mRNA_H-canaliculatus_M_contigs8909.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8909.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8909.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Match: LHCP (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG14_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.400e-29
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 183
            GGL+E+YSPGDLGFDPL +KPK +A L  MQTKELNNGRLAMIGIAGMLVQELVNPA+ILG
Sbjct:   23 GGLREEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 83
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BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.140e-27
Identity = 50/61 (81.97%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 183
            GGLKEDY PGDLGFDPL +KP  EA L  M+TKELNNGRLAMIGIAGML QELVNPA ILG
Sbjct:   23 GGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPAGILG 83
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.850e-27
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 183
            GGL+++YSPGDLGFDPL +KPK +A L  MQTKELNNGRLAMIGIAGMLVQELVNPA+ILG
Sbjct:  161 GGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Match: LHCP (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.150e-27
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 183
            GGLKEDY PGDLGFDPL +KP  EA L  M+TKELNNGRLAMIGIAGML QELVNPA+ILG
Sbjct:   71 GGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 131
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 7.860e-27
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 183
            GGLKEDY PGDLGFDPL +KP+ EA L  M+TKELNNGRLAMIGIAGMLVQEL+NPA+ILG
Sbjct:  160 GGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Match: LHCP (protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.600e-26
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 183
            GGLKEDY PGDLGFDPL +KP  EA L  M+TKELNNGRLAMIGIAGML QELVNPA+ILG
Sbjct:  132 GGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.500e-26
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 183
            GGLKEDY PGDLGFDPL +KP  EA L  M+TKELNNGRLAMIGIAGML QELVNPA+ILG
Sbjct:  136 GGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Match: LHCP (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.390e-26
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANIL 180
            GGL++DYS GDLGFDPL +KPK +A L TMQTKELNNGRLAMIGIAGMLVQELVN  NIL
Sbjct:   53 GGLRDDYSLGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNSINIL 112
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Match: LHCP (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.410e-25
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANILG 183
            GGLKEDY PGDLGFDPL +KP   A L  M+TKELNNGRLAMIGIAGM+ QELVNPA+ILG
Sbjct:   95 GGLKEDYMPGDLGFDPLNLKPDDVAALDVMKTKELNNGRLAMIGIAGMMAQELVNPADILG 155
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.560e-25
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELVNPANIL 180
            GGL+++YSPGDLGFDPL +KP  +  L TMQTKELNNGRLAMIGIAG LVQELVNP NIL
Sbjct:  115 GGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8909.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
LHCP2.400e-2983.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.140e-2781.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Light2.850e-2781.97harvesting complex protein n=1 Tax=Ectocarpus sili... [more]
LHCP3.150e-2781.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Light7.860e-2781.97harvesting complex protein n=2 Tax=Ectocarpus TaxI... [more]
LHCP1.600e-2681.97protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Light2.500e-2681.97harvesting complex protein n=1 Tax=Ectocarpus sili... [more]
LHCP3.390e-2681.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LHCP1.410e-2578.69protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Light2.560e-2578.33harvesting complex protein n=1 Tax=Ectocarpus sili... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8909contigH-canaliculatus_M_contigs8909:35..220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G7S1
PFAMsChloroa_b-bind
Model size186
Max annot lvl2759|Eukaryota
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.67e-28
EggNOG OGs2BEWM@1|root,2S15M@2759|Eukaryota
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-06_000600.1
DescriptionChlorophyll A-B binding protein
Cds size186
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854179.1611133-CDS-H-canaliculatus_M_contigs8909:34..2201696854179.1611133-CDS-H-canaliculatus_M_contigs8909:34..220Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8909 35..220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8909.1.1prot_H-canaliculatus_M_contigs8909.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8909 35..220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8909.1.1

>prot_H-canaliculatus_M_contigs8909.1.1 ID=prot_H-canaliculatus_M_contigs8909.1.1|Name=mRNA_H-canaliculatus_M_contigs8909.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=62bp
GGLKEDYSPGDLGFDPLGIKPKTEADLVTMQTKELNNGRLAMIGIAGMLV
QELVNPANILG*
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mRNA from alignment at H-canaliculatus_M_contigs8909:35..220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8909.1.1 ID=mRNA_H-canaliculatus_M_contigs8909.1.1|Name=mRNA_H-canaliculatus_M_contigs8909.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8909:35..220+ (Hapterophycus canaliculatus Oshoro7m male)
GGCGGCCTTAAGGAGGACTACAGCCCGGGAGACCTCGGCTTCGACCCCCT
CGGCATCAAGCCCAAGACCGAAGCCGACCTGGTGACGATGCAGACCAAGG
AGCTCAACAACGGCCGCCTGGCCATGATCGGCATCGCCGGCATGTTGGTG
CAGGAGCTTGTCAACCCGGCCAACATCCTGGGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8909:35..220+

>mRNA_H-canaliculatus_M_contigs8909.1.1 ID=mRNA_H-canaliculatus_M_contigs8909.1.1|Name=mRNA_H-canaliculatus_M_contigs8909.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8909:35..220+ (Hapterophycus canaliculatus Oshoro7m male)
GGCGGCCTTAAGGAGGACTACAGCCCGGGAGACCTCGGCTTCGACCCCCT
CGGCATCAAGCCCAAGACCGAAGCCGACCTGGTGACGATGCAGACCAAGG
AGCTCAACAACGGCCGCCTGGCCATGATCGGCATCGCCGGCATGTTGGTG
CAGGAGCTTGTCAACCCGGCCAACATCCTGGGCTGA
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