mRNA_H-fluviatilis_contig10012.82.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10012.82.1
Unique NamemRNA_H-fluviatilis_contig10012.82.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10012.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10012contigH-fluviatilis_contig10012:1707..2545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10012.82.1prot_H-fluviatilis_contig10012.82.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10012 1736..2545 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.3662531-UTR-H-fluviatilis_contig10012:1706..17351622928997.3662531-UTR-H-fluviatilis_contig10012:1706..1735Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10012 1707..1735 +
1691135144.3767867-UTR-H-fluviatilis_contig10012:1706..17351691135144.3767867-UTR-H-fluviatilis_contig10012:1706..1735Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10012 1707..1735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.3826048-CDS-H-fluviatilis_contig10012:1735..18321622928997.3826048-CDS-H-fluviatilis_contig10012:1735..1832Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10012 1736..1832 +
1691135144.392486-CDS-H-fluviatilis_contig10012:1735..18321691135144.392486-CDS-H-fluviatilis_contig10012:1735..1832Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10012 1736..1832 +
1622928997.396146-CDS-H-fluviatilis_contig10012:2369..25451622928997.396146-CDS-H-fluviatilis_contig10012:2369..2545Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10012 2370..2545 +
1691135144.402466-CDS-H-fluviatilis_contig10012:2369..25451691135144.402466-CDS-H-fluviatilis_contig10012:2369..2545Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10012 2370..2545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10012.82.1

>prot_H-fluviatilis_contig10012.82.1 ID=prot_H-fluviatilis_contig10012.82.1|Name=mRNA_H-fluviatilis_contig10012.82.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=91bp
MSALQLSVGAQQTNVLQHRKCGALNAAVSDLKGKTQSTVMDRALLVKATG
KTACLACAGCDKTAKQSVRSVGQSFRAPDRAWARISCSSTK
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mRNA from alignment at H-fluviatilis_contig10012:1707..2545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10012.82.1 ID=mRNA_H-fluviatilis_contig10012.82.1|Name=mRNA_H-fluviatilis_contig10012.82.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=839bp|location=Sequence derived from alignment at H-fluviatilis_contig10012:1707..2545+ (Heribaudiella fluviatilis SAG_13_90)
CCACCGTGCTGGCGAGGAGAGAATGGCGGATGTCAGCGCTACAGTTGAGC
GTGGGAGCTCAGCAAACAAATGTGCTCCAGCACAGGAAGTGCGGGGCGCT
TAACGCAGCAGTATCCGACTTGAAGGGTGAGATGTTGAAACGTCGGCTTC
GGAAGTAGTCAGAATACAAGACTTGCGGCCACGAAGCACAAGACAGTGCA
ATACAGTAGAGTACAGTAACGTACGATGGCTACTGCAAACACACAGCACA
TGCAGTAAAGACGAGGCTGTGCATCGTAGCAAATTATGCATTTCCTGTGG
GGTGACGGTGTTTGTCTGTCTGTGTGATTGTTTCCATCGGAAAGTGCAGA
GCCCTGGCTCAAGTGTAAACAGCTGTCGATGTGGGCCAATTGTTCGACAA
GAAAGCGTCGCCAATCGTGCAGTTTTAATGGTTCTGAAAGGCCTTCAGTG
CTTGACCGATGAGACAAGCTTGGATGACAGGTTATGAGTTTGTATAAGCT
TGTCGGTGTGTAGTCTGGAGGCCAAAGTTGCGGTGTAAATATCAAATCCA
GCAAGAGTACCGGGAGTTGAATTTTTTGGAGTTGTTTACCCGCGGATGAC
CTAACCCGCTAGCAAACGAAGCGGAACACACCACCCACTCGTGTCCTCCG
TGTGCCGTGCCAGGCAAAACACAATCGACCGTGATGGATCGAGCGCTTCT
TGTTAAGGCAACAGGCAAGACCGCCTGTCTCGCCTGTGCAGGATGCGACA
AGACGGCAAAGCAGAGTGTAAGATCTGTGGGACAGTCCTTCAGAGCACCG
GACAGGGCTTGGGCGAGAATCAGCTGCAGCAGCACGAAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10012:1707..2545+

>mRNA_H-fluviatilis_contig10012.82.1 ID=mRNA_H-fluviatilis_contig10012.82.1|Name=mRNA_H-fluviatilis_contig10012.82.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=546bp|location=Sequence derived from alignment at H-fluviatilis_contig10012:1707..2545+ (Heribaudiella fluviatilis SAG_13_90)
ATGTCAGCGCTACAGTTGAGCGTGGGAGCTCAGCAAACAAATGTGCTCCA
GCACAGGAAGTGCGGGGCGCTTAACGCAGCAGTATCCGACTTGAAGGATG
TCAGCGCTACAGTTGAGCGTGGGAGCTCAGCAAACAAATGTGCTCCAGCA
CAGGAAGTGCGGGGCGCTTAACGCAGCAGTATCCGACTTGAAGGGCAAAA
CACAATCGACCGTGATGGATCGAGCGCTTCTTGTTAAGGCAACAGGCAAG
ACCGCCTGTCTCGCCTGTGCAGGATGCGACAAGACGGCAAAGCAGAGTGT
AAGATCTGTGGGACAGTCCTTCAGAGCACCGGACAGGGCTTGGGCGAGAA
TCAGCTGCAGCAGCACGAAGGCAAAACACAATCGACCGTGATGGATCGAG
CGCTTCTTGTTAAGGCAACAGGCAAGACCGCCTGTCTCGCCTGTGCAGGA
TGCGACAAGACGGCAAAGCAGAGTGTAAGATCTGTGGGACAGTCCTTCAG
AGCACCGGACAGGGCTTGGGCGAGAATCAGCTGCAGCAGCACGAAG
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