mRNA_H-canaliculatus_M_contigs9995.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9995.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9995.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9995.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.430e-47
Identity = 122/164 (74.39%), Postives = 129/164 (78.66%), Query Frame = 1 
Query:    1 SSMEGLVLVARAYGARKDWEAVTGVLATAEEACSAXXXXXXXXXXDDGGRGYA----KHPPAELYEVVARSLAFAGMWEEAASAVRRLERLPPRKIRQQRDSRDGAPPPAPRAPAAGLGTYEMILSAALAAGRPDAVLAQADAARAALREASSS--SSSAYDNG 474
            SSMEGLVLVARAYGA KDW+AV GVLATAEEACS XXXXXXXXXX  G R  A    KHPPAELYEV ARSLA AGMWEEAASAVRRLE+L PRK R+   +       A R  AAGLGTYEMIL AALAAG  +AVLAQADAARAALR+ASSS  SSS YD+G
Sbjct:  655 SSMEGLVLVARAYGAGKDWQAVLGVLATAEEACSXXXXXXXXXXXRGGERAAAVPAVKHPPAELYEVAARSLALAGMWEEAASAVRRLEKLSPRKTREGAGA-------AARTSAAGLGTYEMILGAALAAGCFEAVLAQADAARAALRDASSSPSSSSGYDHG 811
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9995.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.430e-4774.39protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9995contigH-canaliculatus_M_contigs9995:276..980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWM3
PFAMsPPR,PPR_2,PPR_3
Model size480
Max annot lvl2759|Eukaryota
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.61e-47
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-11_002470.1
Descriptionendonuclease activity
Cds size474
COG categoryS
BRITEko00000,ko03016,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854238.994411-UTR-H-canaliculatus_M_contigs9995:275..2811696854238.994411-UTR-H-canaliculatus_M_contigs9995:275..281Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs9995 276..281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854239.0096138-CDS-H-canaliculatus_M_contigs9995:281..5301696854239.0096138-CDS-H-canaliculatus_M_contigs9995:281..530Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9995 282..530 +
1696854239.0222-CDS-H-canaliculatus_M_contigs9995:755..9801696854239.0222-CDS-H-canaliculatus_M_contigs9995:755..980Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9995 756..980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9995.1.1prot_H-canaliculatus_M_contigs9995.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9995 282..980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9995.1.1

>prot_H-canaliculatus_M_contigs9995.1.1 ID=prot_H-canaliculatus_M_contigs9995.1.1|Name=mRNA_H-canaliculatus_M_contigs9995.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=158bp
MEGLVLVARAYGARKDWEAVTGVLATAEEACSAAAAAAAGVHDDDGGRGY
AKHPPAELYEVVARSLAFAGMWEEAASAVRRLERLPPRKIRQQRDSRDGA
PPPAPRAPAAGLGTYEMILSAALAAGRPDAVLAQADAARAALREASSSSS
SAYDNGE*
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mRNA from alignment at H-canaliculatus_M_contigs9995:276..980+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9995.1.1 ID=mRNA_H-canaliculatus_M_contigs9995.1.1|Name=mRNA_H-canaliculatus_M_contigs9995.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=705bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9995:276..980+ (Hapterophycus canaliculatus Oshoro7m male)
AGCTCGATGGAAGGCCTGGTCCTTGTCGCTCGGGCCTACGGCGCCCGCAA
GGACTGGGAGGCCGTGACCGGGGTTCTCGCGACGGCCGAGGAGGCGTGTT
CGGCAGCCGCAGCCGCAGCCGCCGGCGTCCACGACGACGACGGTGGACGG
GGGTACGCCAAGCATCCGCCGGCCGAGCTGTACGAGGTGGTGGCAAGGTC
GCTGGCGTTTGCGGGCATGTGGGAGGAGGCAGCGAGCGCGGTCAGGAGGC
TGGAGGTATGATACGTGCGTGTGCATCGCCGACCGTCTCTCTCGTCGCCG
CCCCTTCCCCGCCGCCAGTTGTTGTTGTCGTGCTTTTTGCGGATAGCATT
GTGCGCACGCGCCTGGTCGAGCTCCTTCGCGTCCTTCGACCTGCCTCCCA
ACACGGGTCCGTATTTTCTCCTTCGGCCCCCGTGTGTGCTTTCTCTCGTC
TGCTCTCGGCGTGCTGTGGTTCCGGAGCAGAGGCTTCCCCCTCGGAAGAT
TCGGCAGCAAAGGGACAGCAGAGACGGGGCCCCTCCGCCAGCACCACGCG
CCCCCGCCGCGGGCCTCGGAACGTACGAGATGATCCTGAGCGCCGCTCTG
GCCGCCGGCCGTCCGGACGCCGTTCTGGCGCAGGCGGACGCCGCTCGCGC
CGCTCTCCGAGAAGCCTCTTCTTCCTCCTCGTCGGCGTACGACAACGGCG
AGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9995:276..980+

>mRNA_H-canaliculatus_M_contigs9995.1.1 ID=mRNA_H-canaliculatus_M_contigs9995.1.1|Name=mRNA_H-canaliculatus_M_contigs9995.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=474bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9995:276..980+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAAGGCCTGGTCCTTGTCGCTCGGGCCTACGGCGCCCGCAAGGACTG
GGAGGCCGTGACCGGGGTTCTCGCGACGGCCGAGGAGGCGTGTTCGGCAG
CCGCAGCCGCAGCCGCCGGCGTCCACGACGACGACGGTGGACGGGGGTAC
GCCAAGCATCCGCCGGCCGAGCTGTACGAGGTGGTGGCAAGGTCGCTGGC
GTTTGCGGGCATGTGGGAGGAGGCAGCGAGCGCGGTCAGGAGGCTGGAGA
GGCTTCCCCCTCGGAAGATTCGGCAGCAAAGGGACAGCAGAGACGGGGCC
CCTCCGCCAGCACCACGCGCCCCCGCCGCGGGCCTCGGAACGTACGAGAT
GATCCTGAGCGCCGCTCTGGCCGCCGGCCGTCCGGACGCCGTTCTGGCGC
AGGCGGACGCCGCTCGCGCCGCTCTCCGAGAAGCCTCTTCTTCCTCCTCG
TCGGCGTACGACAACGGCGAGTGA
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