mRNA_H-canaliculatus_M_contigs9665.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9665.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9665.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9665.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ4_ECTSI)

HSP 1 Score: 507 bits (1306), Expect = 1.270e-172
Identity = 292/414 (70.53%), Postives = 322/414 (77.78%), Query Frame = 1 
Query:    1 EVMSMTLDTACSIALAQELLAALVTLANRDPAKILQIYSSRLCFYCDSQSDATMQDQVAEVGGMIRAVEYLTRVLFMGGQSDLCAQFLYADLTANPLGTEPFPSQLSEEELNDLLCGRKGYPHVAQLINGCLASRLASVRRCAYETLSNIALFAKEHRGPKAFDMLLRLRLRGTEKDPRLVVVLAALVWEVVFIDQELQVDRLVGSGAPGSYGLLDDLFAESEEVRLVAFHSVGRLLFHLWIPSYARAASKRPLSPLSRQKKRHRRHRG--------DIKDEQXXXXXXXXXXXEGAVDEPGVSPLGPSLPSSNGSTAGAAVPACAEQALLRVALILHEDTSTENDSSSGSSACQDNGRKRHFDSRVRAAARGLASGLRSRKRRARHLLARSALLVVDHGLANGSLDGLRARFP 1218
            +++SMTLDT C +ALAQELLAALV LA+RDPAKIL++Y SRLCFYCDSQ+D  MQDQVAEVGGMIRA+E+ TRVLF GGQSDLCAQFLYAD+++  LG   F S LSEE+LNDLLCGRK YPHVAQLINGCLASRLASVRRCAYETLSN+ALFAK HRGPKAFDMLLRLRL G EKDPRL+ VLAALVWEVVF+DQ LQ +RLVGSG PGSYGLLDDLFAES EVRLVAFHSV RLLFH WIP    A ++ P  P  RQ +RHR +RG        +  DE  XXXXXXXXX E     PG S    S P  N       VPACAEQA+LRV+LILHE TS  ++            ++R FD RVRAAAR LASGLR+RKRRARHLL RS LLVVDHGLANGSLDGLR RFP
Sbjct:   92 QIVSMTLDTGCPVALAQELLAALVALADRDPAKILEVYGSRLCFYCDSQTDPNMQDQVAEVGGMIRALEHFTRVLFTGGQSDLCAQFLYADVSSASLGAASFSSNLSEEDLNDLLCGRKDYPHVAQLINGCLASRLASVRRCAYETLSNVALFAKAHRGPKAFDMLLRLRLGGAEKDPRLIAVLAALVWEVVFVDQALQDERLVGSGTPGSYGLLDDLFAESVEVRLVAFHSVSRLLFHAWIPKEGDAVNREP-PPPRRQSRRHRSNRGIQEPEGGEEYCDEDNXXXXXXXXXEELRFRPPGRS----SSPGYNN------VPACAEQAVLRVSLILHETTSVNDN------------KRRRFDPRVRAAARSLASGLRARKRRARHLLERSVLLVVDHGLANGSLDGLRVRFP 482
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9665.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.270e-17270.53protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9665contigH-canaliculatus_M_contigs9665:733..4439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1263
Hectar predicted targeting categorysignal peptide
Exons8
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001270.1
Cds size1257
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9665.1.1prot_H-canaliculatus_M_contigs9665.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9665 739..4439 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854221.0386934-UTR-H-canaliculatus_M_contigs9665:732..7381696854221.0386934-UTR-H-canaliculatus_M_contigs9665:732..738Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs9665 733..738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854221.0537746-CDS-H-canaliculatus_M_contigs9665:738..8311696854221.0537746-CDS-H-canaliculatus_M_contigs9665:738..831Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9665 739..831 +
1696854221.0658107-CDS-H-canaliculatus_M_contigs9665:1051..11321696854221.0658107-CDS-H-canaliculatus_M_contigs9665:1051..1132Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9665 1052..1132 +
1696854221.0767956-CDS-H-canaliculatus_M_contigs9665:1518..16871696854221.0767956-CDS-H-canaliculatus_M_contigs9665:1518..1687Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9665 1519..1687 +
1696854221.088446-CDS-H-canaliculatus_M_contigs9665:2068..21931696854221.088446-CDS-H-canaliculatus_M_contigs9665:2068..2193Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9665 2069..2193 +
1696854221.1000092-CDS-H-canaliculatus_M_contigs9665:2645..27381696854221.1000092-CDS-H-canaliculatus_M_contigs9665:2645..2738Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9665 2646..2738 +
1696854221.1128821-CDS-H-canaliculatus_M_contigs9665:3237..33311696854221.1128821-CDS-H-canaliculatus_M_contigs9665:3237..3331Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9665 3238..3331 +
1696854221.1255105-CDS-H-canaliculatus_M_contigs9665:3792..40421696854221.1255105-CDS-H-canaliculatus_M_contigs9665:3792..4042Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9665 3793..4042 +
1696854221.1410053-CDS-H-canaliculatus_M_contigs9665:4087..44391696854221.1410053-CDS-H-canaliculatus_M_contigs9665:4087..4439Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9665 4088..4439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9665.1.1

>prot_H-canaliculatus_M_contigs9665.1.1 ID=prot_H-canaliculatus_M_contigs9665.1.1|Name=mRNA_H-canaliculatus_M_contigs9665.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=419bp
MSMTLDTACSIALAQELLAALVTLANRDPAKILQIYSSRLCFYCDSQSDA
TMQDQVAEVGGMIRAVEYLTRVLFMGGQSDLCAQFLYADLTANPLGTEPF
PSQLSEEELNDLLCGRKGYPHVAQLINGCLASRLASVRRCAYETLSNIAL
FAKEHRGPKAFDMLLRLRLRGTEKDPRLVVVLAALVWEVVFIDQELQVDR
LVGSGAPGSYGLLDDLFAESEEVRLVAFHSVGRLLFHLWIPSYARAASKR
PLSPLSRQKKRHRRHRGDIKDEQEQEQEQEQEQGEGAVDEPGVSPLGPSL
PSSNGSTAGAAVPACAEQALLRVALILHEDTSTENDSSSGSSACQDNGRK
RHFDSRVRAAARGLASGLRSRKRRARHLLARSALLVVDHGLANGSLDGLR
ARFPAPTRSWVRSGGGDRG
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mRNA from alignment at H-canaliculatus_M_contigs9665:733..4439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9665.1.1 ID=mRNA_H-canaliculatus_M_contigs9665.1.1|Name=mRNA_H-canaliculatus_M_contigs9665.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3707bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9665:733..4439+ (Hapterophycus canaliculatus Oshoro7m male)
GAAGTGATGAGCATGACCTTGGACACCGCATGCTCCATTGCTTTGGCCCA
AGAGTTACTTGCAGCCCTCGTGACCCTCGCCAATAGAGACCCTGCTAAGG
TAAGCGGTGAATGTGATCTTGACAAGGGTGCGCTTGAGTAACCTGGAAGC
AAATTCCTCTGGCATTTCCTTCTGTAGCGTCCTTTGATGATCATTCGATA
AGCGTTTCGTGACTAGTTTCCGACACCGGGCTAGACCTTCTTGACAAACT
CATACCAGACGGGACATGGCAGGCTAAGGCGCACATCCGTTCAATACCCC
AAACCGCGTTATTTTCCAGATCCTGCAAATATACTCGTCTCGGCTGTGCT
TCTACTGTGACTCCCAAAGCGACGCGACCATGCAAGACCAGGTGGCAGAG
GTAAAGCATGGCTTGGTTCTGGGTTTCGGTTCACCAATCGTCTCCTTGAT
CACGACACTAACTGGAAAGGGTGGGCTGGAGTGGAGGCCTGTCATACGCA
GTGGGGCACTGCAGTGGGATCCCTAACTTTGACAAATGGACTACCCGAGT
CTTTAGAAGTCGTGTGGGTGGGAGGCGTTCTTCACTCCCCGATGGCCCTC
CTTATGGGGGTATCGGACAAGTTAGAAAATTTATGCGGGACGAAAACGAC
TGAAACAAGATATATCGTTTTTTCCTGATGACTCCAAGTGATCCATCGAG
CTAGCAGATTGGGAGCAGGAATCGGATGTTGGATTGTCTGAACGTCCATC
ATTGTTCACCGATCTCTGGTCGCCCTTGGGCAACAGGTTGGAGGCATGAT
CCGGGCGGTGGAGTACTTGACGAGGGTTCTTTTCATGGGGGGGCAGAGCG
ACCTGTGCGCGCAGTTCCTGTACGCAGACCTCACGGCGAACCCCTTGGGA
ACCGAGCCTTTCCCTAGCCAGCTGTCGGAGGAGGAGCTGAATGACTTGCT
CTGCGGTGAGTGACACCATGCCGCTGATGACGGCTGCTTCGATCCCCCGT
CCTCACCAGATTTCCGATGCTGTGCCCTTGCAAGCGTATTCAGATGGTCA
CCGCTGTCATGTTTTATTTTCCCGCAGGACCACCACACGAACATCCATTG
GAAACCGTTTCGAACCATCAACCAACCTCCAAGTGCAGAGCTGGTTGTAG
GATAACCCGATCGCGACAGCTTCGTTTACATCGTCCCGGAGCTTTGGGAA
CAGGAAAATGTTGCGTATACGAGGATTTTCTTTCTCCCTTTCTGTCCGTC
TTTTTGTCACGGAGTTTTCGTTTTATTCTCTTTGTGCAGTCGTTCGCCCC
TTCGCTAACTTTGCCACCGCTTTTCTCGAGGCTCAGGTCGGAAGGGCTAC
CCGCACGTGGCCCAGCTTATTAACGGTTGCTTGGCCTCGCGGCTCGCCTC
CGTCCGGCGCTGCGCGTACGAGACCCTGTCCAACATTGCTCTCTTCGCCA
AGGAGCACCGGGTACGACCGGGGGCGACGTGTTGTTGTTGTTGTGTGATC
TTCAAAGCCGTTGGCCACCTACGTTGGTCGGCTAATACTATCTCTCATTC
CGTTTTTTCGGGTGCTCCATATCTCTCTGTGACCGCTCCTTAACGCGGCT
GGCTGCGGCTTCCGCGTGGTTTCCTCACAGAATGAGACAACGACTACTCG
TGTTTGATCTCACTGGAATTCCTCAACGCCGTTGCCGCTGTCATCGCGAT
TGTCGTCTCGTCGGCCATAACCCCACAGCAAAGCTTCGCAACACCTTAGC
ATTCCTATCGAGGTTTGCGTGAATATTTCCTAGAACAAAATGACAACACT
GTAGGATCACCTCCTGAGGTACGCCGTGCGAGGCGTAGGTTGAGGCTGCT
GTTGGGTTCCAAACACTTTTCCTTCCATCCAGCAAGCGCAGCGTCGTCTT
GAAAACCACGCAGGGGCCGAAGGCGTTTGATATGCTGCTGCGTTTGCGTC
TCCGGGGGACGGAAAAGGATCCTCGCTTGGTCGTCGTTCTGGCCGCCCTT
GTGTGGGTGAGGCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTTACTGC
TGCTGCGGCTGCTGCTGTCGTTGTTGGTGATGTTGCTCTAGTCGTCGTCG
TCGTCGTCGTCGTCTCCATTGTCTGCCCACATCCCTGTGGACTAACAAAC
CATGGTCGTGTGTTTACCCAAAAAGAAAGAGATCACTTCCTTCTGGCATA
CGAAGAAGTGCGGTACCGAGCATGAACCAGACCCACAAACGCATCCGTCA
AAAACGCCCCCTTTCTTGACCGAGGACGACGCAACGTAACGCGTTCTCCG
TGGTGTCGTAGACAAGTACCTTACTCTCCGATCAAACAATTCACCTCTGT
TGGTTTTATGCATCGCCCATCGCCTCTTGAAAACACCTTTGGCACGTCGC
GGCTTGCCAACTGACTGCTGAAGAGCAGTAGGAGACGCAAGCGTACACCT
ATTATGAAACACAACCCGGGAAACAAAATCGCGTCTCTACGCACAAACTT
CGCAGGAAGTGGTGTTCATCGACCAGGAGCTGCAAGTCGATCGCCTCGTC
GGCTCTGGAGCCCCCGGATCTTACGGCCTGCTGGACGATTTGTTCGCAGG
TAGTCTCGGTTTTCTCCTGGACTTCCGTGGTCTGCGTGAAGTTTGCCGTC
CCTTCCGAGAGGGGCTGTTTCTGGAAGTGCTATACCTGATCGACACGATG
TCGTCAGTAATGTCGAACAGCTCACGGGGCCCCTTCGATCGCACAAGGTC
CCACGCAACACTCAATACTTACTTGCCTGGTTAGTAAAGATCAGCCGGCA
AGCGCTTCGTCCCACTTCATCCTGCAGCGTATTTCCGTTCCGTTCCATCC
TTGAATGCACGCGCCGGCTTGTCAATGTTCCCAAAAGTACTACAGGGGCT
GTGCGTCCTAACATGTATCACACCTCTGATACTAGATGCCCCTCTTCTCT
CCCGTCTTCCTTGCCCCTCTCTACGCCCTGGGCACGCCTGCATCTGTATC
TCACCCGGGTTGTTGATCGCACCTGCAACTGCAAAACATACCGCGATGGC
GGAGGTACAGAATCGGAAGAGGTTCGCCTCGTAGCGTTCCACTCCGTGGG
GCGCCTTCTCTTCCATCTGTGGATCCCCTCCTACGCGCGCGCGGCAAGCA
AACGGCCCCTGTCACCTTTGTCCAGGCAAAAGAAGCGCCACCGCCGCCAC
CGAGGTGACATCAAAGACGAACAGGAACAGGAACAGGAACAGGAACAGGA
ACAGGGAGAGGGGGCGGTAGACGAGCCGGGGGTTTCCCCCCTAGGTCCCT
CATTGCCATCGTCCTCTTGCAGCATCAGCAGCAGAATCAGCAGCAGCAGC
AGCAGCAGTAATGGCAGCACCGCCGGTGCCGCGGTCCCCGCGTGCGCCGA
GCAAGCGCTGCTCCGCGTCGCCCTCATCCTGCACGAGGACACGAGCACCG
AAAACGACAGCAGCAGCGGCAGCAGCGCTTGCCAAGACAACGGCAGAAAG
AGGCATTTTGACTCCAGGGTCAGGGCGGCCGCCCGCGGCCTGGCCTCTGG
GCTGCGCTCCCGAAAGCGGAGGGCTAGGCACTTGCTTGCGCGATCGGCGC
TGCTCGTGGTGGACCACGGTCTGGCAAACGGCTCGTTGGACGGGCTCCGA
GCGCGATTTCCTGCCCCGACTCGATCATGGGTACGCAGTGGTGGTGGTGA
TCGTGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9665:733..4439+

>mRNA_H-canaliculatus_M_contigs9665.1.1 ID=mRNA_H-canaliculatus_M_contigs9665.1.1|Name=mRNA_H-canaliculatus_M_contigs9665.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1257bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9665:733..4439+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAGCATGACCTTGGACACCGCATGCTCCATTGCTTTGGCCCAAGAGTT
ACTTGCAGCCCTCGTGACCCTCGCCAATAGAGACCCTGCTAAGATCCTGC
AAATATACTCGTCTCGGCTGTGCTTCTACTGTGACTCCCAAAGCGACGCG
ACCATGCAAGACCAGGTGGCAGAGGTTGGAGGCATGATCCGGGCGGTGGA
GTACTTGACGAGGGTTCTTTTCATGGGGGGGCAGAGCGACCTGTGCGCGC
AGTTCCTGTACGCAGACCTCACGGCGAACCCCTTGGGAACCGAGCCTTTC
CCTAGCCAGCTGTCGGAGGAGGAGCTGAATGACTTGCTCTGCGGTCGGAA
GGGCTACCCGCACGTGGCCCAGCTTATTAACGGTTGCTTGGCCTCGCGGC
TCGCCTCCGTCCGGCGCTGCGCGTACGAGACCCTGTCCAACATTGCTCTC
TTCGCCAAGGAGCACCGGGGGCCGAAGGCGTTTGATATGCTGCTGCGTTT
GCGTCTCCGGGGGACGGAAAAGGATCCTCGCTTGGTCGTCGTTCTGGCCG
CCCTTGTGTGGGAAGTGGTGTTCATCGACCAGGAGCTGCAAGTCGATCGC
CTCGTCGGCTCTGGAGCCCCCGGATCTTACGGCCTGCTGGACGATTTGTT
CGCAGAATCGGAAGAGGTTCGCCTCGTAGCGTTCCACTCCGTGGGGCGCC
TTCTCTTCCATCTGTGGATCCCCTCCTACGCGCGCGCGGCAAGCAAACGG
CCCCTGTCACCTTTGTCCAGGCAAAAGAAGCGCCACCGCCGCCACCGAGG
TGACATCAAAGACGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGG
GAGAGGGGGCGGTAGACGAGCCGGGGGTTTCCCCCCTAGGTCCCTCATTG
CCATCCAGTAATGGCAGCACCGCCGGTGCCGCGGTCCCCGCGTGCGCCGA
GCAAGCGCTGCTCCGCGTCGCCCTCATCCTGCACGAGGACACGAGCACCG
AAAACGACAGCAGCAGCGGCAGCAGCGCTTGCCAAGACAACGGCAGAAAG
AGGCATTTTGACTCCAGGGTCAGGGCGGCCGCCCGCGGCCTGGCCTCTGG
GCTGCGCTCCCGAAAGCGGAGGGCTAGGCACTTGCTTGCGCGATCGGCGC
TGCTCGTGGTGGACCACGGTCTGGCAAACGGCTCGTTGGACGGGCTCCGA
GCGCGATTTCCTGCCCCGACTCGATCATGGGTACGCAGTGGTGGTGGTGA
TCGTGGT
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