mRNA_H-fluviatilis_contig100000.63.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100000.63.1
Unique NamemRNA_H-fluviatilis_contig100000.63.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100000.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100000contigH-fluviatilis_contig100000:61..865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size617
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.6943426-CDS-H-fluviatilis_contig100000:60..981622928995.6943426-CDS-H-fluviatilis_contig100000:60..98Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 61..98 +
1691135143.3481631-CDS-H-fluviatilis_contig100000:60..981691135143.3481631-CDS-H-fluviatilis_contig100000:60..98Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 61..98 +
1622928995.715856-CDS-H-fluviatilis_contig100000:128..2191622928995.715856-CDS-H-fluviatilis_contig100000:128..219Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 129..219 +
1691135143.43838-CDS-H-fluviatilis_contig100000:128..2191691135143.43838-CDS-H-fluviatilis_contig100000:128..219Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 129..219 +
1622928995.7346196-CDS-H-fluviatilis_contig100000:263..4271622928995.7346196-CDS-H-fluviatilis_contig100000:263..427Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 264..427 +
1691135143.4706516-CDS-H-fluviatilis_contig100000:263..4271691135143.4706516-CDS-H-fluviatilis_contig100000:263..427Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 264..427 +
1622928995.7499175-CDS-H-fluviatilis_contig100000:454..4921622928995.7499175-CDS-H-fluviatilis_contig100000:454..492Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 455..492 +
1691135143.5110908-CDS-H-fluviatilis_contig100000:454..4921691135143.5110908-CDS-H-fluviatilis_contig100000:454..492Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 455..492 +
1622928995.7724342-CDS-H-fluviatilis_contig100000:524..6131622928995.7724342-CDS-H-fluviatilis_contig100000:524..613Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 525..613 +
1691135143.530591-CDS-H-fluviatilis_contig100000:524..6131691135143.530591-CDS-H-fluviatilis_contig100000:524..613Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 525..613 +
1622928995.7896554-CDS-H-fluviatilis_contig100000:642..8071622928995.7896554-CDS-H-fluviatilis_contig100000:642..807Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 643..807 +
1691135143.5398424-CDS-H-fluviatilis_contig100000:642..8071691135143.5398424-CDS-H-fluviatilis_contig100000:642..807Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 643..807 +
1622928995.826613-CDS-H-fluviatilis_contig100000:835..8651622928995.826613-CDS-H-fluviatilis_contig100000:835..865Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 836..865 +
1691135143.5496984-CDS-H-fluviatilis_contig100000:835..8651691135143.5496984-CDS-H-fluviatilis_contig100000:835..865Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100000 836..865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100000.63.1prot_H-fluviatilis_contig100000.63.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100000 61..865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100000.63.1

>prot_H-fluviatilis_contig100000.63.1 ID=prot_H-fluviatilis_contig100000.63.1|Name=mRNA_H-fluviatilis_contig100000.63.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=205bp
TSSSSSTQSPASRTPVRTPPWVNACLSIEQQRQQKRDKLLHVKVPTRRTE
RLAIRPHELKPRHWKETRTSAIAFNETYVIAGGTSYQVCVWLRQPPGRPS
GAFWRRTIVLAESSGWPTAVCTLPPMAFELERRPPATVTQVLSEGRVSQL
PNLVFAVGTSLGNIFIYHLRTSGDATEIECKSYFKCHTHRVLNVQGSVQH
RFATY
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mRNA from alignment at H-fluviatilis_contig100000:61..865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100000.63.1 ID=mRNA_H-fluviatilis_contig100000.63.1|Name=mRNA_H-fluviatilis_contig100000.63.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=805bp|location=Sequence derived from alignment at H-fluviatilis_contig100000:61..865+ (Heribaudiella fluviatilis SAG_13_90)
ACGTCTTCATCCTCATCTACGCAATCGCCCGCTTCACGGTACCGTTTGCG
ATCCGGTCAACTCGATAGTACCCCGGTGCGCACCCCACCGTGGGTGAATG
CCTGCCTCAGCATCGAACAGCAGCGGCAACAGAAGCGTGACAAGTTGTTG
CACGTCAAGGCAAGTCCTGGGCTGGCCAATCAGAGATGACCACCGTGTGT
CAGGTGCCAACCCGTCGTACCGAGCGTCTGGCCATCCGGCCGCATGAGCT
AAAGCCACGGCATTGGAAGGAAACTCGCACCAGTGCCATTGCATTCAATG
AGACCTATGTGATTGCTGGTGGCACTAGTTATCAAGTCTGCGTGTGGCTT
CGGCAACCCCCGGGCAGGTCTGTCGGTTGCCCACAGCCTCTCAGGCCCAG
TGGTGCATTCTGGCGTCGAACAATAGTGTTGGGTAAGTCATCGCTTTTCA
AGTATCCACCTCAGCCGAGTCAAGCGGTTGGCCAACGGCTGTGTGCACTT
TGCCTCCGATGGCGTTTGAGCTGGAACGCCGGCCACCGGCCACTGTTACG
CAAGTAGGGTGTTGAACATCAATGGGTTGAAGGTACTATCGGAAGGTCGG
GTCAGTCAACTACCAAACTTGGTGTTTGCCGTGGGGACTTCCCTGGGCAA
CATCTTCATCTACCATTTGCGCACCTCTGGTGACGCTACGGAAATTGAGT
GCAAGTCGTACTTCAAATGCCATACGCATCGCGTACTCAATGTGCAGGTG
GGTTGAATTGGTGTTCACTTGACAGGGTTCGGTTCAACATCGATTCGCAA
CATAC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100000:61..865+

>mRNA_H-fluviatilis_contig100000.63.1 ID=mRNA_H-fluviatilis_contig100000.63.1|Name=mRNA_H-fluviatilis_contig100000.63.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1230bp|location=Sequence derived from alignment at H-fluviatilis_contig100000:61..865+ (Heribaudiella fluviatilis SAG_13_90)
ACGTCTTCATCCTCATCTACGCAATCGCCCGCTTCACGACGTCTTCATCC
TCATCTACGCAATCGCCCGCTTCACGTACCCCGGTGCGCACCCCACCGTG
GGTGAATGCCTGCCTCAGCATCGAACAGCAGCGGCAACAGAAGCGTGACA
AGTTGTTGCACGTCAAGTACCCCGGTGCGCACCCCACCGTGGGTGAATGC
CTGCCTCAGCATCGAACAGCAGCGGCAACAGAAGCGTGACAAGTTGTTGC
ACGTCAAGGTGCCAACCCGTCGTACCGAGCGTCTGGCCATCCGGCCGCAT
GAGCTAAAGCCACGGCATTGGAAGGAAACTCGCACCAGTGCCATTGCATT
CAATGAGACCTATGTGATTGCTGGTGGCACTAGTTATCAAGTCTGCGTGT
GGCTTCGGCAACCCCCGGGCAGGTGCCAACCCGTCGTACCGAGCGTCTGG
CCATCCGGCCGCATGAGCTAAAGCCACGGCATTGGAAGGAAACTCGCACC
AGTGCCATTGCATTCAATGAGACCTATGTGATTGCTGGTGGCACTAGTTA
TCAAGTCTGCGTGTGGCTTCGGCAACCCCCGGGCAGGCCCAGTGGTGCAT
TCTGGCGTCGAACAATAGTGTTGGGCCCAGTGGTGCATTCTGGCGTCGAA
CAATAGTGTTGGCCGAGTCAAGCGGTTGGCCAACGGCTGTGTGCACTTTG
CCTCCGATGGCGTTTGAGCTGGAACGCCGGCCACCGGCCACTGTTACGCA
ACCGAGTCAAGCGGTTGGCCAACGGCTGTGTGCACTTTGCCTCCGATGGC
GTTTGAGCTGGAACGCCGGCCACCGGCCACTGTTACGCAAGTACTATCGG
AAGGTCGGGTCAGTCAACTACCAAACTTGGTGTTTGCCGTGGGGACTTCC
CTGGGCAACATCTTCATCTACCATTTGCGCACCTCTGGTGACGCTACGGA
AATTGAGTGCAAGTCGTACTTCAAATGCCATACGCATCGCGTACTCAATG
TGCAGGTACTATCGGAAGGTCGGGTCAGTCAACTACCAAACTTGGTGTTT
GCCGTGGGGACTTCCCTGGGCAACATCTTCATCTACCATTTGCGCACCTC
TGGTGACGCTACGGAAATTGAGTGCAAGTCGTACTTCAAATGCCATACGC
ATCGCGTACTCAATGTGCAGGGTTCGGTTCAACATCGATTCGCAACATAC
GGTTCGGTTCAACATCGATTCGCAACATAC
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