mRNA_H-fluviatilis_contig100267.112.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100267.112.1
Unique NamemRNA_H-fluviatilis_contig100267.112.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100267.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100267contigH-fluviatilis_contig100267:155..648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size425
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100267.112.1prot_H-fluviatilis_contig100267.112.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100267 155..648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929000.750983-CDS-H-fluviatilis_contig100267:154..3281622929000.750983-CDS-H-fluviatilis_contig100267:154..328Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100267 155..328 +
1691135146.1379173-CDS-H-fluviatilis_contig100267:154..3281691135146.1379173-CDS-H-fluviatilis_contig100267:154..328Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100267 155..328 +
1622929000.762548-CDS-H-fluviatilis_contig100267:363..4571622929000.762548-CDS-H-fluviatilis_contig100267:363..457Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100267 364..457 +
1691135146.150905-CDS-H-fluviatilis_contig100267:363..4571691135146.150905-CDS-H-fluviatilis_contig100267:363..457Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100267 364..457 +
1622929000.7720401-CDS-H-fluviatilis_contig100267:493..6481622929000.7720401-CDS-H-fluviatilis_contig100267:493..648Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100267 494..648 +
1691135146.1623888-CDS-H-fluviatilis_contig100267:493..6481691135146.1623888-CDS-H-fluviatilis_contig100267:493..648Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100267 494..648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100267.112.1

>prot_H-fluviatilis_contig100267.112.1 ID=prot_H-fluviatilis_contig100267.112.1|Name=mRNA_H-fluviatilis_contig100267.112.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=141bp
MAPGGVLPSFTHAPVAVRPSGTEPALSLSVANGGALPQTAGILPALLSAY
QQQLKTAQVLLGANPPMVTLPQPAMAAANNSRKRSAMESGVDGGGVKVFK
SASGAAPVSPTNGASQQSSSSALLPGAVVKSLLYSHNTFGV
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mRNA from alignment at H-fluviatilis_contig100267:155..648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100267.112.1 ID=mRNA_H-fluviatilis_contig100267.112.1|Name=mRNA_H-fluviatilis_contig100267.112.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=494bp|location=Sequence derived from alignment at H-fluviatilis_contig100267:155..648+ (Heribaudiella fluviatilis SAG_13_90)
ATGGCGCCAGGCGGTGTGCTACCGTCGTTCACACACGCCCCCGTGGCGGT
GCGACCCAGTGGCACCGAGCCTGCGCTGAGTTTGAGTGTGGCCAACGGTG
GTGCACTGCCGCAAACCGCCGGAATTCTGCCGGCGTTGCTGTCGGCGTAC
CAACAGCAACTGAAAACCGCCCAGGTCTCTTGGATACGTGACCAACGCCT
TTTGTTCAGGTGCTGCTTGGAGCCAACCCACCCATGGTTACACTACCCCA
ACCCGCCATGGCAGCGGCTAACAACAGCCGCAAGCGAAGCGCCATGGAAT
CCGGTACTTTCTGTTGTGTTTGATCCCGCGCGTGGTCAGGCGTGGACGGC
GGTGGCGTGAAAGTCTTCAAATCGGCGAGCGGTGCGGCTCCAGTCTCACC
AACCAACGGCGCGTCGCAACAGTCCTCCTCGTCCGCTCTTTTGCCTGGTG
CGGTGGTGAAAAGTCTACTGTACTCCCACAACACCTTTGGGGTG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100267:155..648+

>mRNA_H-fluviatilis_contig100267.112.1 ID=mRNA_H-fluviatilis_contig100267.112.1|Name=mRNA_H-fluviatilis_contig100267.112.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=846bp|location=Sequence derived from alignment at H-fluviatilis_contig100267:155..648+ (Heribaudiella fluviatilis SAG_13_90)
ATGGCGCCAGGCGGTGTGCTACCGTCGTTCACACACGCCCCCGTGGCGGT
GCGACCCAGTGGCACCGAGCCTGCGCTGAGTTTGAGTGTGGCCAACGGTG
GTGCACTGCCGCAAACCGCCGGAATTCTGCCGGCGTTGCTGTCGGCGTAC
CAACAGCAACTGAAAACCGCCCAGATGGCGCCAGGCGGTGTGCTACCGTC
GTTCACACACGCCCCCGTGGCGGTGCGACCCAGTGGCACCGAGCCTGCGC
TGAGTTTGAGTGTGGCCAACGGTGGTGCACTGCCGCAAACCGCCGGAATT
CTGCCGGCGTTGCTGTCGGCGTACCAACAGCAACTGAAAACCGCCCAGGT
GCTGCTTGGAGCCAACCCACCCATGGTTACACTACCCCAACCCGCCATGG
CAGCGGCTAACAACAGCCGCAAGCGAAGCGCCATGGAATCCGGTGCTGCT
TGGAGCCAACCCACCCATGGTTACACTACCCCAACCCGCCATGGCAGCGG
CTAACAACAGCCGCAAGCGAAGCGCCATGGAATCCGGCGTGGACGGCGGT
GGCGTGAAAGTCTTCAAATCGGCGAGCGGTGCGGCTCCAGTCTCACCAAC
CAACGGCGCGTCGCAACAGTCCTCCTCGTCCGCTCTTTTGCCTGGTGCGG
TGGTGAAAAGTCTACTGTACTCCCACAACACCTTTGGGGTGGCGTGGACG
GCGGTGGCGTGAAAGTCTTCAAATCGGCGAGCGGTGCGGCTCCAGTCTCA
CCAACCAACGGCGCGTCGCAACAGTCCTCCTCGTCCGCTCTTTTGCCTGG
TGCGGTGGTGAAAAGTCTACTGTACTCCCACAACACCTTTGGGGTG
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