Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 490 |
| Cds size | 306 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928996.4276404-UTR-H-fluviatilis_contig100034:1..135 | 1622928996.4276404-UTR-H-fluviatilis_contig100034:1..135 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig100034 2..135 + |
| 1691135143.8264384-UTR-H-fluviatilis_contig100034:1..135 | 1691135143.8264384-UTR-H-fluviatilis_contig100034:1..135 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig100034 2..135 + |
| 1622928996.4639108-UTR-H-fluviatilis_contig100034:441..491 | 1622928996.4639108-UTR-H-fluviatilis_contig100034:441..491 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig100034 442..491 + |
| 1691135143.8636794-UTR-H-fluviatilis_contig100034:441..491 | 1691135143.8636794-UTR-H-fluviatilis_contig100034:441..491 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig100034 442..491 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928996.4451957-CDS-H-fluviatilis_contig100034:135..441 | 1622928996.4451957-CDS-H-fluviatilis_contig100034:135..441 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100034 136..441 + |
| 1691135143.8377874-CDS-H-fluviatilis_contig100034:135..441 | 1691135143.8377874-CDS-H-fluviatilis_contig100034:135..441 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100034 136..441 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig100034.70.1 >prot_H-fluviatilis_contig100034.70.1 ID=prot_H-fluviatilis_contig100034.70.1|Name=mRNA_H-fluviatilis_contig100034.70.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=102bp
MVPHRPPEDEMLHGQGCRSLSLAIFYAHARNPPWLPGLYLANAERFCLRV
LPWGAQHKFAAGRSPCHNQATQHCGRLEALVASEKSRHERIIATKVVLYY
S* back to topmRNA from alignment at H-fluviatilis_contig100034:2..491+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig100034.70.1 ID=mRNA_H-fluviatilis_contig100034.70.1|Name=mRNA_H-fluviatilis_contig100034.70.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=490bp|location=Sequence derived from alignment at H-fluviatilis_contig100034:2..491+ (Heribaudiella fluviatilis SAG_13_90)
TATTTCGTGGACAAACGACTTAGAGTGTGACTAATTCAGATCTCGACCGG
AATCAATCACAACAAGTCTTTCCCACAGACGTGGTATCCTGAGTTCAAGG
AGGGCTCTCGAAGGGTGGCAGTGTTCCGTCGGCGATGGTGCCCCACCGGC
CTCCCGAAGACGAGATGCTGCATGGACAAGGATGCCGCTCCCTGTCTCTT
GCAATTTTTTACGCTCATGCAAGAAACCCTCCGTGGCTACCTGGTCTCTA
TCTAGCCAACGCCGAGCGGTTCTGCCTCCGCGTGTTGCCATGGGGTGCAC
AGCACAAATTTGCGGCTGGTCGTAGCCCCTGCCACAATCAAGCCACCCAG
CACTGTGGCAGGCTTGAGGCTTTGGTAGCGTCTGAAAAAAGCCGACACGA
GAGAATCATTGCCACAAAAGTAGTCTTGTATTATAGTTGAAGCGTCGGGA
GGATGCGCACAAGAGGAATACGCAGGTATTCTAATCCCAC back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig100034:2..491+ >mRNA_H-fluviatilis_contig100034.70.1 ID=mRNA_H-fluviatilis_contig100034.70.1|Name=mRNA_H-fluviatilis_contig100034.70.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=612bp|location=Sequence derived from alignment at H-fluviatilis_contig100034:2..491+ (Heribaudiella fluviatilis SAG_13_90)
ATGGTGCCCCACCGGCCTCCCGAAGACGAGATGCTGCATGGACAAGGATG
CCGCTCCCTGTCTCTTGCAATTTTTTACGCTCATGCAAGAAACCCTCCGT
GGCTACCTGGTCTCTATCTAGCCAACGCCGAGCGGTTCTGCCTCCGCGTG
TTGCCATGGGGTGCACAGCACAAATTTGCGGCTGGTCGTAGCCCCTGCCA
CAATCAAGCCACCCAGCACTGTGGCAGGCTTGAGGCTTTGGTAGCGTCTG
AAAAAAGCCGACACGAGAGAATCATTGCCACAAAAGTAGTCTTGTATTAT
AGTTGAATGGTGCCCCACCGGCCTCCCGAAGACGAGATGCTGCATGGACA
AGGATGCCGCTCCCTGTCTCTTGCAATTTTTTACGCTCATGCAAGAAACC
CTCCGTGGCTACCTGGTCTCTATCTAGCCAACGCCGAGCGGTTCTGCCTC
CGCGTGTTGCCATGGGGTGCACAGCACAAATTTGCGGCTGGTCGTAGCCC
CTGCCACAATCAAGCCACCCAGCACTGTGGCAGGCTTGAGGCTTTGGTAG
CGTCTGAAAAAAGCCGACACGAGAGAATCATTGCCACAAAAGTAGTCTTG
TATTATAGTTGA back to top
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