mRNA_H-fluviatilis_contig100109.80.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100109.80.1
Unique NamemRNA_H-fluviatilis_contig100109.80.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Match: B3S5Q9_TRIAD (Poly [ADP-ribose] polymerase n=2 Tax=Trichoplax TaxID=10227 RepID=B3S5Q9_TRIAD)

HSP 1 Score: 121 bits (303), Expect = 1.210e-33
Identity = 59/85 (69.41%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:    1 QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQGKAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLK 255
            +EH IT D+SSL+A P G+DS+VARG TEPDPKKD TITIDG  VTVPQGK I   +Y++S FSQSEYLVYKESQ R+RYL+++K
Sbjct:   43 KEHSITRDNSSLIAAPKGHDSVVARGKTEPDPKKDVTITIDGKTVTVPQGKPITRSQYNNSYFSQSEYLVYKESQVRLRYLIKIK 127
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BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Match: A0A1X7VTK5_AMPQE (Poly [ADP-ribose] polymerase n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VTK5_AMPQE)

HSP 1 Score: 127 bits (319), Expect = 2.090e-32
Identity = 64/87 (73.56%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQGKAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLKFS 261
            +EH IT DDSSLV  P+G+DS+VARGHTEPDP  DTTITIDG  VTVPQGK  + +KYS SSFSQ+EYL+YKESQ RIRYLL+LKF 
Sbjct:  516 KEHSITRDDSSLVKAPAGHDSVVARGHTEPDPALDTTITIDGKTVTVPQGKPKSQQKYSTSSFSQTEYLIYKESQNRIRYLLKLKFG 602
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BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Match: A0A6P7YHK4_9AMPH (Poly [ADP-ribose] polymerase n=1 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7YHK4_9AMPH)

HSP 1 Score: 125 bits (313), Expect = 9.130e-32
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQGKAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLKF 258
            +EH IT+DD SL A P GYDS+VARG TEPDPKKD  IT+DG +V VPQGK I M KY  S FSQSEYLVYKESQCRIRYLL+L+F
Sbjct:  448 KEHHITTDDCSLCAAPEGYDSVVARGCTEPDPKKDKEITMDGKKVVVPQGKPIEMPKYKGSHFSQSEYLVYKESQCRIRYLLQLQF 533
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BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Match: UPI0015AF16A2 (protein mono-ADP-ribosyltransferase PARP3 isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AF16A2)

HSP 1 Score: 124 bits (311), Expect = 1.760e-31
Identity = 61/86 (70.93%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    1 QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQGKAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLKF 258
            +EH I  DD SLV PP GYDS+VARG  EPDP KD TIT+DG EVTVPQG AIA  +Y  S F  SEYLVYKESQCRIRYLL +KF
Sbjct:  449 KEHTIVRDDCSLVTPPEGYDSVVARGRKEPDPSKDITITVDGKEVTVPQGPAIAQPQYKESYFENSEYLVYKESQCRIRYLLEMKF 534
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BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Match: UPI001B8895BD (LOW QUALITY PROTEIN: protein mono-ADP-ribosyltransferase PARP3-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8895BD)

HSP 1 Score: 124 bits (310), Expect = 2.890e-31
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQGKAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLKFS 261
            +EH IT DD SL  PP G+DS+VA+GHTEPDP KDTT++++G  V VPQGK +   KYS SSFSQSEYLVYKESQ RIRYLL+LKF 
Sbjct:  451 KEHYITRDDPSLRQPPKGFDSVVAKGHTEPDPSKDTTLSVEGKTVIVPQGKPLPQTKYSQSSFSQSEYLVYKESQVRIRYLLKLKFG 537
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BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Match: UPI001864660B (protein mono-ADP-ribosyltransferase PARP3 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864660B)

HSP 1 Score: 121 bits (304), Expect = 1.580e-30
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQGKAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLKF 258
            +E  IT DDSSL  PP GYD +VARG  EPDP KDTTIT+DG +V VPQGKAI   +Y +S+FS SEYL+YKESQCRIRY+L LKF
Sbjct:  437 KECTITEDDSSLTKPPEGYDCVVARGRMEPDPSKDTTITLDGKKVAVPQGKAIEQPQYKNSNFSNSEYLIYKESQCRIRYVLELKF 522
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BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Match: UPI001C04F983 (protein mono-ADP-ribosyltransferase PARP3 n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C04F983)

HSP 1 Score: 118 bits (296), Expect = 2.220e-29
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQGKAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLK 255
            +EH IT+D+ SL   P+G+DS+VARG  EPDP KDT IT+DG +V VPQGKAIA  ++S SSFS SEYL+YKESQCRIRYLL LK
Sbjct:  445 KEHTITNDNPSLKKAPAGFDSVVARGQVEPDPSKDTVITLDGKKVAVPQGKAIAQPQFSGSSFSNSEYLIYKESQCRIRYLLELK 529
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BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Match: H3BCR5_LATCH (Poly [ADP-ribose] polymerase n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BCR5_LATCH)

HSP 1 Score: 118 bits (295), Expect = 2.950e-29
Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQGKAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLKF 258
            +E+ IT+DDSSL A P GY+ +VARG TEPDP KDT IT+DG +V VPQGK I   K++ S+FSQSEY++YKE+QCRIRYLL+LKF
Sbjct:  440 KEYHITTDDSSLRAAPPGYNCVVARGCTEPDPSKDTAITVDGKKVVVPQGKPIRQDKFASSNFSQSEYVIYKENQCRIRYLLQLKF 525
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BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Match: A0A8C4T003_ERPCA (Poly [ADP-ribose] polymerase n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4T003_ERPCA)

HSP 1 Score: 117 bits (294), Expect = 3.230e-29
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQGKAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLKF 258
            +E+ IT DDSSLV  P GYD +VARG TEPD  KD +I +DG +V VPQGK ++ K+YS S FSQSEY++YKESQCRIRYLL+LKF
Sbjct:  408 KEYTITKDDSSLVQAPDGYDCVVARGQTEPDASKDVSIILDGKKVMVPQGKPLSQKEYSSSRFSQSEYVIYKESQCRIRYLLQLKF 493
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BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Match: A0A2G8JVN4_STIJA (Poly [ADP-ribose] polymerase n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JVN4_STIJA)

HSP 1 Score: 118 bits (295), Expect = 3.330e-29
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQGKAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLK 255
            +EH I+ DDSSL   PSGYDSIVA+G  EPDP KDTT+TIDGNE+ VPQGK +  +++ HSSF QSEYL+YKESQ RIRYLL+ K
Sbjct:  459 KEHHISRDDSSLRIAPSGYDSIVAKGRREPDPLKDTTLTIDGNEIKVPQGKPVTQQQFMHSSFWQSEYLIYKESQNRIRYLLQFK 543
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100109.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3S5Q9_TRIAD1.210e-3369.41Poly [ADP-ribose] polymerase n=2 Tax=Trichoplax Ta... [more]
A0A1X7VTK5_AMPQE2.090e-3273.56Poly [ADP-ribose] polymerase n=1 Tax=Amphimedon qu... [more]
A0A6P7YHK4_9AMPH9.130e-3273.26Poly [ADP-ribose] polymerase n=1 Tax=Microcaecilia... [more]
UPI0015AF16A21.760e-3170.93protein mono-ADP-ribosyltransferase PARP3 isoform ... [more]
UPI001B8895BD2.890e-3168.97LOW QUALITY PROTEIN: protein mono-ADP-ribosyltrans... [more]
UPI001864660B1.580e-3068.60protein mono-ADP-ribosyltransferase PARP3 n=1 Tax=... [more]
UPI001C04F9832.220e-2968.24protein mono-ADP-ribosyltransferase PARP3 n=1 Tax=... [more]
H3BCR5_LATCH2.950e-2966.28Poly [ADP-ribose] polymerase n=1 Tax=Latimeria cha... [more]
A0A8C4T003_ERPCA3.230e-2966.28Poly [ADP-ribose] polymerase n=1 Tax=Erpetoichthys... [more]
A0A2G8JVN4_STIJA3.330e-2968.24Poly [ADP-ribose] polymerase n=2 Tax=Stichopus jap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100109contigH-fluviatilis_contig100109:241..732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score130.6
Seed ortholog evalue3.7e-28
Seed eggNOG ortholog400682.PAC_15727436
Preferred namePARP3
KEGG koko:K10798
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
GOsGO:0000723,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0003950,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006464,GO:0006471,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0015630,GO:0016043,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016886,GO:0019219,GO:0019222,GO:0019538,GO:0022616,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0032200,GO:0032886,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0035861,GO:0036211,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051103,GO:0051105,GO:0051106,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051338,GO:0051348,GO:0051493,GO:0051641,GO:0051716,GO:0051726,GO:0051972,GO:0051974,GO:0060236,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090224,GO:0090304,GO:0090734,GO:0140097,GO:1901360,GO:1901564,GO:1901576,GO:1905661,GO:1905662,GO:1990166,GO:2000112,GO:2000113,GO:2000278,GO:2000279
EggNOG free text desc.poly ADP-ribose polymerase
EggNOG OGs38E97@33154,3BJ20@33208,KOG1037@1,KOG1037@2759
EC2.4.2.30
COG Functional cat.KLO
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size264
Cds size264
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100109.80.1prot_H-fluviatilis_contig100109.80.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100109 241..732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.1452858-CDS-H-fluviatilis_contig100109:240..2921622928997.1452858-CDS-H-fluviatilis_contig100109:240..292Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100109 241..292 +
1691135144.2019548-CDS-H-fluviatilis_contig100109:240..2921691135144.2019548-CDS-H-fluviatilis_contig100109:240..292Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100109 241..292 +
1622928997.1621096-CDS-H-fluviatilis_contig100109:423..4701622928997.1621096-CDS-H-fluviatilis_contig100109:423..470Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100109 424..470 +
1691135144.214759-CDS-H-fluviatilis_contig100109:423..4701691135144.214759-CDS-H-fluviatilis_contig100109:423..470Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100109 424..470 +
1622928997.175303-CDS-H-fluviatilis_contig100109:521..6391622928997.175303-CDS-H-fluviatilis_contig100109:521..639Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100109 522..639 +
1691135144.226895-CDS-H-fluviatilis_contig100109:521..6391691135144.226895-CDS-H-fluviatilis_contig100109:521..639Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100109 522..639 +
1622928997.1898177-CDS-H-fluviatilis_contig100109:685..7321622928997.1898177-CDS-H-fluviatilis_contig100109:685..732Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100109 686..732 +
1691135144.2354586-CDS-H-fluviatilis_contig100109:685..7321691135144.2354586-CDS-H-fluviatilis_contig100109:685..732Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100109 686..732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100109.80.1

>prot_H-fluviatilis_contig100109.80.1 ID=prot_H-fluviatilis_contig100109.80.1|Name=mRNA_H-fluviatilis_contig100109.80.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=88bp
QEHEITSDDSSLVAPPSGYDSIVARGHTEPDPKKDTTITIDGNEVTVPQG
KAIAMKKYSHSSFSQSEYLVYKESQCRIRYLLRLKFS*
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mRNA from alignment at H-fluviatilis_contig100109:241..732+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100109.80.1 ID=mRNA_H-fluviatilis_contig100109.80.1|Name=mRNA_H-fluviatilis_contig100109.80.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=492bp|location=Sequence derived from alignment at H-fluviatilis_contig100109:241..732+ (Heribaudiella fluviatilis SAG_13_90)
CAGGAGCACGAAATTACCTCCGACGACTCTTCTCTGGTGGCGCCGCCTTC
GGGTAGGTATGAGAGAAATGTGTGGTGTGGGTGGCATTATTCGCCTGACG
ACCGAGAGACACATGCGTCCCTCCTTCCTTCCTTTCCTCCTTCCTTCTGC
CTCCCCTCCTTCCTCCTTCCTCCTTCCTTCCAGGCTACGATTCGATTGTG
GCTCGCGGACACACTGAGCCTGATCCAAAGGTAGTCGATCCAACAAAGCC
AGCGTTGCGCTAATGTTATTTCCCCCTGTAGAAAGACACCACGATCACCA
TCGATGGCAATGAAGTGACAGTGCCGCAAGGCAAAGCCATCGCCATGAAG
AAGTACAGTCACTCCAGCTTCTCTCAGTCCGAGTATTTGGTCTACAAAGG
TACGAACTTGCTGTTCTGCTTATCCAAGTGTTTGTGTGTTTGTAGAGTCT
CAATGCCGCATCCGCTATCTGCTGCGTTTGAAGTTCTCCTAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100109:241..732+

>mRNA_H-fluviatilis_contig100109.80.1 ID=mRNA_H-fluviatilis_contig100109.80.1|Name=mRNA_H-fluviatilis_contig100109.80.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=528bp|location=Sequence derived from alignment at H-fluviatilis_contig100109:241..732+ (Heribaudiella fluviatilis SAG_13_90)
CAGGAGCACGAAATTACCTCCGACGACTCTTCTCTGGTGGCGCCGCCTTC
GGCAGGAGCACGAAATTACCTCCGACGACTCTTCTCTGGTGGCGCCGCCT
TCGGGCTACGATTCGATTGTGGCTCGCGGACACACTGAGCCTGATCCAAA
GGCTACGATTCGATTGTGGCTCGCGGACACACTGAGCCTGATCCAAAGAA
AGACACCACGATCACCATCGATGGCAATGAAGTGACAGTGCCGCAAGGCA
AAGCCATCGCCATGAAGAAGTACAGTCACTCCAGCTTCTCTCAGTCCGAG
TATTTGGTCTACAAAGAAAGACACCACGATCACCATCGATGGCAATGAAG
TGACAGTGCCGCAAGGCAAAGCCATCGCCATGAAGAAGTACAGTCACTCC
AGCTTCTCTCAGTCCGAGTATTTGGTCTACAAAGAGTCTCAATGCCGCAT
CCGCTATCTGCTGCGTTTGAAGTTCTCCTAGAGTCTCAATGCCGCATCCG
CTATCTGCTGCGTTTGAAGTTCTCCTAG
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