Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1787 |
| Cds size | 1632 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928996.7869763-CDS-H-fluviatilis_contig10007:2493..2967 | 1622928996.7869763-CDS-H-fluviatilis_contig10007:2493..2967 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10007 2494..2967 - |
| 1691135144.00809-CDS-H-fluviatilis_contig10007:2493..2967 | 1691135144.00809-CDS-H-fluviatilis_contig10007:2493..2967 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10007 2494..2967 - |
| 1622928996.8074193-CDS-H-fluviatilis_contig10007:3292..4087 | 1622928996.8074193-CDS-H-fluviatilis_contig10007:3292..4087 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10007 3293..4087 - |
| 1691135144.0160744-CDS-H-fluviatilis_contig10007:3292..4087 | 1691135144.0160744-CDS-H-fluviatilis_contig10007:3292..4087 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10007 3293..4087 - |
| 1622928996.82501-CDS-H-fluviatilis_contig10007:4821..5022 | 1622928996.82501-CDS-H-fluviatilis_contig10007:4821..5022 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10007 4822..5022 - |
| 1691135144.0275662-CDS-H-fluviatilis_contig10007:4821..5022 | 1691135144.0275662-CDS-H-fluviatilis_contig10007:4821..5022 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10007 4822..5022 - |
| 1622928996.8556476-CDS-H-fluviatilis_contig10007:6845..7007 | 1622928996.8556476-CDS-H-fluviatilis_contig10007:6845..7007 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10007 6846..7007 - |
| 1691135144.0504277-CDS-H-fluviatilis_contig10007:6845..7007 | 1691135144.0504277-CDS-H-fluviatilis_contig10007:6845..7007 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10007 6846..7007 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928996.8664877-UTR-H-fluviatilis_contig10007:7007..7162 | 1622928996.8664877-UTR-H-fluviatilis_contig10007:7007..7162 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10007 7008..7162 - |
| 1691135144.0750492-UTR-H-fluviatilis_contig10007:7007..7162 | 1691135144.0750492-UTR-H-fluviatilis_contig10007:7007..7162 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10007 7008..7162 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10007.76.1 >prot_H-fluviatilis_contig10007.76.1 ID=prot_H-fluviatilis_contig10007.76.1|Name=mRNA_H-fluviatilis_contig10007.76.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=544bp
MEKRIPEEERVEPSVPSKALLPGLPTRFKLGQRVIVLGRDAEGGTIYRTA
TVSTVESLAVGEGGGSIENWRNGKGSSNRSAAATRTTLKVRFWGAGKDMP
DEVVDERDVFERTEECLRLKKEYDVRSRRKLYARASAVRSSAAIDAFHSP
PPTAARRADQSGMSPPPAPGPYSLVSSTSPGTSFPPPLGLGLGGPIAGNR
YGKKRKLWYMETSPSPGSQGMAASNHGDADGDDAANMARAGVGSPSSAGP
AARVTGWAARGGGESAASGVCMAAAAVSSLPGTPRVREEGRTRPKHDTSA
PKKDKRSLNPSTGDTERQAGTGAMEGRHPPYADMAVEAVQALGQSRGSSL
SAVAIWIRNSRYGALLVNAGASAKEFKATVSVGVKQALVQGKLVKNRTNY
RVSAEHAEELARRQASSSDNDGRLDPSSFPPGQPGGGSAAGASAASTTAA
VAVEVRIDPEERPPSAAAVPQSHGVTFSPRDEHRYASNGEAIDDTFTAIN
AAEGKGDDRGRRYESEDIVHSSVGKASTGGAMDLDSGRGRGRGR back to topmRNA from alignment at H-fluviatilis_contig10007:2494..7162- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig10007.76.1 ID=mRNA_H-fluviatilis_contig10007.76.1|Name=mRNA_H-fluviatilis_contig10007.76.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=4669bp|location=Sequence derived from alignment at H-fluviatilis_contig10007:2494..7162- (Heribaudiella fluviatilis SAG_13_90)
GGGTGTAAATCCCCCGCGCGCCTGGCGCGCATCAAAGCTGACGATCAAGC
AATTACCATCATCATCAGCAGAGAAGGGGAGAGCGAGACAACGGAACGGT
TCTCCAATTGTCACCAGACAGGCGATACACGGCAACGCTGAAGTCTGTGA
TTGTCATGGAGAAGCGTATACCTGAGGAGGAACGAGTAGAGCCTAGTGTT
CCATCAAAAGCGTTGTTGCCGGGGTTGCCGACGAGGTTTAAGCTAGGGCA
GCGTGTGATAGTGCTAGGGAGAGATGCTGAAGGCGGGACGATATACCGGA
CGGCGACGGTGTCAACGGTGAGAAAAGCTGTTGAGAGTTCTGTTCTGTGC
CCGACTGTCGGCGTTAGTTTTTATCGGAACACGTCCACGAGCAAAAAAAC
GTAGATCGCAGTGCAGCAACTGGTCCGTGATTACTCAGTTCAGAAACGTT
TGCGTTTACGTTTTTTTTCACAAGTGCGTGCTTTTACTTGCACGGAAACG
GTTGCTAGCCAGATAGTGGGGCGGAAACACGCTATAGGATGTGGTGTTGA
AACTATGCTGGCGTGGTGAGGTAGACTCTATTTATTCTTTCATATAACTG
TTGCGCTCATTGAACTGTACTGTTCGTACTATAGGAGTCTACCTGAAAGG
GTAGCAAAACGTACAGTAGTTGAGCTGACATGTTTTTTCTGGTCAAGCAG
ATAAGGGCTGCTATTTTTTTTTGGACTGTGATTGGGGCGGGAACACGCTA
TAATATGTGGTGTTCAGACGGTGCTGGCTTCAGGCGAGGCAGACAATTCT
TCTTCGTAACTTCTGTTGTTCATTGCACTGCACTGTTTGTACTGTGGAAG
CCCCCCTGAAAGGCACAAATCATAGAGTAGTCGAGATGGCATGTTAATGC
AAGTTGGTTGATGACGAACATGTATCTTACATGTCACATCAACGACATAC
GGACTGGCATGACTCGGGGAAAACAACCACGAGTGTAATCAGACAGCGCT
TGGTGCGGAGTCCATGCGCTGTTGTGCCCGTGGTGTTCCACTTTTGGTTG
GAGAGAGATGTGAAATCGCGCAAGCGCTGTATGTGTTCGTTGGCGGCGTC
GGGAGTGGAACAAAAGGTGGCGCTATTTGGCAGGGGTCATTTGGGGAACA
ACAAACGACGGTGAAAAAATCCGACCAGCGCAGGTAGCCAGTACCCGTTG
GAGCGGAGGACTGCGGGCACACCCTTGTCGCATGTTCTTGAGTATTTTCA
ACGCGCTGCAGATGTAATGGTGCGTACGGCACAGATTTCGTTCTCCTTCT
TTGTAAGTTTGTCGTACGATTAATGGCGCGGCTCACTTTTTACTGATAGC
GTCCCCACGGGTTACTACATGCCGTCTTGGAGTCTTGGGGTACTTTGAAA
CATTGCTACCGTTCTCCCGCTGCTGGGCTTGAATCAAGTAGATCCTTGAG
TTTACAGCACCCATGGTTGAGCGTAACTCGCTGGAATCCCATAATTGTAC
ATCACGGAAACAATTCTTTCGCCCAGTTGACACGATTTCCATCTTTTTTC
TACGCACCTCGTTTTGCCGTTCGTGGGCCAAACCGACAGAAACACGCTCT
GCACTCTGCTCCCTCAGAGCTATACAAAAAGCGCTCAGTCACCTGCATAA
TGTCGAAGTTCGCTCACCCCACCCCCCCCGCCCCCCCCGTCTCCCCGCTG
TCGTCTCATGTGGAGCCTGACAGCCTCCGCCACACACAATCGCGATCAGC
CCAAAAAGAGCCATTTTGTTTCCGGGAAGAGCGTGTTTCGCCTGTGCTTT
TGCCTGGGATTTTTCACGCCCTGTCCTGCACTCGGCCTCTCCGTGTGACA
CCCAGCTATTACGACCGCCCGGCGATGTTGTGGACTCGATCCCCAGATTC
ACACTAAACATACCGCAAATCTGCGTATAGTGAGTGGGCACATTTGTAAT
TTTTCGAAAGCACCGGTGTGCCAACGGCAGGGTAGGAGTGCGATGGACTA
ATGTTGTCCGCGGGAGATAAACTGTCCGCGGGAGATAGACTCTTTTTCTT
TCGTCTTTTCGTGCATTTCTTCAGATGTTCACGGTGTGTGTGCTTTATCT
TTCTATTTCTCCTTTTTGGCCGCGCGGCCCTCTCTGACAGGTGGAGAGCC
TTGCCGTTGGGGAGGGTGGTGGGAGCATTGAGAATTGGCGTAATGGCAAG
GGTAGCAGCAATAGATCAGCGGCGGCAACAAGGACGACTCTGAAGGTCCG
CTTCTGGGGAGCAGGGAAAGACATGCCGGACGAGGTGGTGGATGAGCGAG
ATGTTTTCGAGAGGACCGAGGAATGCCTCAGGTTGAAGAAGGTCAGTTTG
CGGGACAAAAAGTATGCTGATGCGGATTTTGGCGGGTTGTTCCATGATAA
TTACGAGTAGAGGCTAGGTTTGTTGGAAAATGATGGAGGTCGGCTGAATT
GTCAGTTTTTTCGTTTCTGTTGCGGAAGATTTGACCGGAGAATATTACAG
GATACCGATGAGCGTTGATTTTCATTGGGGGGTCGGTTGACGTCGTGTGT
CGGTAGCTGCGACAGCACTGCTTCCGCTACTCTCAACCGCTATTTGTACT
GAGTTATCATTGGGGTATCGTATATCTGTGACCGAGCAGAACACCTCAAC
GACTGCATTCCGGACCTTGAACGGCGGGTGTCCGCGGATGGGTTAATTTC
AGTGTGAATACTGTGGTGTCAGCCGATATCGGCGGGTGCACTGTCCTTCT
TCGTTGCCAGCAGCCCTCCTTTCCACCTGTATACCTCAGGCACTGGAGCA
ATATAGGCCAAGTCGGGTGCTTTGTTATTCTGCAGTTGACGACCGCATCG
TGTCTTCCTTCTCGGCACCATGGTATACGGCGGTCTTGTACATATCTGAT
ATCGTGGTTGTCTCAGGATACCGTCAAGTCCATTGTACAAACCTGGTGTA
TGCTCGCCTCTGCTTTTACTCTGTCCGAGCTGTGCAAAAGATTCAACAAG
TGAGCCTCCGACTGTTTGCGCCTCTTCTCTCTCCATGCACGTATTGACTC
GACTTATCTCGCCACAACCTCTCAGGAGTACGATGTGCGGTCACGACGGA
AACTCTACGCACGCGCTTCCGCGGTGCGCTCGTCCGCAGCCATAGACGCT
TTCCACTCACCACCACCAACTGCCGCGCGGCGCGCTGATCAGTCGGGAAT
GTCCCCACCGCCGGCACCGGGGCCATATTCTCTCGTCTCCTCTACCTCCC
CGGGAACGAGCTTCCCCCCACCCCTAGGCTTGGGGTTAGGAGGGCCCATC
GCCGGAAACCGCTACGGCAAAAAGCGCAAGCTGTGGTATATGGAAACGTC
CCCATCGCCCGGTTCACAAGGAATGGCTGCGTCTAATCATGGTGATGCTG
ATGGAGACGATGCTGCAAATATGGCGAGAGCGGGTGTGGGCTCGCCAAGT
TCCGCAGGGCCAGCAGCGAGAGTGACGGGATGGGCGGCCCGCGGCGGGGG
GGAGTCAGCAGCATCGGGAGTCTGCATGGCAGCGGCAGCGGTGTCATCAC
TGCCAGGGACGCCTAGGGTTAGGGAAGAAGGGCGTACACGTCCGAAGCAC
GATACGAGTGCCCCGAAGAAAGACAAACGTTCCCTTAACCCAAGCACCGG
TGACACTGAACGTCAGGCGGGTACAGGTGCAATGGAAGGGAGGCATCCGC
CGTACGCCGACATGGCTGTGGAAGCGGTGCAGGCGTTAGGGCAATCGAGG
GGTTCGAGTCTTTCGGCCGTGGCGATATGGATTCGAAACAGCCGCTATGG
AGCCCTCTTGGTGAACGCTGGGGCTTCGGCGAAGGAATTCAAGGCTACTG
TTTCTGTCGGCGTGAAGCAGGCAAGCCTCGCGTGTTATGTTGGTTTTCTT
TTCTTAGAAGGCTTATTGTAAGGCGCCTGTCGCAATTGTTTCTTTTGCGC
GACAATTTATTCCTAAATTTGTGAGAACGTCCGGTTCTTGTGTTGTCTCG
GCTTATTCCTTACAAACAATCCCAATGTTGTTGAGCGCGGCGGTCACGAA
GCGAGAAGGGTGACTTGGTGAGGGGACTTTTACGGTACATTTTGTACAGG
CGGTTTGTCACCCTTCCTTGCCGCGTTTTGCACATCAGTGGTGGTTTTGC
CCCTCTCGTTGACGCTGGCTCTGTATGCTTTAAATGCTCCAACAGGCGCT
TGTCCAAGGGAAGCTGGTCAAGAACCGCACCAACTACCGAGTCTCCGCCG
AGCACGCCGAGGAGCTCGCCCGAAGGCAGGCCAGTAGTAGTGACAACGAC
GGCCGCCTAGATCCCTCCTCCTTTCCTCCAGGACAACCTGGTGGCGGTAG
CGCTGCTGGTGCTTCCGCTGCTTCTACTACTGCTGCTGTTGCTGTCGAAG
TCCGAATAGATCCCGAGGAGCGTCCACCGTCTGCGGCAGCGGTTCCTCAG
TCGCATGGCGTCACGTTTTCCCCACGCGATGAGCATCGATATGCTAGTAA
TGGGGAGGCGATCGATGATACCTTTACGGCAATAAACGCTGCCGAAGGAA
AGGGAGACGACCGAGGACGGAGATACGAGTCTGAAGATATTGTGCATAGT
AGTGTTGGCAAGGCGAGTACGGGCGGTGCAATGGACCTTGACAGCGGGCG
AGGAAGGGGGCGCGGGCGC back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig10007:2494..7162- >mRNA_H-fluviatilis_contig10007.76.1 ID=mRNA_H-fluviatilis_contig10007.76.1|Name=mRNA_H-fluviatilis_contig10007.76.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=3264bp|location=Sequence derived from alignment at H-fluviatilis_contig10007:2494..7162- (Heribaudiella fluviatilis SAG_13_90)
ATGGAGAAGCGTATACCTGAGGAGGAACGAGTAGAGCCTAGTGTTCCATC
AAAAGCGTTGTTGCCGGGGTTGCCGACGAGGTTTAAGCTAGGGCAGCGTG
TGATAGTGCTAGGGAGAGATGCTGAAGGCGGGACGATATACCGGACGGCG
ACGGTGTCAACGATGGAGAAGCGTATACCTGAGGAGGAACGAGTAGAGCC
TAGTGTTCCATCAAAAGCGTTGTTGCCGGGGTTGCCGACGAGGTTTAAGC
TAGGGCAGCGTGTGATAGTGCTAGGGAGAGATGCTGAAGGCGGGACGATA
TACCGGACGGCGACGGTGTCAACGGTGGAGAGCCTTGCCGTTGGGGAGGG
TGGTGGGAGCATTGAGAATTGGCGTAATGGCAAGGGTAGCAGCAATAGAT
CAGCGGCGGCAACAAGGACGACTCTGAAGGTCCGCTTCTGGGGAGCAGGG
AAAGACATGCCGGACGAGGTGGTGGATGAGCGAGATGTTTTCGAGAGGAC
CGAGGAATGCCTCAGGTTGAAGAAGGTGGAGAGCCTTGCCGTTGGGGAGG
GTGGTGGGAGCATTGAGAATTGGCGTAATGGCAAGGGTAGCAGCAATAGA
TCAGCGGCGGCAACAAGGACGACTCTGAAGGTCCGCTTCTGGGGAGCAGG
GAAAGACATGCCGGACGAGGTGGTGGATGAGCGAGATGTTTTCGAGAGGA
CCGAGGAATGCCTCAGGTTGAAGAAGGAGTACGATGTGCGGTCACGACGG
AAACTCTACGCACGCGCTTCCGCGGTGCGCTCGTCCGCAGCCATAGACGC
TTTCCACTCACCACCACCAACTGCCGCGCGGCGCGCTGATCAGTCGGGAA
TGTCCCCACCGCCGGCACCGGGGCCATATTCTCTCGTCTCCTCTACCTCC
CCGGGAACGAGCTTCCCCCCACCCCTAGGCTTGGGGTTAGGAGGGCCCAT
CGCCGGAAACCGCTACGGCAAAAAGCGCAAGCTGTGGTATATGGAAACGT
CCCCATCGCCCGGTTCACAAGGAATGGCTGCGTCTAATCATGGTGATGCT
GATGGAGACGATGCTGCAAATATGGCGAGAGCGGGTGTGGGCTCGCCAAG
TTCCGCAGGGCCAGCAGCGAGAGTGACGGGATGGGCGGCCCGCGGCGGGG
GGGAGTCAGCAGCATCGGGAGTCTGCATGGCAGCGGCAGCGGTGTCATCA
CTGCCAGGGACGCCTAGGGTTAGGGAAGAAGGGCGTACACGTCCGAAGCA
CGATACGAGTGCCCCGAAGAAAGACAAACGTTCCCTTAACCCAAGCACCG
GTGACACTGAACGTCAGGCGGGTACAGGTGCAATGGAAGGGAGGCATCCG
CCGTACGCCGACATGGCTGTGGAAGCGGTGCAGGCGTTAGGGCAATCGAG
GGGTTCGAGTCTTTCGGCCGTGGCGATATGGATTCGAAACAGCCGCTATG
GAGCCCTCTTGGTGAACGCTGGGGCTTCGGCGAAGGAATTCAAGGCTACT
GTTTCTGTCGGCGTGAAGCAGGAGTACGATGTGCGGTCACGACGGAAACT
CTACGCACGCGCTTCCGCGGTGCGCTCGTCCGCAGCCATAGACGCTTTCC
ACTCACCACCACCAACTGCCGCGCGGCGCGCTGATCAGTCGGGAATGTCC
CCACCGCCGGCACCGGGGCCATATTCTCTCGTCTCCTCTACCTCCCCGGG
AACGAGCTTCCCCCCACCCCTAGGCTTGGGGTTAGGAGGGCCCATCGCCG
GAAACCGCTACGGCAAAAAGCGCAAGCTGTGGTATATGGAAACGTCCCCA
TCGCCCGGTTCACAAGGAATGGCTGCGTCTAATCATGGTGATGCTGATGG
AGACGATGCTGCAAATATGGCGAGAGCGGGTGTGGGCTCGCCAAGTTCCG
CAGGGCCAGCAGCGAGAGTGACGGGATGGGCGGCCCGCGGCGGGGGGGAG
TCAGCAGCATCGGGAGTCTGCATGGCAGCGGCAGCGGTGTCATCACTGCC
AGGGACGCCTAGGGTTAGGGAAGAAGGGCGTACACGTCCGAAGCACGATA
CGAGTGCCCCGAAGAAAGACAAACGTTCCCTTAACCCAAGCACCGGTGAC
ACTGAACGTCAGGCGGGTACAGGTGCAATGGAAGGGAGGCATCCGCCGTA
CGCCGACATGGCTGTGGAAGCGGTGCAGGCGTTAGGGCAATCGAGGGGTT
CGAGTCTTTCGGCCGTGGCGATATGGATTCGAAACAGCCGCTATGGAGCC
CTCTTGGTGAACGCTGGGGCTTCGGCGAAGGAATTCAAGGCTACTGTTTC
TGTCGGCGTGAAGCAGGCGCTTGTCCAAGGGAAGCTGGTCAAGAACCGCA
CCAACTACCGAGTCTCCGCCGAGCACGCCGAGGAGCTCGCCCGAAGGCAG
GCCAGTAGTAGTGACAACGACGGCCGCCTAGATCCCTCCTCCTTTCCTCC
AGGACAACCTGGTGGCGGTAGCGCTGCTGGTGCTTCCGCTGCTTCTACTA
CTGCTGCTGTTGCTGTCGAAGTCCGAATAGATCCCGAGGAGCGTCCACCG
TCTGCGGCAGCGGTTCCTCAGTCGCATGGCGTCACGTTTTCCCCACGCGA
TGAGCATCGATATGCTAGTAATGGGGAGGCGATCGATGATACCTTTACGG
CAATAAACGCTGCCGAAGGAAAGGGAGACGACCGAGGACGGAGATACGAG
TCTGAAGATATTGTGCATAGTAGTGTTGGCAAGGCGAGTACGGGCGGTGC
AATGGACCTTGACAGCGGGCGAGGAAGGGGGCGCGGGCGCGCGCTTGTCC
AAGGGAAGCTGGTCAAGAACCGCACCAACTACCGAGTCTCCGCCGAGCAC
GCCGAGGAGCTCGCCCGAAGGCAGGCCAGTAGTAGTGACAACGACGGCCG
CCTAGATCCCTCCTCCTTTCCTCCAGGACAACCTGGTGGCGGTAGCGCTG
CTGGTGCTTCCGCTGCTTCTACTACTGCTGCTGTTGCTGTCGAAGTCCGA
ATAGATCCCGAGGAGCGTCCACCGTCTGCGGCAGCGGTTCCTCAGTCGCA
TGGCGTCACGTTTTCCCCACGCGATGAGCATCGATATGCTAGTAATGGGG
AGGCGATCGATGATACCTTTACGGCAATAAACGCTGCCGAAGGAAAGGGA
GACGACCGAGGACGGAGATACGAGTCTGAAGATATTGTGCATAGTAGTGT
TGGCAAGGCGAGTACGGGCGGTGCAATGGACCTTGACAGCGGGCGAGGAA
GGGGGCGCGGGCGC back to top
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