mRNA_H-fluviatilis_contig100337.125.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100337.125.1
Unique NamemRNA_H-fluviatilis_contig100337.125.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100337.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100337contigH-fluviatilis_contig100337:116..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.6704104-CDS-H-fluviatilis_contig100337:115..5171622929002.6704104-CDS-H-fluviatilis_contig100337:115..517Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100337 116..517 +
1691135147.3806512-CDS-H-fluviatilis_contig100337:115..5171691135147.3806512-CDS-H-fluviatilis_contig100337:115..517Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100337 116..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100337.125.1prot_H-fluviatilis_contig100337.125.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100337 116..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100337.125.1

>prot_H-fluviatilis_contig100337.125.1 ID=prot_H-fluviatilis_contig100337.125.1|Name=mRNA_H-fluviatilis_contig100337.125.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=134bp
IRRYFLPFALAFALALGRPLAFVLEENVDLRLIAALFLAPSRIVILLNLV
FVHPIKRATSFHVQQIRFSFLRSIVSIIPPTPYTPSPLFYVRILPLVFYP
SPVLLPLLLLPLCRLSDVVLLLLNTGFAWILRY*
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mRNA from alignment at H-fluviatilis_contig100337:116..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100337.125.1 ID=mRNA_H-fluviatilis_contig100337.125.1|Name=mRNA_H-fluviatilis_contig100337.125.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=402bp|location=Sequence derived from alignment at H-fluviatilis_contig100337:116..517+ (Heribaudiella fluviatilis SAG_13_90)
ATCCGCCGATATTTTCTTCCCTTTGCCCTTGCCTTTGCCCTTGCTCTTGG
ACGCCCACTTGCCTTCGTCCTCGAAGAGAATGTCGACCTCCGGCTTATAG
CGGCGCTTTTTCTTGCTCCTTCTCGAATTGTGATACTCTTGAACCTCGTC
TTCGTCCATCCCATCAAACGCGCCACTTCGTTTCATGTACAACAGATCCG
CTTCAGTTTCCTCCGGAGTATAGTCTCGATCATACCCCCTACTCCATATA
CCCCTTCCCCCCTCTTCTATGTCCGAATCCTCCCCCTCGTCTTCTACCCT
TCGCCTGTTCTTCTTCCGCTTCTCCTGCTTCCCCTGTGTCGGCTTTCCGA
CGTCGTCCTTCTCCTCCTCAATACCGGCTTCGCTTGGATCCTCAGGTATT
AA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100337:116..517+

>mRNA_H-fluviatilis_contig100337.125.1 ID=mRNA_H-fluviatilis_contig100337.125.1|Name=mRNA_H-fluviatilis_contig100337.125.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=804bp|location=Sequence derived from alignment at H-fluviatilis_contig100337:116..517+ (Heribaudiella fluviatilis SAG_13_90)
ATCCGCCGATATTTTCTTCCCTTTGCCCTTGCCTTTGCCCTTGCTCTTGG
ACGCCCACTTGCCTTCGTCCTCGAAGAGAATGTCGACCTCCGGCTTATAG
CGGCGCTTTTTCTTGCTCCTTCTCGAATTGTGATACTCTTGAACCTCGTC
TTCGTCCATCCCATCAAACGCGCCACTTCGTTTCATGTACAACAGATCCG
CTTCAGTTTCCTCCGGAGTATAGTCTCGATCATACCCCCTACTCCATATA
CCCCTTCCCCCCTCTTCTATGTCCGAATCCTCCCCCTCGTCTTCTACCCT
TCGCCTGTTCTTCTTCCGCTTCTCCTGCTTCCCCTGTGTCGGCTTTCCGA
CGTCGTCCTTCTCCTCCTCAATACCGGCTTCGCTTGGATCCTCAGGTATT
AAATCCGCCGATATTTTCTTCCCTTTGCCCTTGCCTTTGCCCTTGCTCTT
GGACGCCCACTTGCCTTCGTCCTCGAAGAGAATGTCGACCTCCGGCTTAT
AGCGGCGCTTTTTCTTGCTCCTTCTCGAATTGTGATACTCTTGAACCTCG
TCTTCGTCCATCCCATCAAACGCGCCACTTCGTTTCATGTACAACAGATC
CGCTTCAGTTTCCTCCGGAGTATAGTCTCGATCATACCCCCTACTCCATA
TACCCCTTCCCCCCTCTTCTATGTCCGAATCCTCCCCCTCGTCTTCTACC
CTTCGCCTGTTCTTCTTCCGCTTCTCCTGCTTCCCCTGTGTCGGCTTTCC
GACGTCGTCCTTCTCCTCCTCAATACCGGCTTCGCTTGGATCCTCAGGTA
TTAA
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