prot_H-canaliculatus_M_contigs9768.1.1 (polypeptide) Hapterophycus canaliculatus Oshoro7m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_M_contigs9768.1.1
Unique Nameprot_H-canaliculatus_M_contigs9768.1.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Sequence length135
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Match: D8LMI4_ECTSI (RpoD family RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMI4_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.080e-56
Identity = 97/135 (71.85%), Postives = 112/135 (82.96%), Query Frame = 0
Query:    1 HLPPKNRQDLAASLDISERQVAKLLRWANDCRSIDRVLVPGGATLGDIIPGSQSTEAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPAVAAVMGVSRQYVGRVHQIALNKMRASLQEDRQLRFY 135
            H  P+  QDLA SL ISERQ+AKLLR A DC+S++RVLV  G  LG++IPG+QS E +LRRLDAEASLV LL  LKPQEE+VIVHRYGLFGR +KSTPAVAAVMGVSRQYVGRVH+ AL KMRAS + D+Q RF+
Sbjct:   82 HCGPQTSQDLATSLGISERQLAKLLRRAKDCQSMNRVLVSSGVALGEMIPGAQSCEDILRRLDAEASLVGLLGTLKPQEEEVIVHRYGLFGRRRKSTPAVAAVMGVSRQYVGRVHRSALEKMRASFEADQQPRFH 216          
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Match: A0A6H5K7U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U2_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 7.990e-54
Identity = 96/135 (71.11%), Postives = 113/135 (83.70%), Query Frame = 0
Query:    1 HLPPKNRQDLAASLDISERQVAKLLRWANDCRSIDRVLVPGGATLGDIIPGSQSTEAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPAVAAVMGVSRQYVGRVHQIALNKMRASLQEDRQLRFY 135
            H  P+  QDLA SLD+SERQ+AKLLR A DC+S+++VLV  G TLG++IPG+QS E +LRRLDAEASLV LL  LKPQE +VIVHRYGLFGR +KSTPAVAAVMGVSRQYVGRVH+ AL KMRAS + D+Q RF+
Sbjct:  331 HCGPQTSQDLATSLDMSERQLAKLLRRAKDCQSMNKVLVSSGVTLGEMIPGAQSCENILRRLDAEASLVGLLGTLKPQEVEVIVHRYGLFGRRRKSTPAVAAVMGVSRQYVGRVHRSALEKMRASFEADQQPRFH 465          
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Match: A0A1G1E3Q1_9BACT (RNA_pol_sigma70 domain-containing protein n=1 Tax=Nitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22 TaxID=1801687 RepID=A0A1G1E3Q1_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 7.770e-9
Identity = 34/122 (27.87%), Postives = 69/122 (56.56%), Query Frame = 0
Query:    9 DLAASLDISERQVAKLLRWANDCRSIDRVLVPGGATLGDIIPGSQ--STEAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPAVAAVMGVSRQYVGRVHQIALNKMRASLQE 128
            ++A  +D++  +V  LLR + +  S++  +    + LGD +   +  S    + RLD    + ++L  L P+EEQV+  R+G+ G  + +   +  +MGVSR+ + ++ Q+AL K++  L++
Sbjct:  361 EVAKGIDLTPEEVRDLLRMSKNPLSLETPVGNEDSCLGDFVRDKKIDSPAETIIRLDLSRQVKKVLSTLTPREEQVVKMRFGIAGTTEHTLQEIGNIMGVSRERIRQIEQLALKKLKNPLRK 482          
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Match: A0A359B8L7_9FIRM (RNA polymerase subunit sigma n=1 Tax=Desulfotomaculum sp. TaxID=41211 RepID=A0A359B8L7_9FIRM)

HSP 1 Score: 57.0 bits (136), Expect = 3.730e-8
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 0
Query:   56 EAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPAVAAVMGVSRQYVGRVHQIALNKM 122
            E V + LD E  L R L+HL PQE  V+V RYGL G+ +++   +A  MG+SR YV R+ + A++++
Sbjct:   13 ELVAKNLDCE-QLWRKLKHLTPQERNVLVLRYGLRGKKRRTQKEIAKNMGISRSYVSRIEKRAIDRL 78          
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Match: UPI0013571084 (RNA polymerase sigma factor RpoS n=2 Tax=unclassified Psychromonas TaxID=2614957 RepID=UPI0013571084)

HSP 1 Score: 58.9 bits (141), Expect = 1.480e-7
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 0
Query:    8 QDLAASLDISERQVAKLLRWANDCRSIDRVLVPGGAT-LGDIIPGSQST--EAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPAVAAVMGVSRQYVGRVHQIALNKMRASLQE 128
            +D+A  LD+S ++V+K+L+      S+D  L     T L DIIP S  +  E  L+  + +  +V  LE L P++ +V+  R+GL G    +   V   +G++R+ V ++   AL  +R  L E
Sbjct:  198 EDIAKELDVSAKEVSKILKLNERISSVDTPLGQSSNTELLDIIPDSNESTPENTLQTNNMKLRIVDWLEDLNPKQREVLARRFGLLGYEADTLENVGKEIGLTRERVRQIQVEALKALREVLSE 321          
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Match: A0A0F2PCZ8_9FIRM (RNA polymerase sigma factor n=1 Tax=Peptococcaceae bacterium BRH_c8a TaxID=1629715 RepID=A0A0F2PCZ8_9FIRM)

HSP 1 Score: 57.0 bits (136), Expect = 3.740e-7
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 0
Query:   56 EAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPAVAAVMGVSRQYVGRVHQIALNKM 122
            E V + LD E  L R L+HL PQE  V+V RYGL G+ +++   +A  MG+SR YV R+ + A++++
Sbjct:  143 ELVAKNLDCE-QLWRKLKHLTPQERNVLVLRYGLRGKKRRTQKEIAKNMGISRSYVSRIEKRAIDRL 208          
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Match: UPI0004050881 (RNA polymerase sigma factor RpoS n=2 Tax=Psychromonas TaxID=67572 RepID=UPI0004050881)

HSP 1 Score: 56.2 bits (134), Expect = 1.340e-6
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 0
Query:    8 QDLAASLDISERQVAKLLRWANDCRSIDRVLVPGGAT----LGDIIPGSQST--EAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPAVAAVMGVSRQYVGRVHQIALNKMRASLQE 128
            +D+A  LD+S ++VAK+L+      S+D   +P G      L DIIP  +    E  L+  D +  +V  LE L P++ +V+  R+GL G    +   V   +G++R+ V ++   AL  +R  L E
Sbjct:  205 EDIAKELDVSAKEVAKILKLNERISSVD---IPIGNNSDKELLDIIPDRKEATPENELQSDDMKLRIVDWLEDLNPKQREVLARRFGLLGYEAATLENVGKEIGLTRERVRQIQVEALKSLRDVLSE 328          
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Match: A0A6J4HR89_9ACTN (RNA polymerase sigma factor n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4HR89_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 1.720e-6
Identity = 40/123 (32.52%), Postives = 66/123 (53.66%), Query Frame = 0
Query:    9 DLAASLDISERQVAKLLRWANDCRSI-DRVLVPGGATLGDII-------PGSQSTEAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPAVAAVMGVSRQYVGRVHQIALNKMR 123
            +LA  LDI ERQVA++ R+A+D  S+ D +   G A LGDI+       P   + EA+L      A L RLL  L  +E +++  R+GL     ++   V     ++R+ + ++   A++K+R
Sbjct:  180 ELAVELDIPERQVAEIFRYASDTASLSDPLRDDGDAELGDIVEDRSAVSPFDAAAEALL-----PAELERLLAPLAEREREILRLRFGLDRGEPRTLDEVGESFNLTRERIRQIEARAMSKLR 297          
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Match: UPI001EE98705 (RNA polymerase sigma factor RpoS n=1 Tax=Psychromonas antarctica TaxID=67573 RepID=UPI001EE98705)

HSP 1 Score: 55.8 bits (133), Expect = 1.720e-6
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 0
Query:    8 QDLAASLDISERQVAKLLRWANDCRSIDRVLVPGGAT----LGDIIPGSQ--STEAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPAVAAVMGVSRQYVGRVHQIALNKMRASLQE 128
            +D+A  LD+S ++VAK+L+      S+D   +P G      L DIIP  +  S E  L+  D +  +V  LE L P++ +V+  R+GL G    +   V   +G++R+ V ++   AL  +R  L +
Sbjct:  177 EDIAKELDVSAKEVAKILKLNERISSVD---IPIGNNSDKELLDIIPDRKEASPENELQDDDMKLRIVDWLEDLNPKQREVLARRFGLLGYEAATLENVGKEIGLTRERVRQIQVEALKSLRDVLSQ 300          
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Match: A0A0H3K505_SYNP6 (RNA polymerase sigma factor n=3 Tax=Synechococcus elongatus TaxID=32046 RepID=A0A0H3K505_SYNP6)

HSP 1 Score: 55.8 bits (133), Expect = 1.740e-6
Identity = 40/123 (32.52%), Postives = 65/123 (52.85%), Query Frame = 0
Query:    6 NRQDLAASLDISERQVAKLLRWANDCRSIDRVLV--PGGATLGDII--PGSQSTEAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPA-VAAVMGVSRQYVGRVHQIALNKMR 123
            +RQ++A ++ +    +  +LR +  C S+D  +    G + LG++I  P       ++        L   LEHL PQE QV+  R+GL G G++ T A +  +M VSR+ V +V   AL K+R
Sbjct:  185 SRQEIAEAVQLPLNDLETILRQSRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMDIMENAMQREQLDAWLEHLTPQERQVLYLRFGL-GDGERHTLAEIGRMMEVSRERVRQVEVKALRKLR 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9768.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LMI4_ECTSI1.080e-5671.85RpoD family RNA polymerase sigma factor n=1 Tax=Ec... [more]
A0A6H5K7U2_9PHAE7.990e-5471.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1G1E3Q1_9BACT7.770e-927.87RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A359B8L7_9FIRM3.730e-843.28RNA polymerase subunit sigma n=1 Tax=Desulfotomacu... [more]
UPI00135710841.480e-731.45RNA polymerase sigma factor RpoS n=2 Tax=unclassif... [more]
A0A0F2PCZ8_9FIRM3.740e-743.28RNA polymerase sigma factor n=1 Tax=Peptococcaceae... [more]
UPI00040508811.340e-631.50RNA polymerase sigma factor RpoS n=2 Tax=Psychromo... [more]
A0A6J4HR89_9ACTN1.720e-632.52RNA polymerase sigma factor n=1 Tax=uncultured Aci... [more]
UPI001EE987051.720e-631.50RNA polymerase sigma factor RpoS n=1 Tax=Psychromo... [more]
A0A0H3K505_SYNP61.740e-632.52RNA polymerase sigma factor n=3 Tax=Synechococcus ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.140.160coord: 3..129
e-value: 4.6E-15
score: 58.1
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 71..124
e-value: 1.5E-6
score: 27.6
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 41..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9768contigH-canaliculatus_M_contigs9768:147..2922 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9768.1.1mRNA_H-canaliculatus_M_contigs9768.1.1Hapterophycus canaliculatus Oshoro7m malemRNAH-canaliculatus_M_contigs9768 147..2922 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_M_contigs9768.1.1 ID=prot_H-canaliculatus_M_contigs9768.1.1|Name=mRNA_H-canaliculatus_M_contigs9768.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=135bp
HLPPKNRQDLAASLDISERQVAKLLRWANDCRSIDRVLVPGGATLGDIIP
GSQSTEAVLRRLDAEASLVRLLEHLKPQEEQVIVHRYGLFGRGKKSTPAV
AAVMGVSRQYVGRVHQIALNKMRASLQEDRQLRFY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013324RNA_pol_sigma_r3/r4-like
IPR007630RNA_pol_sigma70_r4