mRNA_H-fluviatilis_contig100017.64.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100017.64.1
Unique NamemRNA_H-fluviatilis_contig100017.64.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Match: A0A0G4J026_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J026_PLABS)

HSP 1 Score: 58.5 bits (140), Expect = 1.250e-8
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   22 TGKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTF 135
            TGK +MM+ H+SRDTAEKQWDETR  ALQG AR  R F
Sbjct:  933 TGKPLMMVTHHSRDTAEKQWDETRVHALQGSARVFRQF 970
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BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Match: A0A7S0DC24_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DC24_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 1.520e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   22 TGKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTFVKV 144
            TG+ V+MMVHYSRDTA KQWDETR  AL+  A  L  F+ V
Sbjct:  282 TGQKVLMMVHYSRDTARKQWDETRVLALRAAAAVLGEFMSV 322
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BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Match: A0A1Y1IF23_KLENI (ARM repeat superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IF23_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 2.090e-7
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   25 GKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTFVKVKQGQVD 162
            GKTV+M+VH+SR+TA+KQWDET    L G++R LR++ ++ +   D
Sbjct: 1190 GKTVLMLVHHSRNTAQKQWDETLVMYLSGMSRLLRSYFRLLEAMPD 1235
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BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Match: UPI0009E4193A (protein MON2 homolog isoform X1 n=12 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E4193A)

HSP 1 Score: 53.9 bits (128), Expect = 5.350e-7
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   16 TDTGKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTF 135
            T  GKTV M++H+SRDTA+KQWDET    L G+ R LR+F
Sbjct: 1067 TRRGKTVHMLIHHSRDTAQKQWDETLVLVLGGITRLLRSF 1106
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BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Match: A0A7I8JAC3_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JAC3_SPIIN)

HSP 1 Score: 53.5 bits (127), Expect = 7.320e-7
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   16 TDTGKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTFVKVKQG 153
            T  GK V+M++H+SR+TA+KQWDET    L G+ R LR+F    QG
Sbjct: 1027 TRGGKAVLMLIHHSRNTAQKQWDETLVLVLGGITRLLRSFFPFLQG 1072
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BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Match: A0A484L7E8_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L7E8_9ASTE)

HSP 1 Score: 53.1 bits (126), Expect = 9.990e-7
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   16 TDTGKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTF 135
            T  GK V M++H+SR+TA+KQWDET    L G+AR LRTF
Sbjct:  652 TRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARVLRTF 691
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BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Match: A0A328DWI7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328DWI7_9ASTE)

HSP 1 Score: 53.1 bits (126), Expect = 9.990e-7
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   16 TDTGKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTF 135
            T  GK V M++H+SR+TA+KQWDET    L G+AR LRTF
Sbjct:  642 TRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARVLRTF 681
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BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Match: A0A328E337_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328E337_9ASTE)

HSP 1 Score: 53.1 bits (126), Expect = 1.000e-6
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   16 TDTGKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTF 135
            T  GK V M++H+SR+TA+KQWDET    L G+AR LRTF
Sbjct: 1131 TRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARVLRTF 1170
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BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Match: A0A2Z7CEM4_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CEM4_9LAMI)

HSP 1 Score: 53.1 bits (126), Expect = 1.000e-6
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   16 TDTGKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTF 135
            T  GK V M++H+SR+TA+KQWDET    L G+AR LRTF
Sbjct: 1217 TRKGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARILRTF 1256
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BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Match: A0A388KWM5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KWM5_CHABU)

HSP 1 Score: 53.1 bits (126), Expect = 1.000e-6
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   25 GKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTFVKV 144
            GK V M+VH+SR+TA+KQWDET   AL G++R LR+F+ +
Sbjct: 1135 GKPVHMLVHHSRNTAQKQWDETLVVALYGMSRLLRSFLPI 1174
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100017.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4J026_PLABS1.250e-871.05Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A7S0DC24_9EUKA1.520e-763.41Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A1Y1IF23_KLENI2.090e-750.00ARM repeat superfamily protein n=1 Tax=Klebsormidi... [more]
UPI0009E4193A5.350e-760.00protein MON2 homolog isoform X1 n=12 Tax=Phalaenop... [more]
A0A7I8JAC3_SPIIN7.320e-752.17Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A484L7E8_9ASTE9.990e-760.00Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A328DWI7_9ASTE9.990e-760.00Uncharacterized protein n=1 Tax=Cuscuta australis ... [more]
A0A328E337_9ASTE1.000e-660.00Uncharacterized protein n=1 Tax=Cuscuta australis ... [more]
A0A2Z7CEM4_9LAMI1.000e-660.00Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
A0A388KWM5_CHABU1.000e-657.50Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100017contigH-fluviatilis_contig100017:226..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.8891935-CDS-H-fluviatilis_contig100017:225..3871622928995.8891935-CDS-H-fluviatilis_contig100017:225..387Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100017 226..387 +
1691135143.5597053-CDS-H-fluviatilis_contig100017:225..3871691135143.5597053-CDS-H-fluviatilis_contig100017:225..387Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100017 226..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100017.64.1prot_H-fluviatilis_contig100017.64.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100017 226..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100017.64.1

>prot_H-fluviatilis_contig100017.64.1 ID=prot_H-fluviatilis_contig100017.64.1|Name=mRNA_H-fluviatilis_contig100017.64.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=54bp
MGGGVTDTGKTVMMMVHYSRDTAEKQWDETRATALQGLARGLRTFVKVKQ
GQVD
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mRNA from alignment at H-fluviatilis_contig100017:226..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100017.64.1 ID=mRNA_H-fluviatilis_contig100017.64.1|Name=mRNA_H-fluviatilis_contig100017.64.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=162bp|location=Sequence derived from alignment at H-fluviatilis_contig100017:226..387+ (Heribaudiella fluviatilis SAG_13_90)
ATGGGTGGGGGTGTGACAGACACGGGCAAGACCGTCATGATGATGGTGCA
CTACAGCCGCGATACGGCTGAGAAGCAGTGGGACGAAACGCGCGCCACTG
CCCTGCAGGGCCTGGCACGCGGCTTGCGCACTTTTGTCAAGGTAAAGCAG
GGTCAAGTGGAC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100017:226..387+

>mRNA_H-fluviatilis_contig100017.64.1 ID=mRNA_H-fluviatilis_contig100017.64.1|Name=mRNA_H-fluviatilis_contig100017.64.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=324bp|location=Sequence derived from alignment at H-fluviatilis_contig100017:226..387+ (Heribaudiella fluviatilis SAG_13_90)
ATGGGTGGGGGTGTGACAGACACGGGCAAGACCGTCATGATGATGGTGCA
CTACAGCCGCGATACGGCTGAGAAGCAGTGGGACGAAACGCGCGCCACTG
CCCTGCAGGGCCTGGCACGCGGCTTGCGCACTTTTGTCAAGGTAAAGCAG
GGTCAAGTGGACATGGGTGGGGGTGTGACAGACACGGGCAAGACCGTCAT
GATGATGGTGCACTACAGCCGCGATACGGCTGAGAAGCAGTGGGACGAAA
CGCGCGCCACTGCCCTGCAGGGCCTGGCACGCGGCTTGCGCACTTTTGTC
AAGGTAAAGCAGGGTCAAGTGGAC
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