mRNA_H-fluviatilis_contig10036.132.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10036.132.1
Unique NamemRNA_H-fluviatilis_contig10036.132.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Match: A0A061QQV3_9CHLO (Cell division n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QQV3_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 1.030e-23
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRRAVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGDGGMDTEMRSFPQSE 321
            LR L+QDCI K +Y+SAAFFADKLVTLS  +  DVYLLA+T +L + +RRA++    ++    D    +F+YLAA CL EC EWEECL++LGD  +  E+ +  Q +
Sbjct:   10 LRSLIQDCIEKHLYTSAAFFADKLVTLSNYEPGDVYLLAQTFFLGRNFRRALKLLNQSKTVERD---ARFRYLAARCLFECSEWEECLSMLGDSQVPEEIGAGQQEQ 113
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BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Match: A0A388M6H8_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M6H8_CHABU)

HSP 1 Score: 98.6 bits (244), Expect = 2.220e-23
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRRAVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGDGGMD 291
            LR +V+DC+ K +YSS  FFADKLVT+S +   DV+LL++ +YL K YRRA+   R      AD    +F+YLAA CL E +EW+ECL +LGDG  D
Sbjct:    6 LRSVVRDCLGKHLYSSGIFFADKLVTMSDSAPADVFLLSQAYYLGKHYRRALHLLRQEHLLAAD---ARFRYLAAKCLEEVKEWDECLALLGDGEFD 99
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BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Match: A0A7J7PWQ9_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PWQ9_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 2.410e-23
Identity = 52/101 (51.49%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRRAVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGDGGMDTEMR 303
            LR LVQDCI+K +YS+A F+ADKLVTL+Q    DVYL+A+T+++S+Q+RRAV   +         + ++F+YLAA CL E  EW+ECLT+LGDG +D +++
Sbjct:    6 LRSLVQDCIAKHLYSTAVFYADKLVTLTQYAPGDVYLVAQTYFVSRQHRRAVMLLK----HHGLMEDVRFRYLAAKCLAEVEEWDECLTLLGDGELDDDLQ 102
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BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Match: A0A061RDF5_9CHLO (Anaphase-promoting complex subunit 6 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RDF5_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 3.410e-23
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRRAVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGDGGMDTEMRSFPQSE 321
            LR L+QDCI K +Y+SAAFFADKLVTLS  +  DVYLLA+T +L + +RRA++    ++    D    +F+YLAA CL EC EWEECL++LGD  +  E+ +  Q +
Sbjct:   10 LRSLIQDCIEKHLYTSAAFFADKLVTLSNYEPGDVYLLAQTFFLGRNFRRALKLLNQSKTVERD---ARFRYLAARCLFECSEWEECLSMLGDSQVPEEIGAGQQEQ 113
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BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Match: E1ZN36_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZN36_CHLVA)

HSP 1 Score: 99.8 bits (247), Expect = 9.570e-22
Identity = 60/120 (50.00%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:    1 LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRRAVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGDGGMDTEMRSFPQSEQKPPFSHSHIPEG 360
            LR +V DC++K MY +AAFFADKLVTLS     +VY LA+  + S+Q+RR ++  R T  +L + D L+F+YLAA CL EC+EWEECL+VLG  G+D E    P+  Q P    S +P G
Sbjct:    2 LRSVVHDCLAKHMYEAAAFFADKLVTLSGYSPAEVYTLAQAFFCSRQFRRCLQLLRST--ELIEKD-LRFRYLAARCLAECKEWEECLSVLG--GLDAEE---PEQLQLP-MPRSTVPLG 112
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BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Match: A0A2P6TJ51_CHLSO (Cell division cycle 16-like protein isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TJ51_CHLSO)

HSP 1 Score: 99.8 bits (247), Expect = 1.120e-21
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRRAVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGDGGMDTE 297
            LR +V DC++K MY +AAFFADKLVTLS     +VY LA+  + S+Q+RR ++  R T  +L + D L+F+YLAA CL ECREWE+CLTVLG  G+D E
Sbjct:    9 LRAVVHDCLAKHMYEAAAFFADKLVTLSGYAPAEVYTLAQAFFCSRQFRRCLQLLRGT--ELIEKD-LRFRYLAARCLAECREWEDCLTVLG--GLDVE 102
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BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Match: A0A1Y1HXB8_KLENI (Anaphase-promoting complex n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXB8_KLENI)

HSP 1 Score: 98.2 bits (243), Expect = 3.530e-21
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRRAVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGD 279
            LR +V+D + K +YSSA FFADKLVT+S A   DVYLLA+ +YLSKQY+RA+   R      AD    +F+YLAA CL E +EW+ECL +LGD
Sbjct:    6 LRSVVRDALGKHLYSSAIFFADKLVTVSGAAASDVYLLAQAYYLSKQYQRALHLLRQEHLLTADD---RFKYLAARCLAELKEWDECLVMLGD 95
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BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Match: A0A835VNL7_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835VNL7_VANPL)

HSP 1 Score: 90.9 bits (224), Expect = 1.380e-20
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    1 LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRRAVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGDGGMD 291
            LR LV+DC+SK +YSSA FFADK V ++ +D  D+Y+ A+  +L +QYRRA+     +   L D   L+F+YLAA CL E +EW +CLT+LGD  +D
Sbjct:    9 LRGLVRDCVSKHLYSSAIFFADK-VAVATSDPADIYMQAQALFLGRQYRRALHLLNSSSIVLRD---LRFRYLAAKCLEELKEWHQCLTMLGDAKVD 101
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BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Match: A0A835S384_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S384_VANPL)

HSP 1 Score: 90.9 bits (224), Expect = 1.490e-20
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    1 LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRRAVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGDGGMD 291
            LR LV+DC+SK +YSSA FFADK V ++ +D  D+Y+ A+  +L +QYRRA+     +   L D   L+F+YLAA CL E +EW +CLT+LGD  +D
Sbjct:    9 LRGLVRDCVSKHLYSSAIFFADK-VAVATSDPADIYMQAQALFLGRQYRRALHLLNSSSIVLRD---LRFRYLAAKCLEELKEWHQCLTMLGDAKVD 101
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BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Match: A0A2K1J7S7_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1J7S7_PHYPA)

HSP 1 Score: 96.3 bits (238), Expect = 1.740e-20
Identity = 54/119 (45.38%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:    1 LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRRAVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGDGGMDTEMRSFPQSEQKPPFSHSHIPE 357
            LR +V+DC+ K +YSSA FFADKL TL+    +D+Y+ A+  YL KQYRRA+   R      AD   L+F+YLAA CL E +EW+ECL +LGD  +D E       +Q       +I E
Sbjct:    9 LRAVVRDCLGKHLYSSAIFFADKLATLAGNATQDLYMQAQALYLGKQYRRALHLLRRHHLITAD---LRFRYLAAKCLEEIKEWDECLLMLGDSEVDEEGNLLVMDDQDTELLDKNIEE 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10036.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061QQV3_9CHLO1.030e-2350.47Cell division n=1 Tax=Tetraselmis sp. GSL018 TaxID... [more]
A0A388M6H8_CHABU2.220e-2351.55Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7J7PWQ9_9CHLO2.410e-2351.49Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A061RDF5_9CHLO3.410e-2350.47Anaphase-promoting complex subunit 6 n=1 Tax=Tetra... [more]
E1ZN36_CHLVA9.570e-2250.00Uncharacterized protein (Fragment) n=1 Tax=Chlorel... [more]
A0A2P6TJ51_CHLSO1.120e-2155.56Cell division cycle 16-like protein isoform X1 n=1... [more]
A0A1Y1HXB8_KLENI3.530e-2155.91Anaphase-promoting complex n=1 Tax=Klebsormidium n... [more]
A0A835VNL7_VANPL1.380e-2049.48Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835S384_VANPL1.490e-2049.48Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A2K1J7S7_PHYPA1.740e-2045.38Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10036contigH-fluviatilis_contig10036:7652..8178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.8
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog554065.XP_005845004.1
KEGG koko:K03353
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0006275,GO:0008150,GO:0009888,GO:0009889,GO:0010087,GO:0010556,GO:0010564,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0032875,GO:0048856,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051726,GO:0060255,GO:0065007,GO:0080090,GO:0090329,GO:2000112
EggNOG free text desc.Anaphase-promoting complex, cyclosome, subunit 3
EggNOG OGs34JU7@3041,37HX4@33090,KOG1173@1,KOG1173@2759
COG Functional cat.DO
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size422
Cds size420
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10036.132.1prot_H-fluviatilis_contig10036.132.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10036 7652..8176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.4628277-CDS-H-fluviatilis_contig10036:7651..78341622929003.4628277-CDS-H-fluviatilis_contig10036:7651..7834Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10036 7652..7834 +
1691135147.7729955-CDS-H-fluviatilis_contig10036:7651..78341691135147.7729955-CDS-H-fluviatilis_contig10036:7651..7834Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10036 7652..7834 +
1622929003.4777954-CDS-H-fluviatilis_contig10036:7911..79621622929003.4777954-CDS-H-fluviatilis_contig10036:7911..7962Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10036 7912..7962 +
1691135147.792446-CDS-H-fluviatilis_contig10036:7911..79621691135147.792446-CDS-H-fluviatilis_contig10036:7911..7962Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10036 7912..7962 +
1622929003.4914238-CDS-H-fluviatilis_contig10036:7990..81761622929003.4914238-CDS-H-fluviatilis_contig10036:7990..8176Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10036 7991..8176 +
1691135147.8057659-CDS-H-fluviatilis_contig10036:7990..81761691135147.8057659-CDS-H-fluviatilis_contig10036:7990..8176Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10036 7991..8176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10036.132.1

>prot_H-fluviatilis_contig10036.132.1 ID=prot_H-fluviatilis_contig10036.132.1|Name=mRNA_H-fluviatilis_contig10036.132.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=140bp
LRRLVQDCISKSMYSSAAFFADKLVTLSQADIRDVYLLARTHYLSKQYRR
AVRQPRVTRCQLADFDKLQFQYLAALCLVECREWEECLTVLGDGGMDTEM
RSFPQSEQKPPFSHSHIPEGDEFEEDEKRKEIKTPAAATD
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mRNA from alignment at H-fluviatilis_contig10036:7652..8178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10036.132.1 ID=mRNA_H-fluviatilis_contig10036.132.1|Name=mRNA_H-fluviatilis_contig10036.132.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=527bp|location=Sequence derived from alignment at H-fluviatilis_contig10036:7652..8178+ (Heribaudiella fluviatilis SAG_13_90)
CTGCGTAGACTTGTTCAAGACTGTATTTCCAAGTCGATGTACTCCAGTGC
TGCGTTTTTCGCAGACAAACTGGTTACACTGTCGCAAGCAGACATCAGAG
ATGTGTACTTGCTTGCACGAACGCACTACTTGAGCAAGCAATACCGTCGC
GCGGTGCGTCAACCACGTGTCACTCGTTGTCAGGTGAACCTATTGAAGAA
ACTGGAACTGTACCCAGGTAGGTCATGTCGGGTAAACTTGCAGGCGACTT
CGACCTAAAGTTGGCCGACTTCGACAAACTGCAATTTCAGTATCTGGCTG
CACTGTGTTTGGTAGAGGCGGATTTGAGGACGTTTTCAGGTGGAGTGCCG
AGAATGGGAGGAGTGCCTAACAGTGCTAGGAGACGGTGGCATGGACACAG
AGATGCGATCGTTCCCCCAGAGCGAGCAGAAACCGCCTTTCTCTCACAGC
CACATTCCAGAGGGAGACGAGTTTGAGGAAGACGAGAAGCGCAAGGAGAT
TAAAACCCCAGCAGCAGCGACAGACAC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10036:7652..8178+

>mRNA_H-fluviatilis_contig10036.132.1 ID=mRNA_H-fluviatilis_contig10036.132.1|Name=mRNA_H-fluviatilis_contig10036.132.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=840bp|location=Sequence derived from alignment at H-fluviatilis_contig10036:7652..8178+ (Heribaudiella fluviatilis SAG_13_90)
CTGCGTAGACTTGTTCAAGACTGTATTTCCAAGTCGATGTACTCCAGTGC
TGCGTTTTTCGCAGACAAACTGGTTACACTGTCGCAAGCAGACATCAGAG
ATGTGTACTTGCTTGCACGAACGCACTACTTGAGCAAGCAATACCGTCGC
GCGGTGCGTCAACCACGTGTCACTCGTTGTCAGCTGCGTAGACTTGTTCA
AGACTGTATTTCCAAGTCGATGTACTCCAGTGCTGCGTTTTTCGCAGACA
AACTGGTTACACTGTCGCAAGCAGACATCAGAGATGTGTACTTGCTTGCA
CGAACGCACTACTTGAGCAAGCAATACCGTCGCGCGGTGCGTCAACCACG
TGTCACTCGTTGTCAGTTGGCCGACTTCGACAAACTGCAATTTCAGTATC
TGGCTGCACTGTGTTTGTTGGCCGACTTCGACAAACTGCAATTTCAGTAT
CTGGCTGCACTGTGTTTGGTGGAGTGCCGAGAATGGGAGGAGTGCCTAAC
AGTGCTAGGAGACGGTGGCATGGACACAGAGATGCGATCGTTCCCCCAGA
GCGAGCAGAAACCGCCTTTCTCTCACAGCCACATTCCAGAGGGAGACGAG
TTTGAGGAAGACGAGAAGCGCAAGGAGATTAAAACCCCAGCAGCAGCGAC
AGACGTGGAGTGCCGAGAATGGGAGGAGTGCCTAACAGTGCTAGGAGACG
GTGGCATGGACACAGAGATGCGATCGTTCCCCCAGAGCGAGCAGAAACCG
CCTTTCTCTCACAGCCACATTCCAGAGGGAGACGAGTTTGAGGAAGACGA
GAAGCGCAAGGAGATTAAAACCCCAGCAGCAGCGACAGAC
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