mRNA_H-fluviatilis_contig100352.128.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100352.128.1
Unique NamemRNA_H-fluviatilis_contig100352.128.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Match: D2VJL6_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VJL6_NAEGR)

HSP 1 Score: 140 bits (353), Expect = 1.150e-35
Identity = 70/166 (42.17%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    1 RSDNRGVAVFQLLPNAVLQRETSTFKLLDVGCSEGSITALLGEAFSIKPENTHGCDVRDVPTS-----------KDPAKLPYDDKMSHCRLSCNFRFDVVTCLMTLHHVEDLTHMLTEIHRVLNPGGVLVFREHDCNRDGFSVLLDVQHGFYARVWSDPVEMPTFC 465
            R++NR   + ++LP+    R      +LD+GCSEGSITA++G    +  EN HGCDVRD+  S           +D  KLPY+             F +V  LM+LHH++++   + EIHRVL PGGV + REHDC     S++LD+ HG Y+ VWS P EMP FC
Sbjct:  939 RANNRSSKIKEILPSNAKIRN-----MLDIGCSEGSITAVVGTELGLSKENIHGCDVRDIGKSYTTGFTFTLISEDNNKLPYESNS----------FSLVVALMSLHHIKNVEETIKEIHRVLEPGGVFIIREHDCTPTEISLVLDIMHGLYSMVWSSPREMPNFC 1089          
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Match: UPI001CFD126C (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD126C)

HSP 1 Score: 134 bits (337), Expect = 1.450e-35
Identity = 65/157 (41.40%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    1 RSDNRGVAVFQLLPNAVLQRETSTFKLLDVGCSEGSITALLGEAFSIKPENTHGCDVRDVPTS--KDPAKLPYDDKMSHCRLSCNFRFDVVTCLMTLHHVEDLTHMLTEIHRVLNPGGVLVFREHDCNRDGFSVLLDVQHGFYARVWSDPVEMPTFC 465
            RS NR   + +L+P ++  R      +LD+GCSEGSIT  +G    +  EN HGCDVRD+  +   D       ++ +H     N  F +VT LM+ HH++++   + E++R+L PGGVL+ REHDC+    S+ LD+ HG Y+ VWS P EMP FC
Sbjct:   69 RSSNRSSKIKELIPKSLKVRN-----MLDIGCSEGSITQAIGHELGLTKENIHGCDVRDIGKTYTNDFTFHLISEQSNHLPFENN-SFSLVTALMSFHHIKNVQETIKEVYRILEPGGVLIIREHDCSPPEVSLTLDIMHGLYSLVWSSPREMPNFC 219          
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Match: A0A6A5BAK3_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BAK3_NAEFO)

HSP 1 Score: 131 bits (330), Expect = 1.070e-32
Identity = 63/156 (40.38%), Postives = 92/156 (58.97%), Query Frame = 1
Query:    1 RSDNRGVAVFQLLPNAVLQRETSTFKLLDVGCSEGSITALLGEAFSIKPENTHGCDVRDV-PTSKDPAKLPYDDKMSHCRLSCNFRFDVVTCLMTLHHVEDLTHMLTEIHRVLNPGGVLVFREHDCNRDGFSVLLDVQHGFYARVWSDPVEMPTFC 465
            R+ NR   + +L+P ++  R      +LD+GCSEGSIT  +G    +  EN HGCDVRD+  T  +        + S+     N  F +VT LM+ HH++++   + E++R+L PGG L+ REHDC+    S+ LD+ HG Y+ VWS P EMP FC
Sbjct:  430 RTSNRSNKIKELIPKSLKVRN-----MLDIGCSEGSITQAVGHELGLTKENIHGCDVRDIGKTYTNDFTFHLISEQSNHLPFANNSFSLVTALMSFHHIKNVEETIKEVYRILEPGGALIIREHDCSPPETSLTLDIMHGLYSLVWSSPREMPNFC 580          
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Match: A0A6A5BGC1_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BGC1_NAEFO)

HSP 1 Score: 114 bits (286), Expect = 1.310e-29
Identity = 57/155 (36.77%), Postives = 84/155 (54.19%), Query Frame = 1
Query:    1 RSDNRGVAVFQLLPNAVLQRETSTFKLLDVGCSEGSITALLGEAFSIKPENTHGCDVRDVPTSKDPAKLPYDDKMSHCRLSCNFRFDVVTCLMTLHHVEDLTHMLTEIHRVLNPGGVLVFREHDCNRDGFSVLLDVQHGFYARVWSDPVEMPTFC 465
            R+ NR   + +L+P ++  R      +LD+GCSEGSIT  +G    +  EN HG +   +  S                   N  F +VT LM+ HH++++   + E++R+L PGG L+ REHDC+    S+ LD+ HG Y+ VWS P EMP FC
Sbjct:   12 RTSNRSNKIKELIPKSLKVRN-----MLDIGCSEGSITQAVGHELGLTKENIHGLNNPIIYLS-------------------NNSFSLVTALMSFHHIKNVEETIKEVYRILEPGGALIIREHDCSPPETSLTLDIMHGLYSLVWSSPREMPNFC 142          
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Match: A0A7S1TQS3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQS3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.740e-26
Identity = 59/150 (39.33%), Postives = 84/150 (56.00%), Query Frame = 1
Query:   49 VLQRETSTFKLLDVGCSEGSITALLGEAFSIKPENTHGCDVRDVPTSK---------DPAKLPYDDKMSHCRLSCNFRFDVVTCLMTLHHVEDLTHMLTEIHRVLNPGGVLVFREHDC---NRDGFSVLLDVQHGFYARVWSDPVEMPTF 462
            ++ +  S   +LD+GC+EGSITA +G A  + PE+ HG D+RDV  ++         D A LP++              D V  LMTLHH+++ + +L+E HR+ +  G L+ REHDC   + D  +V LDV HG YA   SDP E P F
Sbjct:  365 IIPKGFSVGSMLDIGCAEGSITAAIGSALHLSPEDVHGVDIRDVGNAEAEGFTFHVYDGATLPFESGS----------IDFVVALMTLHHIQEPSRVLSEAHRICSDNGYLIIREHDCATAHGDDATVALDVVHGLYALAMSDPPEWPGF 504          
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Match: A0A7S1KTH7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KTH7_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 1.440e-21
Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 1
Query:    1 RSDNRGVAVFQLLPNAVLQRETSTFKLLDVGCSEGSITALLGEAFSIKPENTHGCDVRDVPTSKDPAKLPY-----DDKMSHCRLSCNFRFDVVTCLMTLHHVEDLTHMLTEIHRVLNPGGVLVFREHDCNRDGFSVLLDVQHGFYARVWSDPVEMPTFC 465
            R ++R   +  +LPN   + E +    LDVGC++GSITA L +  S       G DVRDV T +   K  +     +D      L  N   D+V C+M+LHH++++   L E+ RV+  G  LV REHDC +D   + LDV HG Y  V+++P+E   FC
Sbjct:  223 RFNSRVQDILSVLPNRNYEPEIA----LDVGCADGSITASLRDQIS-SVGRVVGVDVRDVRTERTTDKFEFVLLDENDTFKVESLE-NESVDLVVCMMSLHHIKNIDATLDELRRVMKKGAFLVIREHDCFKDEARLFLDVVHGMYGLVFTEPMEDENFC 376          
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Match: A0A3G5AHP3_9VIRU (Methyltransf_11 domain-containing protein n=1 Tax=Sylvanvirus sp. TaxID=2487774 RepID=A0A3G5AHP3_9VIRU)

HSP 1 Score: 92.0 bits (227), Expect = 6.710e-19
Identity = 52/155 (33.55%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   82 LDVGCSEGSITALLGEAFSIKPENTHGCDVRDVP-----------------------------------TSKDPAK-LPYDDKMSHCRLSCNFRFDVVTCLMTLHHVEDLTHMLTEIHRVLNPGGVLVFREHDCNRDGFSVLLDVQHGFYARVWS 438
            LD+GC +G+IT  + + + I P++ HGCD+ DV                                    TSK+  K LPY+ +           FDVV  LM+ HH++++   + +++RVL P GVL+ REHD      SV+LDV HG Y RVW+
Sbjct:  199 LDIGCGDGTITKAIAQLYHIPPQHAHGCDIYDVQKVDVTPSQELKEXXXXXXXXQLKETSITFTLLQDTTSKNGEKVLPYESES----------FDVVFALMSFHHMKNVEATIQDLYRVLRPHGVLILREHDLYLPNLSVVLDVVHGLYDRVWN 343          
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Match: A0A816D376_9BILA (Hypothetical protein n=7 Tax=Rotaria TaxID=231623 RepID=A0A816D376_9BILA)

HSP 1 Score: 82.0 bits (201), Expect = 1.560e-15
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:   31 QLLPNAVLQRETSTFKLLDVGCSEGSITALLGEAFSIKPENTHGCDVRDVPTSKDPAKLPYDDKMSHCRLSCNFRFDVVTCLMTLHHVEDLTHMLTEIHRVLNPGGVLVFREHDCNRDGFSVLLDVQH 414
            +L  N ++ +E S     D+GC  G ITA +G  F+IK EN +G DV +   ++    +  D   S   LS +    ++TCL+TLHH+E++ +ML E+ R++ P G L+ REHDC  +  SVL    H
Sbjct:  139 KLYNNELINKE-SIDSYFDLGCGNGLITARIGNHFNIKKENIYGGDVFNS-NNEQITHVSIDQNQSIIDLS-DQSVSLITCLVTLHHIENIDNMLNELARIIKPNGYLLIREHDCKLER-SVLTKYLH 262          
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Match: X6P150_RETFI (Methyltransf_11 domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6P150_RETFI)

HSP 1 Score: 80.1 bits (196), Expect = 1.080e-14
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = 1
Query:   43 NAVLQRETSTFKLLDVGCSEGSITALLGEAFSI--KPENTHGCDVRDVPTS------KDPAKLPYDDKMSHCRLSCNFRFDVVTCLMTLHHVED---LTHMLTEIHRVLNPGGVLVFREHDCNRDGFSVLLDVQHGFYARVWSDPVEMPTF 462
            N +   +TS  K+LDVGC  G I A++G+   +  K E   G DV             +   + YD   ++     +  FD +  L TLHH+E+   L  +  EI RVL P G ++ REHDCN      L++++H  Y++V ++ V++  +
Sbjct:  210 NCLFGEDTSEIKILDVGCGNGDILAMMGDLLKVQNKKEQLFGVDVDSFHGECVHRFENEITFVKYDG--TNLTAFADNTFDFIIALQTLHHIENSQQLKVLTQEISRVLKPRGYILVREHDCNTLSMKYLINLEHHLYSQVLAEHVDVKAY 358          
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Match: A0A816D485_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A816D485_ADIRI)

HSP 1 Score: 78.2 bits (191), Expect = 3.840e-14
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   28 FQLLPNAVLQRETSTFKL-LDVGCSEGSITALLGEAFSIKPENTHGCDVRDVPTSKDPAK-LPYDDKMSHCRLSCNFRFDVVTCLMTLHHVEDLTHMLTEIHRVLNPGGVLVFREHDCNRD 384
            F+ LP  + + + +  K   D+GC+ G ITA LG    +K EN  G DV   P   D    +P  +      L  + R D+VTCL+TLHH+  +  +L E+ R++ PGG L+ REHDC  +
Sbjct:  124 FKTLPFDLNKIDKNQIKAYFDLGCNTGVITAALGAYLGLKKENIFGGDV--YPVENDHVTFIPMHESEGIINLPDD-RVDLVTCLVTLHHITHIDSILVELARIIRPGGYLILREHDCRME 241          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100352.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D2VJL6_NAEGR1.150e-3542.17Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
UPI001CFD126C1.450e-3541.40uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BAK3_NAEFO1.070e-3240.38Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A6A5BGC1_NAEFO1.310e-2936.77Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A7S1TQS3_9STRA4.740e-2639.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1KTH7_9EUKA1.440e-2137.50Hypothetical protein (Fragment) n=1 Tax=Percolomon... [more]
A0A3G5AHP3_9VIRU6.710e-1933.55Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A816D376_9BILA1.560e-1537.50Hypothetical protein n=7 Tax=Rotaria TaxID=231623 ... [more]
X6P150_RETFI1.080e-1431.13Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A816D485_ADIRI3.840e-1437.19Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100352contigH-fluviatilis_contig100352:214..856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue7.4e-32
Seed eggNOG ortholog5762.XP_002675799.1
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E9BM@1,2SFQC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size465
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100352.128.1prot_H-fluviatilis_contig100352.128.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100352 214..856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.9982464-CDS-H-fluviatilis_contig100352:213..3361622929002.9982464-CDS-H-fluviatilis_contig100352:213..336Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100352 214..336 +
1691135147.49861-CDS-H-fluviatilis_contig100352:213..3361691135147.49861-CDS-H-fluviatilis_contig100352:213..336Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100352 214..336 +
1622929003.011536-CDS-H-fluviatilis_contig100352:381..4501622929003.011536-CDS-H-fluviatilis_contig100352:381..450Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100352 382..450 +
1691135147.5073104-CDS-H-fluviatilis_contig100352:381..4501691135147.5073104-CDS-H-fluviatilis_contig100352:381..450Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100352 382..450 +
1622929003.027797-CDS-H-fluviatilis_contig100352:507..6611622929003.027797-CDS-H-fluviatilis_contig100352:507..661Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100352 508..661 +
1691135147.517251-CDS-H-fluviatilis_contig100352:507..6611691135147.517251-CDS-H-fluviatilis_contig100352:507..661Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100352 508..661 +
1622929003.0466592-CDS-H-fluviatilis_contig100352:737..8561622929003.0466592-CDS-H-fluviatilis_contig100352:737..856Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100352 738..856 +
1691135147.5248618-CDS-H-fluviatilis_contig100352:737..8561691135147.5248618-CDS-H-fluviatilis_contig100352:737..856Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100352 738..856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100352.128.1

>prot_H-fluviatilis_contig100352.128.1 ID=prot_H-fluviatilis_contig100352.128.1|Name=mRNA_H-fluviatilis_contig100352.128.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=155bp
RSDNRGVAVFQLLPNAVLQRETSTFKLLDVGCSEGSITALLGEAFSIKPE
NTHGCDVRDVPTSKDPAKLPYDDKMSHCRLSCNFRFDVVTCLMTLHHVED
LTHMLTEIHRVLNPGGVLVFREHDCNRDGFSVLLDVQHGFYARVWSDPVE
MPTFC
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mRNA from alignment at H-fluviatilis_contig100352:214..856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100352.128.1 ID=mRNA_H-fluviatilis_contig100352.128.1|Name=mRNA_H-fluviatilis_contig100352.128.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=643bp|location=Sequence derived from alignment at H-fluviatilis_contig100352:214..856+ (Heribaudiella fluviatilis SAG_13_90)
CGGAGCGATAATCGGGGTGTGGCGGTGTTCCAGTTGTTGCCAAATGCGGT GCTGCAACGGGAAACCAGCACATTCAAACTGTTGGATGTGGGTTGCTCCG AAGGGTCCATCACAGCGCTTCTGGTGGGCTGTGGAGCGCGTGTAACAGCA GCTGTGTTGCTCAAACAGGGTGAAGCCTTCTCGATCAAGCCGGAAAATAC ACATGGGTGTGACGTGCGTGATGTGCCGACCAGCAAGGTCCTCTATTGTT TGCGGCACTGTTCCTTGTAGGGTTTTGTGTTTACCCATCTGAAGGATCCT GCAAAACTGCCGTACGACGACAAAATGTCTCATTGTCGGCTCTCATGTAA TTTCAGGTTTGACGTGGTTACCTGTTTAATGACGTTGCACCACGTGGAGG ATTTGACGCACATGCTCACCGAGATTCACCGTGTCCTGAATCCCGGAGGT CTCGACATGTCCGTTCTTTGACAATATCTTTTGACGGCTTACCTTACACA CTTTTTCGCCATAACTGGACTTAGGCGTGTTGGTGTTTCGTGAGCACGAT TGCAATCGAGACGGATTCAGTGTGCTTCTGGACGTGCAACATGGCTTCTA TGCGCGTGTGTGGAGCGATCCCGTGGAAATGCCGACATTCTGC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100352:214..856+

>mRNA_H-fluviatilis_contig100352.128.1 ID=mRNA_H-fluviatilis_contig100352.128.1|Name=mRNA_H-fluviatilis_contig100352.128.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=930bp|location=Sequence derived from alignment at H-fluviatilis_contig100352:214..856+ (Heribaudiella fluviatilis SAG_13_90)
CGGAGCGATAATCGGGGTGTGGCGGTGTTCCAGTTGTTGCCAAATGCGGT
GCTGCAACGGGAAACCAGCACATTCAAACTGTTGGATGTGGGTTGCTCCG
AAGGGTCCATCACAGCGCTTCTGCGGAGCGATAATCGGGGTGTGGCGGTG
TTCCAGTTGTTGCCAAATGCGGTGCTGCAACGGGAAACCAGCACATTCAA
ACTGTTGGATGTGGGTTGCTCCGAAGGGTCCATCACAGCGCTTCTGGGTG
AAGCCTTCTCGATCAAGCCGGAAAATACACATGGGTGTGACGTGCGTGAT
GTGCCGACCAGCAAGGGTGAAGCCTTCTCGATCAAGCCGGAAAATACACA
TGGGTGTGACGTGCGTGATGTGCCGACCAGCAAGGATCCTGCAAAACTGC
CGTACGACGACAAAATGTCTCATTGTCGGCTCTCATGTAATTTCAGGTTT
GACGTGGTTACCTGTTTAATGACGTTGCACCACGTGGAGGATTTGACGCA
CATGCTCACCGAGATTCACCGTGTCCTGAATCCCGGAGGATCCTGCAAAA
CTGCCGTACGACGACAAAATGTCTCATTGTCGGCTCTCATGTAATTTCAG
GTTTGACGTGGTTACCTGTTTAATGACGTTGCACCACGTGGAGGATTTGA
CGCACATGCTCACCGAGATTCACCGTGTCCTGAATCCCGGAGGCGTGTTG
GTGTTTCGTGAGCACGATTGCAATCGAGACGGATTCAGTGTGCTTCTGGA
CGTGCAACATGGCTTCTATGCGCGTGTGTGGAGCGATCCCGTGGAAATGC
CGACATTCTGCGCGTGTTGGTGTTTCGTGAGCACGATTGCAATCGAGACG
GATTCAGTGTGCTTCTGGACGTGCAACATGGCTTCTATGCGCGTGTGTGG
AGCGATCCCGTGGAAATGCCGACATTCTGC
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