mRNA_H-fluviatilis_contig10024.107.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 130 bits (328), Expect = 9.510e-29 Identity = 71/168 (42.26%), Postives = 100/168 (59.52%), Query Frame = 1 Query: 1 GAIEKVITRCCGFGTPSSFWRFGVLVRGEVEEE----SYAFVLEY--LDGNLVLEVYGEAGNAMSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIGDELLSET-CPICDPEAGTLGAIAVKLVRMVDVKQSRDDLFNTMQNQFKKLPAAW 483
GA+EKV+TRCCG G +FWR+GVLV G + + ++A VLEY D L +++G+ +W ALSY +S V+ MLVDFPGL S C +H D + M A GD+LL + CP C + G LGA A+ LVR VD++ RD +FN ++ +F L + +
Sbjct: 499 GAVEKVLTRCCGLGGVRTFWRYGVLVHGSLGVQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMLFVDM---ARRGGDKLLEGSRCPQCSVDTGGLGAAAIDLVRFVDIRLDRDVIFNDVKARFDDLDSQY 663
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI) HSP 1 Score: 129 bits (325), Expect = 2.620e-28 Identity = 72/168 (42.86%), Postives = 102/168 (60.71%), Query Frame = 1 Query: 1 GAIEKVITRCCGFGTPSSFWRFGVLVRGEV----EEESYAFVLEYLDGN--LVLEVYGEAGNAMSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIGDELL-SETCPICDPEAGTLGAIAVKLVRMVDVKQSRDDLFNTMQNQFKKLPAAW 483
GAIEK++TRCC GT +FWRFGVLV+G + +++A ++EY + +EVYG A WAALSY +SV Q M +FPGL AS C +HE +++ + + AT GD+LL TC +CD E G LGA A+ L+ MVD+++SR DL + + K +
Sbjct: 723 GAIEKMLTRCCRLGTLRTFWRFGVLVQGSLGGGMAAKTFALLIEYSHDTCEVDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQHE---QDMQISRTATRRGDKLLHGATCNLCDSETGGLGAAAIDLLEMVDIRRSRGDLVRAVNRRLVKAQGRY 887
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI) HSP 1 Score: 129 bits (324), Expect = 3.590e-28 Identity = 71/181 (39.23%), Postives = 101/181 (55.80%), Query Frame = 1 Query: 1 GAIEKVITRCCGFGTPSSFWRFGVLVRGEV----EEESYAFVLEY--LDGNLVLEVYGEAGNAMSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIGDELLSET-CPICDPEAGTLGAIAVKLVRMVDVKQSRDDLFNTMQNQFKKLPAAWRRKYSLKDYPNEE 522
GAIEKV+TRCCG G +FWR+GVLV G + E ++A V+EY D L+ +++G+ W A SY +S V MLVDFPGL +C +H D + +AT GD+ L + CP C + G LGA A+ L+R VD++ RD +FN ++ +F L + + D EE
Sbjct: 812 GAIEKVLTRCCGLGGVQTFWRYGVLVHGGLGVQDERRTFAVVVEYSSTDNELIAQIFGDVSTPGPWGATSYVMSAVSLMLVDFPGLGWKGYLECPQHGDGMLFV---NKATRDGDKFLEGSRCPQCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFNDLESQYSFTCPTHDRSKEE 989
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE) HSP 1 Score: 127 bits (320), Expect = 7.750e-28 Identity = 75/181 (41.44%), Postives = 104/181 (57.46%), Query Frame = 1 Query: 1 GAIEKVITRCCGFGTPSSFWRFGVLVRGEVEEE----SYAFVLEYLD-GN-LVLEVYGEAGNAMSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIGDELLSET-CPICDPEAGTLGAIAVKLVRMVDVKQSRDDLFNTMQNQFKKLPAAWRRKYSLKDYPNEE 522
GAIEKV+TRCCG G +FWR+GVLV G + + ++A VLEY GN L +++G +W ALSY +S V+ MLVDFPGL S C +H D +P A GD+LL + CP C + G LG A+ LVR+VD++ +RD +FN ++ +F L + + D EE
Sbjct: 326 GAIEKVLTRCCGLGRVRTFWRYGVLVHGGLGVQDGRSTFAVVLEYSSAGNELTAQIFGGISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDA---MPFVNMARSDGDKLLEGSRCPHCSEDTGGLGEAAIDLVRLVDIRLNRDVIFNGVKARFDDLESQYSFTLPTHDRSKEE 503
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE) HSP 1 Score: 127 bits (320), Expect = 8.680e-28 Identity = 69/168 (41.07%), Postives = 98/168 (58.33%), Query Frame = 1 Query: 1 GAIEKVITRCCGFGTPSSFWRFGVLVRGEVEEE----SYAFVLEY--LDGNLVLEVYGEAGNAMSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIGDELLSET-CPICDPEAGTLGAIAVKLVRMVDVKQSRDDLFNTMQNQFKKLPAAW 483
GA+EKV+TRCCG G +FWR+GVLV G + ++A VLEY D L +++G+ +W ALSY +S V+ ML+DFPGL S C EH D + +A GD+LL + CP C + G LGA A+ LVR VD++ RD +F ++ +F L + +
Sbjct: 360 GAVEKVLTRCCGLGVVRTFWRYGVLVHGSFGAQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEHGDAMLFV---DKARRGGDKLLEGSRCPQCSVDTGGLGAAAIDLVRFVDIRLDRDVIFKEVKARFDDLDSQY 524
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.940e-27 Identity = 68/163 (41.72%), Postives = 92/163 (56.44%), Query Frame = 1 Query: 1 GAIEKVITRCCGFGTPSSFWRFGVLVRGEVEEES----YAFVLEY--LDGNLVLEVYGEAGNAMSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIGDELLSETCPICDPEAGTLGAIAVKLVRMVDVKQSRDDLFNTMQNQFKKL 471
GAIEKV+TRCCG G +FWR+GVLV G + + +A VLEY D L +++G+ G W ALSY +S V MLVDFPGL + C +H D M + T G+ L CP C E LGA A+ L+RMVD++ R ++F+ + +F L
Sbjct: 614 GAIEKVLTRCCGLGAVQTFWRYGVLVHGGLGDLGGRGIFAVVLEYSSTDHKLNGQIFGDIGTPAPWVALSYVMSAVSLMLVDFPGLRWGGALKCPQHGDAML---MANKVTQAGETFLKRRCPRCSTETKGLGAAAIDLLRMVDIRMDRGEIFDEVMERFDAL 773
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 126 bits (316), Expect = 3.700e-27 Identity = 70/168 (41.67%), Postives = 95/168 (56.55%), Query Frame = 1 Query: 1 GAIEKVITRCCGFGTPSSFWRFGVLVRGEVEEES----YAFVLEYL--DGNLVLEVYGEAGNAMSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIGDELLSET-CPICDPEAGTLGAIAVKLVRMVDVKQSRDDLFNTMQNQFKKLPAAW 483
GAIEKV+TRCC G +FWR GVLV G V E+ +A VLEY D L +++G+ W ALSY +S V ML+DFPGL S C +H D +P+ T GD++L + C C P+ LGA A+ LVRMVD++ RD +F ++ +F L +
Sbjct: 808 GAIEKVLTRCCSLGGVQTFWRSGVLVHGGVGEQDRSGIFAVVLEYSPSDNELTAQIFGDISTPAPWVALSYVVSAVSLMLLDFPGLRSRGSLKCPQHGDA---MPLANMVTRTGDKILEGSRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFREVKARFVDLEGQY 972
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 126 bits (316), Expect = 3.770e-27 Identity = 66/167 (39.52%), Postives = 93/167 (55.69%), Query Frame = 1 Query: 1 GAIEKVITRCCGFGTPSSFWRFGVLVRGEVEEES----YAFVLEY--LDGNLVLEVYGEAGNAMSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIGDELLSETCPICDPEAGTLGAIAVKLVRMVDVKQSRDDLFNTMQNQFKKLPAAW 483
GAIEKV+TRCCG G +FWR+GVLV G + + +A V+EY D L +++G+ W ALSY +S V MLVDFPGL C +H + +P + GD+ L CP C PE LGA A+ LV +VD++ RD +F ++ +F L + +
Sbjct: 878 GAIEKVLTRCCGLGDVQTFWRYGVLVHGGLGDLDGRGIFAVVVEYSSTDNELTAQIFGDISTPAPWVALSYVMSAVSLMLVDFPGLRWKGCLKCPQHGN---EMPFANKVNRAGDKFLERKCPRCSPETRGLGAAAIDLVCLVDIRLDRDVIFREVKARFVVLESQY 1041
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.150e-26 Identity = 72/191 (37.70%), Postives = 103/191 (53.93%), Query Frame = 1 Query: 1 GAIEKVITRCCGFGTPSSFWRFGVLVRGEVEEES----YAFVLEYL--DGNLVLEVYGEAGNAMSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIGDELLSET-CPICDPEAGTLGAIAVKLVRMVDVKQSRDDLFNTMQNQFKKLPAAWRRKYSLKDYPNEEFTTPVNEDAA 552
GAIEKV+TRCC G +FWR GVLV G + +E +A VLEY D L +++G+ W ALSY +S V+ ML+DFPGL S C +H D + + T G +LL + CP C P+ LGA A+ LV MVD++ RD +F ++ +F +L + + S +E+ E+ A
Sbjct: 708 GAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSSSDNELTAQIFGDISTPAPWVALSYVISAVRLMLLDFPGLRSRGSLKCPQHGDAMLLV---NKMTQAGVKLLEPSGCPQCSPDTRGLGAAAIDLVSMVDIRLDRDVIFRDVKQRFVELESQYSFSSSAASSNDEDVLIQKMEEVA 895
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.750e-25 Identity = 73/185 (39.46%), Postives = 108/185 (58.38%), Query Frame = 1 Query: 1 GAIEKVITRCCGFGTPSSFWRFGVLVRGEV----EEESYAFVLEYLD--GNLVLEVYGEAGNAMSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIGDELLSET-CPICDPEAGTLGAIAVKLVRMVDVKQSRDDLFNTMQNQFKKLPAAWRRKYS-LKDYPNEEFTT 531
GA+EKV+TRCC G +FWRFGVLV+G + +++A ++EY + ++VYG WAALS +S V+ M FPGL AS C EH+ +++P+ AT GD+LL E C +C E G +GA A +L++MVDV Q+RD +F + +F L +R+Y L+ + EF +
Sbjct: 861 GAVEKVLTRCCSIGELRTFWRFGVLVQGNMGGVTAGKTFAMLVEYSHKGSEIDIKVYGNIATTAPWAALSLGISAVRVMCSAFPGLRWCASLKCPEHK---QDMPISNTATRPGDKLLLEHGCTLCSSETGGVGAAATELLQMVDVLQNRDKMFREVHGRFVDL----QRQYPVLRPEKSREFNS 1038 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10024.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10024.107.1 >prot_H-fluviatilis_contig10024.107.1 ID=prot_H-fluviatilis_contig10024.107.1|Name=mRNA_H-fluviatilis_contig10024.107.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=231bp MSWAALSYTLSVVQNMLVDFPGLPRTASWDCLEHEDPQRNIPMPQEATHIback to top mRNA from alignment at H-fluviatilis_contig10024:1777..5414+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig10024.107.1 ID=mRNA_H-fluviatilis_contig10024.107.1|Name=mRNA_H-fluviatilis_contig10024.107.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=3638bp|location=Sequence derived from alignment at H-fluviatilis_contig10024:1777..5414+ (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig10024:1777..5414+ >mRNA_H-fluviatilis_contig10024.107.1 ID=mRNA_H-fluviatilis_contig10024.107.1|Name=mRNA_H-fluviatilis_contig10024.107.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1386bp|location=Sequence derived from alignment at H-fluviatilis_contig10024:1777..5414+ (Heribaudiella fluviatilis SAG_13_90)back to top |