mRNA_H-fluviatilis_contig10007.75.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10007.75.1
Unique NamemRNA_H-fluviatilis_contig10007.75.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10007.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10007contigH-fluviatilis_contig10007:2129..2430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.901245-CDS-H-fluviatilis_contig10007:2128..24281622928996.901245-CDS-H-fluviatilis_contig10007:2128..2428Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10007 2129..2428 +
1691135144.0843592-CDS-H-fluviatilis_contig10007:2128..24281691135144.0843592-CDS-H-fluviatilis_contig10007:2128..2428Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10007 2129..2428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10007.75.1prot_H-fluviatilis_contig10007.75.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10007 2129..2428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10007.75.1

>prot_H-fluviatilis_contig10007.75.1 ID=prot_H-fluviatilis_contig10007.75.1|Name=mRNA_H-fluviatilis_contig10007.75.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=100bp
GSNGGRLSFFSFCIGVADLFTSCIGSPSGESITAAALACAASSSFIAPAK
AGETHPAKESAVLHQPALVRLCEFDSVCTGGAVTEPAFPLPGAPSLSLEL
back to top

mRNA from alignment at H-fluviatilis_contig10007:2129..2430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10007.75.1 ID=mRNA_H-fluviatilis_contig10007.75.1|Name=mRNA_H-fluviatilis_contig10007.75.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=302bp|location=Sequence derived from alignment at H-fluviatilis_contig10007:2129..2430+ (Heribaudiella fluviatilis SAG_13_90)
GGCTCCAACGGTGGTCGCCTCTCCTTTTTCAGCTTCTGCATTGGAGTCGC
CGATCTCTTCACATCTTGCATCGGCTCTCCCTCCGGAGAATCCATCACCG
CTGCTGCCTTGGCCTGCGCCGCCTCCTCCTCCTTCATCGCCCCCGCAAAA
GCGGGCGAAACGCATCCAGCAAAAGAGTCCGCAGTGCTCCACCAGCCTGC
GCTCGTCCGACTCTGTGAATTCGATTCAGTGTGCACAGGAGGTGCGGTCA
CCGAGCCCGCATTCCCCCTGCCGGGAGCGCCCTCTCTATCCCTGGAGCTC
CC
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig10007:2129..2430+

>mRNA_H-fluviatilis_contig10007.75.1 ID=mRNA_H-fluviatilis_contig10007.75.1|Name=mRNA_H-fluviatilis_contig10007.75.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=600bp|location=Sequence derived from alignment at H-fluviatilis_contig10007:2129..2430+ (Heribaudiella fluviatilis SAG_13_90)
GGCTCCAACGGTGGTCGCCTCTCCTTTTTCAGCTTCTGCATTGGAGTCGC
CGATCTCTTCACATCTTGCATCGGCTCTCCCTCCGGAGAATCCATCACCG
CTGCTGCCTTGGCCTGCGCCGCCTCCTCCTCCTTCATCGCCCCCGCAAAA
GCGGGCGAAACGCATCCAGCAAAAGAGTCCGCAGTGCTCCACCAGCCTGC
GCTCGTCCGACTCTGTGAATTCGATTCAGTGTGCACAGGAGGTGCGGTCA
CCGAGCCCGCATTCCCCCTGCCGGGAGCGCCCTCTCTATCCCTGGAGCTC
GGCTCCAACGGTGGTCGCCTCTCCTTTTTCAGCTTCTGCATTGGAGTCGC
CGATCTCTTCACATCTTGCATCGGCTCTCCCTCCGGAGAATCCATCACCG
CTGCTGCCTTGGCCTGCGCCGCCTCCTCCTCCTTCATCGCCCCCGCAAAA
GCGGGCGAAACGCATCCAGCAAAAGAGTCCGCAGTGCTCCACCAGCCTGC
GCTCGTCCGACTCTGTGAATTCGATTCAGTGTGCACAGGAGGTGCGGTCA
CCGAGCCCGCATTCCCCCTGCCGGGAGCGCCCTCTCTATCCCTGGAGCTC
back to top