mRNA_H-fluviatilis_contig100415.145.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100415.145.1
Unique NamemRNA_H-fluviatilis_contig100415.145.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Match: A0A2I9DW08_9FLAO (Phthiocerol synthesis polyketide synthase type I PpsC n=4 Tax=Arenibacter TaxID=178469 RepID=A0A2I9DW08_9FLAO)

HSP 1 Score: 298 bits (762), Expect = 1.710e-99
Identity = 147/157 (93.63%), Postives = 152/157 (96.82%), Query Frame = 1 
Query:    1 TIGLQLAKLYNCEVTGVDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGTSIPN 471
            TIGLQLA+LYNCEVTGVDSQEKLAMMTSLGYD+VIDYKKVNFT+AGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSN GLEYI ELLEQGKIKCQIDGPYPLEDA+RLIQYFGDGKHKG  + N
Sbjct:  165 TIGLQLARLYNCEVTGVDSQEKLAMMTSLGYDYVIDYKKVNFTKAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNFGLEYIYELLEQGKIKCQIDGPYPLEDALRLIQYFGDGKHKGKIVMN 321
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BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Match: UPI001E56D9EB (zinc-binding dehydrogenase n=1 Tax=Arenibacter algicola TaxID=616991 RepID=UPI001E56D9EB)

HSP 1 Score: 269 bits (687), Expect = 1.040e-90
Identity = 132/141 (93.62%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:   49 VDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGTSIPN 471
            +DSQEKLAMMTSLGYD+VIDYKKVNFT+AGETY+LILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSN GLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKG  + N
Sbjct:    1 MDSQEKLAMMTSLGYDYVIDYKKVNFTKAGETYNLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNFGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGKIVMN 141
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BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Match: A0A1M4VJV5_9FLAO (NADPH:quinone reductase n=4 Tax=Arenibacter TaxID=178469 RepID=A0A1M4VJV5_9FLAO)

HSP 1 Score: 263 bits (672), Expect = 7.550e-86
Identity = 123/155 (79.35%), Postives = 142/155 (91.61%), Query Frame = 1 
Query:    1 TIGLQLAKLYNCEVTGVDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGTSI 465
            TIGLQ+AKLYNCEVTGVDSQEKLAMMTSLG+DHV+DYKKVNFT+AGE YDLILDC++NKA+LSYLKAL P G+YV+IGGK   L+ +LLWGK++PLFSSK+LK+LALKSN+GLEYIC+LL Q KI+CQIDGPYPLEDA RLIQYFGD KHKG  +
Sbjct:  164 TIGLQIAKLYNCEVTGVDSQEKLAMMTSLGFDHVLDYKKVNFTKAGERYDLILDCRSNKASLSYLKALNPTGRYVSIGGKPFNLIGLLLWGKLVPLFSSKRLKILALKSNIGLEYICDLLAQQKIRCQIDGPYPLEDAGRLIQYFGDAKHKGKIV 318
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BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Match: A0A1X7JQS3_9FLAO (NADPH:quinone reductase n=1 Tax=Arenibacter troitsensis TaxID=188872 RepID=A0A1X7JQS3_9FLAO)

HSP 1 Score: 263 bits (671), Expect = 1.070e-85
Identity = 122/155 (78.71%), Postives = 142/155 (91.61%), Query Frame = 1 
Query:    1 TIGLQLAKLYNCEVTGVDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGTSI 465
            TIGLQ+AKLYNCEVTGVDSQEKLAMMTSLGYDHV+DYKKVNFT+AGE YDLILDC++NKA+LSYLKAL P G+YV+IGGK   L+ +LLWGK++PLFSSK+LK+LALKSN+GL+YIC+LL Q KI+CQIDGPYPLEDA RL+QYFGD KHKG  +
Sbjct:  164 TIGLQIAKLYNCEVTGVDSQEKLAMMTSLGYDHVLDYKKVNFTKAGELYDLILDCRSNKASLSYLKALNPTGRYVSIGGKPLNLIGLLLWGKLVPLFSSKRLKILALKSNIGLDYICDLLAQQKIRCQIDGPYPLEDAGRLLQYFGDAKHKGKIV 318
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BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Match: UPI000CD3EBB2 (NAD(P)-dependent alcohol dehydrogenase n=2 Tax=Arenibacter TaxID=178469 RepID=UPI000CD3EBB2)

HSP 1 Score: 255 bits (651), Expect = 1.390e-82
Identity = 119/155 (76.77%), Postives = 140/155 (90.32%), Query Frame = 1 
Query:    1 TIGLQLAKLYNCEVTGVDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGTSI 465
            TIGLQLAKL+NC+VTGVD+QEKLAMMT++GYD VIDYKKVNFT+AGE YDLILDCK+NKA L+YLKAL PNG+YV+IGGK   L+ +LLWGK++PL SSK LK+LALKSN+GL+YIC+L+ Q KIKCQIDGPYPLEDA RLIQYFG+GKHKG  +
Sbjct:  165 TIGLQLAKLHNCQVTGVDAQEKLAMMTAIGYDQVIDYKKVNFTQAGERYDLILDCKSNKAPLTYLKALNPNGRYVSIGGKPFNLIGLLLWGKLVPLLSSKSLKILALKSNIGLDYICDLMAQQKIKCQIDGPYPLEDAGRLIQYFGEGKHKGKIV 319
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BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Match: UPI00165627BC (NAD(P)-dependent alcohol dehydrogenase n=1 Tax=Arenibacter arenosicollis TaxID=2762274 RepID=UPI00165627BC)

HSP 1 Score: 251 bits (642), Expect = 3.210e-81
Identity = 118/155 (76.13%), Postives = 141/155 (90.97%), Query Frame = 1 
Query:    1 TIGLQLAKLYNCEVTGVDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGTSI 465
            TIGLQLAKL+NC VTGVDSQEKLA+MT++GYD VIDYKKVNFT+AG+ YDLILDCK+NKA+L+YLKAL PNG+YV+IGGK   L+ +LLWGK++PLFSSK+LK+LALKSN GLE+IC+LL Q KI+CQIDGPYP+EDA RLIQYFG+GKHKG  +
Sbjct:  165 TIGLQLAKLHNCAVTGVDSQEKLAIMTAIGYDQVIDYKKVNFTKAGKRYDLILDCKSNKASLTYLKALNPNGRYVSIGGKPFNLIGLLLWGKLMPLFSSKRLKILALKSNSGLEFICDLLAQRKIQCQIDGPYPMEDAGRLIQYFGEGKHKGKIV 319
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BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Match: A0A318IK18_9FLAO (NADPH:quinone reductase-like Zn-dependent oxidoreductase n=1 Tax=Arenibacter sp. ARW7G5Y1 TaxID=2135619 RepID=A0A318IK18_9FLAO)

HSP 1 Score: 246 bits (627), Expect = 5.150e-79
Identity = 115/155 (74.19%), Postives = 137/155 (88.39%), Query Frame = 1 
Query:    1 TIGLQLAKLYNCEVTGVDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGTSI 465
            TIGLQLAKL+NCEVTGVDSQEKL MMTSLG+D VIDYKK NFTR G+ YDLILDCK+NKA+LSYLKAL   G+YV+IGG+   L+ +LLWGK++PLFS+K+LK+LALKSN+GL+YIC+L+ Q KI+C IDGPYPLEDA RLIQYFG+GKHKG  +
Sbjct:  165 TIGLQLAKLHNCEVTGVDSQEKLPMMTSLGFDQVIDYKKTNFTRIGKRYDLILDCKSNKASLSYLKALNRKGRYVSIGGRPFNLIGLLLWGKLVPLFSTKRLKILALKSNIGLDYICDLIVQQKIRCHIDGPYPLEDAGRLIQYFGEGKHKGKIV 319
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BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Match: A0A372GWS6_9FLAO (NAD(P)-dependent alcohol dehydrogenase n=1 Tax=Arenibacter sp. P308M17 TaxID=2303391 RepID=A0A372GWS6_9FLAO)

HSP 1 Score: 245 bits (626), Expect = 7.290e-79
Identity = 113/157 (71.97%), Postives = 139/157 (88.54%), Query Frame = 1 
Query:    1 TIGLQLAKLYNCEVTGVDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGTSIPN 471
            TIGLQLAKLYNCEVTGVD+QEKL MMT+LGYDHV+DYKKVNFT+AG  YDLILDCK+NKA+L+YL AL P+G+Y++IGGK   L+ +LLWGK++PLFSSK+LK+LALK N+GL+YIC+L+ Q KI+ QIDGPY LEDA RLIQYFG+G+H+G  + N
Sbjct:  165 TIGLQLAKLYNCEVTGVDAQEKLGMMTALGYDHVMDYKKVNFTQAGNRYDLILDCKSNKASLTYLNALNPSGQYISIGGKPFNLIGLLLWGKLVPLFSSKRLKILALKPNIGLDYICDLIAQQKIRSQIDGPYTLEDAGRLIQYFGEGRHEGKIVMN 321
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BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Match: A0A1I1AZB7_9BACT (NADPH:quinone reductase n=2 Tax=Algoriphagus aquimarinus TaxID=237018 RepID=A0A1I1AZB7_9BACT)

HSP 1 Score: 221 bits (564), Expect = 1.760e-69
Identity = 107/155 (69.03%), Postives = 126/155 (81.29%), Query Frame = 1 
Query:    1 TIGLQLAKLYNCEVTGVDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGTSI 465
            TIGLQLAKL NCEV+GVDS EKLAMM SLGYD VIDYKKV+FT+ GE YD+ILDCK+NK+  SYL+ALKP G YVTIGG LS L+ VL W KI  LFSSK+L++L+LK N GL+ I +L+ Q KI  +IDGPYPL+D  RLIQYFG+GKHKG  +
Sbjct:  165 TIGLQLAKLSNCEVSGVDSGEKLAMMKSLGYDQVIDYKKVDFTKTGEHYDIILDCKSNKSPFSYLRALKPTGIYVTIGGNLSSLISVLFWSKIFSLFSSKRLQILSLKPNEGLDEIAQLIIQNKISPEIDGPYPLQDTARLIQYFGEGKHKGKIV 319
[Close]
BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Match: A0A2W7RMP4_9BACT (NADPH:quinone reductase-like Zn-dependent oxidoreductase n=1 Tax=Algoriphagus chordae TaxID=237019 RepID=A0A2W7RMP4_9BACT)

HSP 1 Score: 219 bits (557), Expect = 2.010e-68
Identity = 104/155 (67.10%), Postives = 128/155 (82.58%), Query Frame = 1 
Query:    1 TIGLQLAKLYNCEVTGVDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYDLILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSKKLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKHKGTSI 465
            TIGLQLAKL++CEVTGVDS EKL MM SLGYD V+DYKKV+FT+ GE YDLILDCK++K+  SYL+ALKP G YVTIGG L+ L+ +L+WGKI  LFS+K+L++L+LK N GL+ I +L+ Q KI+ QIDG YPLED  RLIQYFG+GKHKG  +
Sbjct:  165 TIGLQLAKLHHCEVTGVDSAEKLTMMKSLGYDQVMDYKKVDFTKTGELYDLILDCKSSKSPFSYLRALKPTGIYVTIGGNLTSLISILIWGKIFSLFSAKRLQILSLKPNEGLDEIAQLVIQNKIQPQIDGRYPLEDTARLIQYFGEGKHKGKVV 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100415.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I9DW08_9FLAO1.710e-9993.63Phthiocerol synthesis polyketide synthase type I P... [more]
UPI001E56D9EB1.040e-9093.62zinc-binding dehydrogenase n=1 Tax=Arenibacter alg... [more]
A0A1M4VJV5_9FLAO7.550e-8679.35NADPH:quinone reductase n=4 Tax=Arenibacter TaxID=... [more]
A0A1X7JQS3_9FLAO1.070e-8578.71NADPH:quinone reductase n=1 Tax=Arenibacter troits... [more]
UPI000CD3EBB21.390e-8276.77NAD(P)-dependent alcohol dehydrogenase n=2 Tax=Are... [more]
UPI00165627BC3.210e-8176.13NAD(P)-dependent alcohol dehydrogenase n=1 Tax=Are... [more]
A0A318IK18_9FLAO5.150e-7974.19NADPH:quinone reductase-like Zn-dependent oxidored... [more]
A0A372GWS6_9FLAO7.290e-7971.97NAD(P)-dependent alcohol dehydrogenase n=1 Tax=Are... [more]
A0A1I1AZB7_9BACT1.760e-6969.03NADPH:quinone reductase n=2 Tax=Algoriphagus aquim... [more]
A0A2W7RMP4_9BACT2.010e-6867.10NADPH:quinone reductase-like Zn-dependent oxidored... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100415contigH-fluviatilis_contig100415:2..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score295.8
Seed ortholog evalue1.2e-77
Seed eggNOG ortholog616991.JPOO01000003_gene1896
EggNOG free text desc.Zinc-binding dehydrogenase
EggNOG OGs1IIKA@117743,23FV6@178469,4NJ5X@976,COG0604@1,COG0604@2
COG Functional cat.C
Best tax levelArenibacter
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929011.4880354-CDS-H-fluviatilis_contig100415:1..4721622929011.4880354-CDS-H-fluviatilis_contig100415:1..472Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100415 2..472 +
1691135148.3479214-CDS-H-fluviatilis_contig100415:1..4721691135148.3479214-CDS-H-fluviatilis_contig100415:1..472Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100415 2..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100415.145.1prot_H-fluviatilis_contig100415.145.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100415 2..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100415.145.1

>prot_H-fluviatilis_contig100415.145.1 ID=prot_H-fluviatilis_contig100415.145.1|Name=mRNA_H-fluviatilis_contig100415.145.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=157bp
TIGLQLAKLYNCEVTGVDSQEKLAMMTSLGYDHVIDYKKVNFTRAGETYD
LILDCKTNKAALSYLKALKPNGKYVTIGGKLSGLLKVLLWGKIIPLFSSK
KLKVLALKSNVGLEYICELLEQGKIKCQIDGPYPLEDAVRLIQYFGDGKH
KGTSIPN
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mRNA from alignment at H-fluviatilis_contig100415:2..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100415.145.1 ID=mRNA_H-fluviatilis_contig100415.145.1|Name=mRNA_H-fluviatilis_contig100415.145.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=471bp|location=Sequence derived from alignment at H-fluviatilis_contig100415:2..472+ (Heribaudiella fluviatilis SAG_13_90)
ACCATTGGCCTTCAACTGGCAAAACTTTACAACTGTGAGGTTACCGGAGT
TGATTCCCAAGAGAAATTGGCCATGATGACATCGCTCGGTTATGACCATG
TAATCGACTATAAAAAGGTGAATTTCACCAGAGCGGGGGAAACGTACGAC
CTCATCCTGGATTGTAAGACCAATAAGGCTGCCCTCTCCTACCTCAAAGC
CTTAAAACCTAATGGAAAATATGTGACTATTGGCGGCAAATTGTCCGGTT
TATTAAAAGTACTGCTGTGGGGCAAAATTATACCACTATTCTCTTCCAAA
AAATTAAAGGTACTCGCCTTAAAATCGAACGTTGGTTTAGAATATATCTG
TGAACTATTGGAACAGGGAAAAATCAAATGCCAAATAGATGGTCCGTATC
CTTTGGAAGATGCAGTGCGATTGATCCAATATTTTGGAGATGGAAAGCAT
AAGGGAACATCAATCCCTAAT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100415:2..472+

>mRNA_H-fluviatilis_contig100415.145.1 ID=mRNA_H-fluviatilis_contig100415.145.1|Name=mRNA_H-fluviatilis_contig100415.145.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=942bp|location=Sequence derived from alignment at H-fluviatilis_contig100415:2..472+ (Heribaudiella fluviatilis SAG_13_90)
ACCATTGGCCTTCAACTGGCAAAACTTTACAACTGTGAGGTTACCGGAGT
TGATTCCCAAGAGAAATTGGCCATGATGACATCGCTCGGTTATGACCATG
TAATCGACTATAAAAAGGTGAATTTCACCAGAGCGGGGGAAACGTACGAC
CTCATCCTGGATTGTAAGACCAATAAGGCTGCCCTCTCCTACCTCAAAGC
CTTAAAACCTAATGGAAAATATGTGACTATTGGCGGCAAATTGTCCGGTT
TATTAAAAGTACTGCTGTGGGGCAAAATTATACCACTATTCTCTTCCAAA
AAATTAAAGGTACTCGCCTTAAAATCGAACGTTGGTTTAGAATATATCTG
TGAACTATTGGAACAGGGAAAAATCAAATGCCAAATAGATGGTCCGTATC
CTTTGGAAGATGCAGTGCGATTGATCCAATATTTTGGAGATGGAAAGCAT
AAGGGAACATCAATCCCTAATACCATTGGCCTTCAACTGGCAAAACTTTA
CAACTGTGAGGTTACCGGAGTTGATTCCCAAGAGAAATTGGCCATGATGA
CATCGCTCGGTTATGACCATGTAATCGACTATAAAAAGGTGAATTTCACC
AGAGCGGGGGAAACGTACGACCTCATCCTGGATTGTAAGACCAATAAGGC
TGCCCTCTCCTACCTCAAAGCCTTAAAACCTAATGGAAAATATGTGACTA
TTGGCGGCAAATTGTCCGGTTTATTAAAAGTACTGCTGTGGGGCAAAATT
ATACCACTATTCTCTTCCAAAAAATTAAAGGTACTCGCCTTAAAATCGAA
CGTTGGTTTAGAATATATCTGTGAACTATTGGAACAGGGAAAAATCAAAT
GCCAAATAGATGGTCCGTATCCTTTGGAAGATGCAGTGCGATTGATCCAA
TATTTTGGAGATGGAAAGCATAAGGGAACATCAATCCCTAAT
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