatilis_contig10048.157.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=338bp
MVLLHEWMVNRGELGAAEGLGMSLRACCPLSRGAEAFVEAHLQRVRLLRA
QSRWNEAVKSASALAKLCDARGMAPQYARVLLELSRARLGAEPLSPVGAL
PYALRCLAVCDSYSLDAIHATAMTHLAEVHLRLGSTRRARILLRACLGHL
LSNASVQTQAEAWLAMAKCDITEFSLSAEKTRDADSTFRADNAGGAGESE
GREGEEGEGKAGEGQRERQWGGDGDSVAVGQGGKAELLHRSAEYLDKAIV
LFKRCHDFAGLRECWCLKARVCGELVEQGGPLENEARQARDESAEAFLAV
LEAGARALASTPPGLKIGPEEIKRYVARATSDVPWQR*
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mRNA from alignment at H-fluviatilis_contig10048:3..5324+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10048.157.1 ID=mRNA_H-fluviatilis_contig10048.157.1|Name=mRNA_H-fluviatilis_contig10048.157.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=5322bp|location=Sequence derived from alignment at H-fluviatilis_contig10048:3..5324+ (Heribaudiella fluviatilis SAG_13_90)
GTAATGGTCTTGCTCCATGAGTGGATGGTCAACCGCGGGGAACTCGGTGC
TGCGGAAGGGTGAGCGCTAGTAATATTTACAGAAGGAGTTTGCTTGATGG
CGTGTGCCCGTTTGGGCGGCGTTGTTGATGGAAACCGTTGCGGCCAAACT
GTTGCACCCTAGAACCAGGCATCTTGAGAGAGAGTGCAAGCAAGAACACT
ACAGTATGTACTCTGTGCGTTGGCCAGGATGTACACCGCCGTGACAGCGC
TTTGTAGAGAGCGAGGGAGAGAGAGAGAGGGAGGTGGTGATTGGCGAGCC
TTTTTTTTATTGATCCCTCAACGCGTGCTTGTACTCGCAAGGCATGTAGT
GCCATGGTAACGGACAACCACTCGTGCCTATTTCCACACTACCACCTACG
GTGCATGCATCGGATGAACGACTTTGTTCAGGAATGGATGATGACGGCGA
CGTAGTAGCCCTCCGGTCTGAAGGCAACAAGCTTCGCTCTCGACACACTT
GCAATCGTGTATCAGAGATATTACGTTGTATAGGGTGCCATTTGCAATAT
CCGACACGCTCGGGACTAGATGATGACACCCGGCACTAGAGGGGGGCTTC
CGCCTGTGATCGTGCTACTTGTTGGGGCCGCCGGTGCATTTGGTGCTTGT
CTTTGTGTGCCATAGCTGAGGGTGTTCTACCATTTCGGCGTACAAAGTAA
AATTGTGGTTGTTGATGTTGTTGTCGTGTGTACTGCGCCGTCGTGTTTAC
TTTGAAAGATGAAAACATGAACAGAAACCCAAATCCCTATGTTTTCTCAC
TGGGTCTTGAGAGCTGTGTGTGGGGTTGGCGGTTGTCGTGTTCGTGCTGG
CCAAGAAAAATGAACACGTTTTTTTCGGTTTTGTTGTCGCGTTCGATGCC
ACAATGGTCAGGCTCGGGATGAGCCTCCGAGCGTGCTGTCCGCTCAGTCG
AGGTGCCGAAGCCTTTGTCGAGGCGCATTTGCAGCGTGTGCGGCTTCTGC
GGGCCCAGAGCAGGTACGGTATGTGTTTTTCTGCAAACGTGTATTATGTC
TTCATCTGTGCATGTGTTTTTTTGGTGTTCATCTGTGTGTGTGTTTTTAC
GTGTTTACCTTTGTATGTATTTTCATTTGTTCATCTGGGTATGTGTTTTC
ACGTGTTTGTTTCTGTCTCGACTTTTGCAAAAGGTAACGCGTCAGGTTTG
TGAGTTACCGCAAGCCACGGTCACAAGTGGCCGAACACCGTGATATTCTA
CGGGACTTCGTCCCCCCGCAGGCTCCAAAGCCCAATGATCACCGTTTCCG
GGGGAGCTATGTGTCCTGTTTGTGCGTTTGTGTTACGGTGTGGCGGGACG
TACCGGAAGGAACTGAGACGTACTAGCATTGTCCCGAGTTATGAGCAGAT
ATGACAACGCAGCGGAGCAGTTGCAGCTGGGTTTCTTCTTCGAGAAGGTC
GTGTTCAAGGTTCGTGCGTGATCTCGCCACACAGGACGTAGGGCTCAAGG
GCCGTTCGTATATATGGTGGGGACGAGTCAAGACGCTTTGAAATGCTGAT
GCCGCATCCAAACGACTTTTGAAGCACTGCCAGGACTCAGCTGTTGCTTG
ACATCCTAACCCACCCGCTTTCCGGTCATCCTTAACGTGGCAATGACTCC
TAAGGGCTTCTCCTCTGGAGAATGCAGTCGCCCGTCCACCGACGCCGGCC
CCACCCTAGATCCTTGTTTGTGATTTCGTAATGTCCAGCTTGCTCCTTCC
TCATGTTCTCCTTCTGAATGTCCTGCGATCCCAAGGAGCCTATAGGCAAA
CACGGACAGGGTCGTTCTTTTTCCCCTTGTTTTCCTCCTTTGGTGAATAA
TATATATATATATGTATTTTTTTTGTCACTGCACCGATCGTGATTTTCTT
TCATTTTTTGTACGTCAGGTGGAACGAAGCGGTGAAGTCAGCATCAGCAC
TGGCAAAGCTCTGCGATGCGCGCGGCATGGCTCCCCAATACGCTCGCGTC
CTGCTGGAGCTATCCCGCGCGAGGCTAGGCGCTGAACCCCTCTCTCCTGT
TGGAGCGCTGCCGTACGCGCTGAGGTGCTTGGCGGTTTGCGACAGTTACT
CGCTGGATGCGATCCACGCGACTGCTATGACTCACCTGGCTGAGGTTAGT
TTTGCTTCTACTGTAGTAGTGGAGCTCACTTTTGCCCTTTTGACAGAGAT
CTGCAGTGGTCGGTTTGGTCAGCCGTGTTTTGATGTCCTGTAACACGTAC
ACTGTCGTTGATCGTCCGTTTATGGTCGGATATGTGATCGATGGACGCGA
GTCGAATGGGTTATCTGAAGGGAGGCATTTGCCCCCCCTTGAAACGCTTT
GAGCATGCTTTCACTTCCTTTGGGTCTCTCTCGGTTGCTTTTTACGTGTC
CTCCCCGCCCCCGCCCCTCTCTCATACACACCCTCAGATATGTACGATTT
GAGCCCGGCAGAAATATTGACGCGCTGTACATGCAAAAGCTCCCATATCG
ACAAACAGAACGCAGATCACGGCATTCGCTTGGTGATGCCTATGGGTGTC
AATTGTGAAACCCTTACCCACGTTTTTCAAATTGAGTGCGTGATTGAGAA
GCGAGTTCTGCACGTTGGACGCACGAAGTCCACCTCAAGAGTCAAGTTAT
GGCATCATGGGCCCGTCTCATTTGACTTTGGCATATGTTACGGTATCATG
GGTACATCTAGTATGACTTGAGCACATATTAGTCACACAAGTTTATGTTC
CAACTTCATCACGCATGCGTGTGTGCACTTGCACATACGGTACGCTAGTA
TGTTTTGACTGTGTGAGTTGCCTTTTTCCCGGCAAGTGTTGCAGCTTTTT
TTAACAAGTCTGACTATATATTCAATGACAAGCATGCACGTAGTGATATT
CCGAAGCCGCTTCCTGGTTGATGTCGTCCTTCATGGATACTCCAGCTCAT
CCCGTGATGATGTGAAATCGCATGTAGATAGGCAGAGGTCAGGAATATGT
AGGATCACAGGCAGAACAGTCTTCTACACTAATTTCTGCAATCAGAACGG
ACTCCAAACTGTAACTCGTTGTTCACTGAGAAGCCGGCGTAGCACCGCAG
GACGATCCACTTAAGTGTACAGAACATATCTGAGCAAACGTATTCCAATC
GCGCACAATAGTACTAGCTTGACACTAGCCACAGCTGTCTGTTATAACGG
TCTCATGATTTGAATGTCCTGTACACAAAAGTTTCAACTCGTTTCCTTCG
TTAAGTTTCACACGTCATTCGTCGATCTTTTTCATCTTGATCAATGCTGA
TGTTGATCCGGATGTTTCTTGCTTTCTGGTCGATATTCTGATCGGCGAGC
TGTTTAAAACACGGGGTGATACTCATTGGAATTCATTTTGTTGTGTGAGC
ACGATTGCATGATATATGTATATATATGTATATATTCATTGATCTTTTCT
GCCTTGATATATTCCATTTCATTCCTGTTACTATCATGATTTATTTGTTG
TTGAATATGATTATATTCAGTAATGTGTTTGTGTTCAGAGTCCCTTGCAG
CATTACACCTTGTTGGTAGCATTTATTAATTTTCATCTTAAGTACTGTAC
CCTCACCTTCCCCCGTCCGCGCGCGCGATCCCTTATCCGAACCCCTGGTG
GGCACAGGTCCATCTCCGGCTGGGATCAACTCGACGTGCACGCATCCTCT
TGCGGGCGTGCCTGGGTCACCTGCTGTCAAACGCCTCGGTCCAAACCCAG
GCGGAGGCTTGGTTAGCAATGGCCAAGTGTGACATCACCGAGTTTTCTCT
GTCTGCTGAAAAGACCCGTGATGCTGACTCCACGTTTCGAGCTGATAATG
CTGGCGGTGCCGGAGAGAGTGAGGGCCGAGAAGGAGAAGAGGGGGAGGGG
AAGGCAGGAGAAGGACAGCGTGAGAGGCAGTGGGGGGGGGACGGGGACAG
TGTGGCGGTAGGGCAAGGGGGAAAGGCTGAGCTGCTGCATCGTTCGGCGG
AGTACCTGGACAAGGCAATTGTACTGTTCAAGCGGTGTCACGACTTCGCG
GGCCTCCGGGAGTGTTGGTGCCTCAAGGTATGCGTTTCTGTCAAAAATTA
TGTGTAGGGTGCGAGTGGATCGCCTGTTATCTGTTTCTGTTCTGCTTCAT
GGTGTTTTTGCGTTTGTCGTGGCGTGGCATTTGTGTTCCCGCAAGGGACG
GGCACGTATGTAGAGACGCCTGCTTGTTTTGTTCGTTTTATGTGCTATGT
AATGTTCCTGCACTGTCGCCGAACCAATGGGTGTTGCTTTGTACTAATCG
ACCCGGCATACCAGAACGCATTATATGGTGAACTAGCACTAGTGATTGTG
CCCACGGCGACGCTGGTGGAGTCCCGGTGGGTCCGCTCGCTACGCTCGCC
AGTCGCCAGTGATGCTGTGCATTAGCTCATGTGGAAAAACAGGAAACAAA
ATGACTTCATCACCATCATCACCATCATCATCATGACAATTTCCGTACTA
CCACGTAGTTTTCGAGCGTACAAAGCACCGACTCGTCAGAGAGGCGCTAA
CGCCTAACCCCATCTCGCTATTGCCCTCACGCGTGTCCCCTACCATCCTC
CAAGCAGGCCCGCGTATGTGGCGAGTTGGTGGAACAAGGAGGGCCATTGG
AAAACGAAGCGCGTCAGGCTAGAGATGAATCGGCGGAGGCGTTCTTAGCG
GTGTTGGAAGCAGGGGCTAGAGCGCTAGCGTCTACGCCCCCCGGTCTGAA
AATCGGCCCGGAGGAAATCAAGAGATACGTTGCAAGGGCCACATCTGACG
TCCCATGGCAACGGTGAAAGTGTCGGTGTACCAGATACAGTAGTGTTGGA
TCCTGCAGGAGTGGGTGTAGTAGTCTGTGCTCTGAAAGTTTCGTCCGGGT
TGGTGCTTTCTGTTTAGTGCTGGTTTTTCTTTACATTTTGTGACGTTTCC
GTTGAGGTGGTGGATGGTTTGTACGTTAACAAAATTGAACAGTACGGTGG
TACGAGGACAAGGTTTTAGGTGTAAACAAGTTCTATTAACGCAGTGGTCC
CTATTCAAAAAGACTTTACCGTACTGCAAAAGACGAGCTCGGAAAGTCTC
TTGTTTGTGCTGTTCTGCGCGCACGCGGTTTTTTGTCCGTTTTCCACTGG
GCTATGACCCCTCTATTCCTCTCTTTCCGCTAACGCGACTGCCAGCACAG
CCCACAGTTACCTCAACATGAGCATATTTTGTCGGGCTACTCTCGATATA
TGAGGCCGTAACAGTCGTAGTGCCCCTACCCGCAGCCACCACATCAAAAG
GTAACTTGGGGCCAGTCCTAAC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10048:3..5324+

>mRNA_H-fluviatilis_contig10048.157.1 ID=mRNA_H-fluviatilis_contig10048.157.1|Name=mRNA_H-fluviatilis_contig10048.157.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=2028bp|location=Sequence derived from alignment at H-fluviatilis_contig10048:3..5324+ (Heribaudiella fluviatilis SAG_13_90)
ATGGTCTTGCTCCATGAGTGGATGGTCAACCGCGGGGAACTCGGTGCTGC
GGAAGGATGGTCTTGCTCCATGAGTGGATGGTCAACCGCGGGGAACTCGG
TGCTGCGGAAGGGCTCGGGATGAGCCTCCGAGCGTGCTGTCCGCTCAGTC
GAGGTGCCGAAGCCTTTGTCGAGGCGCATTTGCAGCGTGTGCGGCTTCTG
CGGGCCCAGAGCAGGCTCGGGATGAGCCTCCGAGCGTGCTGTCCGCTCAG
TCGAGGTGCCGAAGCCTTTGTCGAGGCGCATTTGCAGCGTGTGCGGCTTC
TGCGGGCCCAGAGCAGGTGGAACGAAGCGGTGAAGTCAGCATCAGCACTG
GCAAAGCTCTGCGATGCGCGCGGCATGGCTCCCCAATACGCTCGCGTCCT
GCTGGAGCTATCCCGCGCGAGGCTAGGCGCTGAACCCCTCTCTCCTGTTG
GAGCGCTGCCGTACGCGCTGAGGTGCTTGGCGGTTTGCGACAGTTACTCG
CTGGATGCGATCCACGCGACTGCTATGACTCACCTGGCTGAGGTGGAACG
AAGCGGTGAAGTCAGCATCAGCACTGGCAAAGCTCTGCGATGCGCGCGGC
ATGGCTCCCCAATACGCTCGCGTCCTGCTGGAGCTATCCCGCGCGAGGCT
AGGCGCTGAACCCCTCTCTCCTGTTGGAGCGCTGCCGTACGCGCTGAGGT
GCTTGGCGGTTTGCGACAGTTACTCGCTGGATGCGATCCACGCGACTGCT
ATGACTCACCTGGCTGAGGTCCATCTCCGGCTGGGATCAACTCGACGTGC
ACGCATCCTCTTGCGGGCGTGCCTGGGTCACCTGCTGTCAAACGCCTCGG
TCCAAACCCAGGCGGAGGCTTGGTTAGCAATGGCCAAGTGTGACATCACC
GAGTTTTCTCTGTCTGCTGAAAAGACCCGTGATGCTGACTCCACGTTTCG
AGCTGATAATGCTGGCGGTGCCGGAGAGAGTGAGGGCCGAGAAGGAGAAG
AGGGGGAGGGGAAGGCAGGAGAAGGACAGCGTGAGAGGCAGTGGGGGGGG
GACGGGGACAGTGTGGCGGTAGGGCAAGGGGGAAAGGCTGAGCTGCTGCA
TCGTTCGGCGGAGTACCTGGACAAGGCAATTGTACTGTTCAAGCGGTGTC
ACGACTTCGCGGGCCTCCGGGAGTGTTGGTGCCTCAAGGTCCATCTCCGG
CTGGGATCAACTCGACGTGCACGCATCCTCTTGCGGGCGTGCCTGGGTCA
CCTGCTGTCAAACGCCTCGGTCCAAACCCAGGCGGAGGCTTGGTTAGCAA
TGGCCAAGTGTGACATCACCGAGTTTTCTCTGTCTGCTGAAAAGACCCGT
GATGCTGACTCCACGTTTCGAGCTGATAATGCTGGCGGTGCCGGAGAGAG
TGAGGGCCGAGAAGGAGAAGAGGGGGAGGGGAAGGCAGGAGAAGGACAGC
GTGAGAGGCAGTGGGGGGGGGACGGGGACAGTGTGGCGGTAGGGCAAGGG
GGAAAGGCTGAGCTGCTGCATCGTTCGGCGGAGTACCTGGACAAGGCAAT
TGTACTGTTCAAGCGGTGTCACGACTTCGCGGGCCTCCGGGAGTGTTGGT
GCCTCAAGGCCCGCGTATGTGGCGAGTTGGTGGAACAAGGAGGGCCATTG
GAAAACGAAGCGCGTCAGGCTAGAGATGAATCGGCGGAGGCGTTCTTAGC
GGTGTTGGAAGCAGGGGCTAGAGCGCTAGCGTCTACGCCCCCCGGTCTGA
AAATCGGCCCGGAGGAAATCAAGAGATACGTTGCAAGGGCCACATCTGAC
GTCCCATGGCAACGGTGAGCCCGCGTATGTGGCGAGTTGGTGGAACAAGG
AGGGCCATTGGAAAACGAAGCGCGTCAGGCTAGAGATGAATCGGCGGAGG
CGTTCTTAGCGGTGTTGGAAGCAGGGGCTAGAGCGCTAGCGTCTACGCCC
CCCGGTCTGAAAATCGGCCCGGAGGAAATCAAGAGATACGTTGCAAGGGC
CACATCTGACGTCCCATGGCAACGGTGA
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