mRNA_H-fluviatilis_contig10040.139.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10040.139.1
Unique NamemRNA_H-fluviatilis_contig10040.139.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10040.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10040contigH-fluviatilis_contig10040:5655..6418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size764
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10040.139.1prot_H-fluviatilis_contig10040.139.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10040 5876..6394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929004.251744-UTR-H-fluviatilis_contig10040:5654..58751622929004.251744-UTR-H-fluviatilis_contig10040:5654..5875Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10040 5655..5875 +
1691135148.1759036-UTR-H-fluviatilis_contig10040:5654..58751691135148.1759036-UTR-H-fluviatilis_contig10040:5654..5875Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10040 5655..5875 +
1622929004.2791958-UTR-H-fluviatilis_contig10040:6394..64181622929004.2791958-UTR-H-fluviatilis_contig10040:6394..6418Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10040 6395..6418 +
1691135148.1906178-UTR-H-fluviatilis_contig10040:6394..64181691135148.1906178-UTR-H-fluviatilis_contig10040:6394..6418Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10040 6395..6418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929004.2650967-CDS-H-fluviatilis_contig10040:5875..63941622929004.2650967-CDS-H-fluviatilis_contig10040:5875..6394Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10040 5876..6394 +
1691135148.1832583-CDS-H-fluviatilis_contig10040:5875..63941691135148.1832583-CDS-H-fluviatilis_contig10040:5875..6394Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10040 5876..6394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10040.139.1

>prot_H-fluviatilis_contig10040.139.1 ID=prot_H-fluviatilis_contig10040.139.1|Name=mRNA_H-fluviatilis_contig10040.139.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=173bp
MWTRTPGWQGESGQAFYNNECATRSIFQEKRTTNAMRPMSENIRICLRQS
ELQVGEAALSVRLVVMKVYLFWFMSKNENYYGSYLEMVPCYRCFLVTVCF
HRIALCFPHCSPQGERAAVQGKVILLRAAGWGRGCGDIREQLAPASQLSK
ALLTCIPFHEEYARRVSACSTV*
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mRNA from alignment at H-fluviatilis_contig10040:5655..6418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10040.139.1 ID=mRNA_H-fluviatilis_contig10040.139.1|Name=mRNA_H-fluviatilis_contig10040.139.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=764bp|location=Sequence derived from alignment at H-fluviatilis_contig10040:5655..6418+ (Heribaudiella fluviatilis SAG_13_90)
GCTTCGCAGGGCAGGAAGAATGAGGAAAACCTGTTCGCAGTGAAGCGGCA
GAACTCTAGACTGACGGCAGAGAGCCGTGACAAGCTCCCCAGAAGCCGAA
TGCGAAACCCCCGTTTGTAGATTTTTGTCGCTAATTAAGGTATCGTTGAC
CGGATTTTGTCTTGTGAATAATTTTTGTAGGTGACAAAGTGAAGGATTTT
ATCTCGTTCGCAGTTGTGGTAATGTGGACGAGAACTCCGGGCTGGCAGGG
GGAGTCGGGTCAGGCCTTCTACAATAACGAATGCGCAACGCGATCAATTT
TTCAAGAAAAAAGAACAACGAATGCTATGCGGCCAATGTCTGAAAATATC
AGGATTTGTCTGCGTCAATCAGAATTGCAAGTTGGCGAGGCAGCACTGTC
TGTTCGGCTAGTCGTGATGAAAGTCTACTTATTCTGGTTTATGTCGAAGA
ATGAAAATTATTACGGTTCATATCTTGAGATGGTGCCTTGCTATCGATGT
TTTCTAGTTACTGTATGCTTCCACAGAATTGCACTGTGTTTTCCTCACTG
TAGTCCGCAGGGCGAAAGGGCAGCTGTACAGGGTAAGGTCATCCTGCTAC
GTGCTGCGGGATGGGGTAGAGGTTGCGGGGATATTCGCGAGCAGCTCGCG
CCCGCTTCACAACTTTCGAAGGCCCTGTTAACTTGTATCCCTTTCCATGA
AGAATATGCTCGTCGTGTGTCCGCGTGTTCCACGGTCTGATGGTCTCTTT
CTCTATTGTGTGTG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10040:5655..6418+

>mRNA_H-fluviatilis_contig10040.139.1 ID=mRNA_H-fluviatilis_contig10040.139.1|Name=mRNA_H-fluviatilis_contig10040.139.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1038bp|location=Sequence derived from alignment at H-fluviatilis_contig10040:5655..6418+ (Heribaudiella fluviatilis SAG_13_90)
ATGTGGACGAGAACTCCGGGCTGGCAGGGGGAGTCGGGTCAGGCCTTCTA
CAATAACGAATGCGCAACGCGATCAATTTTTCAAGAAAAAAGAACAACGA
ATGCTATGCGGCCAATGTCTGAAAATATCAGGATTTGTCTGCGTCAATCA
GAATTGCAAGTTGGCGAGGCAGCACTGTCTGTTCGGCTAGTCGTGATGAA
AGTCTACTTATTCTGGTTTATGTCGAAGAATGAAAATTATTACGGTTCAT
ATCTTGAGATGGTGCCTTGCTATCGATGTTTTCTAGTTACTGTATGCTTC
CACAGAATTGCACTGTGTTTTCCTCACTGTAGTCCGCAGGGCGAAAGGGC
AGCTGTACAGGGTAAGGTCATCCTGCTACGTGCTGCGGGATGGGGTAGAG
GTTGCGGGGATATTCGCGAGCAGCTCGCGCCCGCTTCACAACTTTCGAAG
GCCCTGTTAACTTGTATCCCTTTCCATGAAGAATATGCTCGTCGTGTGTC
CGCGTGTTCCACGGTCTGAATGTGGACGAGAACTCCGGGCTGGCAGGGGG
AGTCGGGTCAGGCCTTCTACAATAACGAATGCGCAACGCGATCAATTTTT
CAAGAAAAAAGAACAACGAATGCTATGCGGCCAATGTCTGAAAATATCAG
GATTTGTCTGCGTCAATCAGAATTGCAAGTTGGCGAGGCAGCACTGTCTG
TTCGGCTAGTCGTGATGAAAGTCTACTTATTCTGGTTTATGTCGAAGAAT
GAAAATTATTACGGTTCATATCTTGAGATGGTGCCTTGCTATCGATGTTT
TCTAGTTACTGTATGCTTCCACAGAATTGCACTGTGTTTTCCTCACTGTA
GTCCGCAGGGCGAAAGGGCAGCTGTACAGGGTAAGGTCATCCTGCTACGT
GCTGCGGGATGGGGTAGAGGTTGCGGGGATATTCGCGAGCAGCTCGCGCC
CGCTTCACAACTTTCGAAGGCCCTGTTAACTTGTATCCCTTTCCATGAAG
AATATGCTCGTCGTGTGTCCGCGTGTTCCACGGTCTGA
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