mRNA_H-canaliculatus_M_contigs9608.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9608.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9608.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9608.1.1 vs.
Match: Herpes_ori_bp (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 9.960e-60
Identity = 107/165 (64.85%), Postives = 126/165 (76.36%), Query Frame = 1 
Query:    1 MIIMDEIRSTLSSAVCRTTNNGHVNENMEKLQHLIYLADRVICADADLHIDGAVESFYAAVFKGEEIHRINHMAGGQELHVKWADDAPFVHKIQQDLHDGKRIGVCCGSAQELKMLERVALEIVVKDEVGIYYANSPKQAEIADVSAYWPKYKLVGFTSTITVSV 495
            MIIMDE+RSTL+SA                   LIY ADRVICADADL++DGAV+ FY  VFK EEIH I+H  GGQELHV++ D A FV  I +DL  GKRIGVCCGSA ELK +E++AL+IV K+++GIYYANSP+QAEIADVSA+WPKYKL+G TSTITVSV
Sbjct:  468 MIIMDELRSTLNSA-------------------LIYQADRVICADADLYVDGAVQCFYDTVFKNEEIHHIDHKGGGQELHVRFTDSAAFVKMILKDLRAGKRIGVCCGSALELKTIEKLALDIVHKEKLGIYYANSPQQAEIADVSAHWPKYKLIGLTSTITVSV 613
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BLAST of mRNA_H-canaliculatus_M_contigs9608.1.1 vs.
Match: Origin-binding (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI9_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.840e-10
Identity = 43/165 (26.06%), Postives = 81/165 (49.09%), Query Frame = 1 
Query:    1 MIIMDEIRSTLSSAVCRTTNNGHVNENMEKLQHLIYLADRVICADADLHIDGAVESFYAAVFKGEEIHRINHMAGGQELHVKWADDAPFVHKIQQDLHDGKRIGVCCGSAQELKMLER-VALEIVVKDEVGIYYANSPKQAEIADVSAYWPKYKLVGFTSTITVS 492
            +II+DE+RS L+SA    TN   +             A +VI +DAD  +DGAV+ F    F      R+      ++  +   +       +  D+ +G+ I    GS   ++ +E+ + LE+    ++  Y   SP + E+ ++  +WP+Y+++ +TS +TV+
Sbjct:  483 IIIIDEVRSVLTSATTYATNRSSLXXXXXXXXXXXDHAQKVILSDADSDLDGAVQYFIHNNFDRYTEIRLEKPVMRRKYRLMEKNKTETT--MLDDIRNGRHIVASFGSRTHMEAVEKLIHLELGSDIKIRTYTGQSPHKKELKNIEKFWPEYQVIMYTSCVTVA 645
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BLAST of mRNA_H-canaliculatus_M_contigs9608.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8T6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.290e-10
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  244 KWADDAPFVHKIQQDLHDGKRIGVCCGSAQELKMLERVALEIVVKDEVGIYYANSP 411
            ++  DA    KIQQ+    K+IG+C GSAQELK LE++AL IV +++VGIYY NSP
Sbjct:    3 RFKHDAAIARKIQQE---NKQIGMCRGSAQELKTLEKLALAIVGEEKVGIYYGNSP 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9608.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Herpes_ori_bp9.960e-6064.85domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Origin-binding2.840e-1026.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.290e-1055.36protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9608contigH-canaliculatus_M_contigs9608:1624..2118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size495
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_001320.1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854217.8788803-CDS-H-canaliculatus_M_contigs9608:1623..21181696854217.8788803-CDS-H-canaliculatus_M_contigs9608:1623..2118Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9608 1624..2118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9608.1.1prot_H-canaliculatus_M_contigs9608.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9608 1624..2118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9608.1.1

>prot_H-canaliculatus_M_contigs9608.1.1 ID=prot_H-canaliculatus_M_contigs9608.1.1|Name=mRNA_H-canaliculatus_M_contigs9608.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=165bp
MIIMDEIRSTLSSAVCRTTNNGHVNENMEKLQHLIYLADRVICADADLHI
DGAVESFYAAVFKGEEIHRINHMAGGQELHVKWADDAPFVHKIQQDLHDG
KRIGVCCGSAQELKMLERVALEIVVKDEVGIYYANSPKQAEIADVSAYWP
KYKLVGFTSTITVSV
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mRNA from alignment at H-canaliculatus_M_contigs9608:1624..2118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9608.1.1 ID=mRNA_H-canaliculatus_M_contigs9608.1.1|Name=mRNA_H-canaliculatus_M_contigs9608.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=495bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9608:1624..2118+ (Hapterophycus canaliculatus Oshoro7m male)
ATGATCATTATGGACGAGATACGATCGACGCTCAGCTCGGCCGTGTGCCG
CACAACGAACAACGGGCACGTGAACGAGAACATGGAGAAGCTCCAACACC
TCATCTACCTCGCGGACAGGGTGATCTGCGCAGACGCCGACCTACACATC
GACGGAGCGGTCGAGAGCTTCTACGCCGCCGTGTTCAAGGGCGAAGAAAT
CCACCGGATCAATCACATGGCGGGAGGGCAAGAGCTCCACGTGAAGTGGG
CAGACGACGCCCCCTTCGTGCACAAGATTCAGCAGGATTTGCACGACGGG
AAAAGGATCGGCGTTTGTTGCGGCTCGGCTCAGGAGCTCAAGATGCTCGA
AAGGGTGGCTCTGGAGATTGTTGTTAAGGATGAGGTGGGGATATACTACG
CCAACTCTCCCAAACAAGCAGAGATTGCCGACGTGTCCGCCTACTGGCCG
AAGTACAAACTCGTAGGATTTACGTCAACAATCACAGTGTCTGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9608:1624..2118+

>mRNA_H-canaliculatus_M_contigs9608.1.1 ID=mRNA_H-canaliculatus_M_contigs9608.1.1|Name=mRNA_H-canaliculatus_M_contigs9608.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=495bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9608:1624..2118+ (Hapterophycus canaliculatus Oshoro7m male)
ATGATCATTATGGACGAGATACGATCGACGCTCAGCTCGGCCGTGTGCCG
CACAACGAACAACGGGCACGTGAACGAGAACATGGAGAAGCTCCAACACC
TCATCTACCTCGCGGACAGGGTGATCTGCGCAGACGCCGACCTACACATC
GACGGAGCGGTCGAGAGCTTCTACGCCGCCGTGTTCAAGGGCGAAGAAAT
CCACCGGATCAATCACATGGCGGGAGGGCAAGAGCTCCACGTGAAGTGGG
CAGACGACGCCCCCTTCGTGCACAAGATTCAGCAGGATTTGCACGACGGG
AAAAGGATCGGCGTTTGTTGCGGCTCGGCTCAGGAGCTCAAGATGCTCGA
AAGGGTGGCTCTGGAGATTGTTGTTAAGGATGAGGTGGGGATATACTACG
CCAACTCTCCCAAACAAGCAGAGATTGCCGACGTGTCCGCCTACTGGCCG
AAGTACAAACTCGTAGGATTTACGTCAACAATCACAGTGTCTGTG
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