Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 764 |
| Cds size | 519 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929004.251744-UTR-H-fluviatilis_contig10040:5654..5875 | 1622929004.251744-UTR-H-fluviatilis_contig10040:5654..5875 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10040 5655..5875 + |
| 1691135148.1759036-UTR-H-fluviatilis_contig10040:5654..5875 | 1691135148.1759036-UTR-H-fluviatilis_contig10040:5654..5875 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10040 5655..5875 + |
| 1622929004.2791958-UTR-H-fluviatilis_contig10040:6394..6418 | 1622929004.2791958-UTR-H-fluviatilis_contig10040:6394..6418 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10040 6395..6418 + |
| 1691135148.1906178-UTR-H-fluviatilis_contig10040:6394..6418 | 1691135148.1906178-UTR-H-fluviatilis_contig10040:6394..6418 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10040 6395..6418 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929004.2650967-CDS-H-fluviatilis_contig10040:5875..6394 | 1622929004.2650967-CDS-H-fluviatilis_contig10040:5875..6394 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10040 5876..6394 + |
| 1691135148.1832583-CDS-H-fluviatilis_contig10040:5875..6394 | 1691135148.1832583-CDS-H-fluviatilis_contig10040:5875..6394 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10040 5876..6394 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10040.139.1 >prot_H-fluviatilis_contig10040.139.1 ID=prot_H-fluviatilis_contig10040.139.1|Name=mRNA_H-fluviatilis_contig10040.139.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=173bp
MWTRTPGWQGESGQAFYNNECATRSIFQEKRTTNAMRPMSENIRICLRQS
ELQVGEAALSVRLVVMKVYLFWFMSKNENYYGSYLEMVPCYRCFLVTVCF
HRIALCFPHCSPQGERAAVQGKVILLRAAGWGRGCGDIREQLAPASQLSK
ALLTCIPFHEEYARRVSACSTV* back to topmRNA from alignment at H-fluviatilis_contig10040:5655..6418+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig10040.139.1 ID=mRNA_H-fluviatilis_contig10040.139.1|Name=mRNA_H-fluviatilis_contig10040.139.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=764bp|location=Sequence derived from alignment at H-fluviatilis_contig10040:5655..6418+ (Heribaudiella fluviatilis SAG_13_90)
GCTTCGCAGGGCAGGAAGAATGAGGAAAACCTGTTCGCAGTGAAGCGGCA
GAACTCTAGACTGACGGCAGAGAGCCGTGACAAGCTCCCCAGAAGCCGAA
TGCGAAACCCCCGTTTGTAGATTTTTGTCGCTAATTAAGGTATCGTTGAC
CGGATTTTGTCTTGTGAATAATTTTTGTAGGTGACAAAGTGAAGGATTTT
ATCTCGTTCGCAGTTGTGGTAATGTGGACGAGAACTCCGGGCTGGCAGGG
GGAGTCGGGTCAGGCCTTCTACAATAACGAATGCGCAACGCGATCAATTT
TTCAAGAAAAAAGAACAACGAATGCTATGCGGCCAATGTCTGAAAATATC
AGGATTTGTCTGCGTCAATCAGAATTGCAAGTTGGCGAGGCAGCACTGTC
TGTTCGGCTAGTCGTGATGAAAGTCTACTTATTCTGGTTTATGTCGAAGA
ATGAAAATTATTACGGTTCATATCTTGAGATGGTGCCTTGCTATCGATGT
TTTCTAGTTACTGTATGCTTCCACAGAATTGCACTGTGTTTTCCTCACTG
TAGTCCGCAGGGCGAAAGGGCAGCTGTACAGGGTAAGGTCATCCTGCTAC
GTGCTGCGGGATGGGGTAGAGGTTGCGGGGATATTCGCGAGCAGCTCGCG
CCCGCTTCACAACTTTCGAAGGCCCTGTTAACTTGTATCCCTTTCCATGA
AGAATATGCTCGTCGTGTGTCCGCGTGTTCCACGGTCTGATGGTCTCTTT
CTCTATTGTGTGTG back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig10040:5655..6418+ >mRNA_H-fluviatilis_contig10040.139.1 ID=mRNA_H-fluviatilis_contig10040.139.1|Name=mRNA_H-fluviatilis_contig10040.139.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1038bp|location=Sequence derived from alignment at H-fluviatilis_contig10040:5655..6418+ (Heribaudiella fluviatilis SAG_13_90)
ATGTGGACGAGAACTCCGGGCTGGCAGGGGGAGTCGGGTCAGGCCTTCTA
CAATAACGAATGCGCAACGCGATCAATTTTTCAAGAAAAAAGAACAACGA
ATGCTATGCGGCCAATGTCTGAAAATATCAGGATTTGTCTGCGTCAATCA
GAATTGCAAGTTGGCGAGGCAGCACTGTCTGTTCGGCTAGTCGTGATGAA
AGTCTACTTATTCTGGTTTATGTCGAAGAATGAAAATTATTACGGTTCAT
ATCTTGAGATGGTGCCTTGCTATCGATGTTTTCTAGTTACTGTATGCTTC
CACAGAATTGCACTGTGTTTTCCTCACTGTAGTCCGCAGGGCGAAAGGGC
AGCTGTACAGGGTAAGGTCATCCTGCTACGTGCTGCGGGATGGGGTAGAG
GTTGCGGGGATATTCGCGAGCAGCTCGCGCCCGCTTCACAACTTTCGAAG
GCCCTGTTAACTTGTATCCCTTTCCATGAAGAATATGCTCGTCGTGTGTC
CGCGTGTTCCACGGTCTGAATGTGGACGAGAACTCCGGGCTGGCAGGGGG
AGTCGGGTCAGGCCTTCTACAATAACGAATGCGCAACGCGATCAATTTTT
CAAGAAAAAAGAACAACGAATGCTATGCGGCCAATGTCTGAAAATATCAG
GATTTGTCTGCGTCAATCAGAATTGCAAGTTGGCGAGGCAGCACTGTCTG
TTCGGCTAGTCGTGATGAAAGTCTACTTATTCTGGTTTATGTCGAAGAAT
GAAAATTATTACGGTTCATATCTTGAGATGGTGCCTTGCTATCGATGTTT
TCTAGTTACTGTATGCTTCCACAGAATTGCACTGTGTTTTCCTCACTGTA
GTCCGCAGGGCGAAAGGGCAGCTGTACAGGGTAAGGTCATCCTGCTACGT
GCTGCGGGATGGGGTAGAGGTTGCGGGGATATTCGCGAGCAGCTCGCGCC
CGCTTCACAACTTTCGAAGGCCCTGTTAACTTGTATCCCTTTCCATGAAG
AATATGCTCGTCGTGTGTCCGCGTGTTCCACGGTCTGA back to top
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