mRNA_H-canaliculatus_M_contigs8907.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs8907.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs8907.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAL2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.740e-26
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1

Query:    1 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 147
            SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE
Sbjct:   30 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 78

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Match: Midasin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.030e-24
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1

Query:    1 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 147
            SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE
Sbjct:  363 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 411

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0J5_THAPS)

HSP 1 Score: 94.4 bits (233), Expect = 2.430e-21
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1

Query:    1 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 147
            SAGKT++VEYLAAR+GHRCVRINNHEHTDIQEYTGSYAAD  GK++FQE
Sbjct:   63 SAGKTTLVEYLAARVGHRCVRINNHEHTDIQEYTGSYAADSKGKISFQE 111

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BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZUX5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.970e-21
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1

Query:    1 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 147
            SAGKT++VEY+AAR GHRCVRINNHEHTD+QEYTG YAAD  G L+FQ+
Sbjct:   14 SAGKTTLVEYMAARCGHRCVRINNHEHTDVQEYTGFYAADSKGSLSFQD 62

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BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Match: Midasin (n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VEM6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.590e-20
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 1

Query:    1 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 147
            SAGKT++VE+LAAR GHRCVRINNHEHTD+QEYTGSYA+D NGKL F+E
Sbjct: 1232 SAGKTTMVEFLAARCGHRCVRINNHEHTDVQEYTGSYASDPNGKLCFRE 1280

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Match: Midasin (n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEP4_THAOC)

HSP 1 Score: 90.5 bits (223), Expect = 5.590e-20
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1

Query:    1 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 147
            SAGKT++VEYLA R GH+CVRINNHEHTDIQEYTGSYAAD  GK++FQE
Sbjct: 1327 SAGKTTLVEYLARRCGHKCVRINNHEHTDIQEYTGSYAADSKGKISFQE 1375

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8L4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.950e-19
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 1

Query:    1 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 147
            SAGKT+++EYLAARLGHRCVRINNHEHTD+QEYTG YAAD  G+L F++
Sbjct:  299 SAGKTTLIEYLAARLGHRCVRINNHEHTDVQEYTGCYAADSEGRLKFRD 347

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BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z947_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.630e-19
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1

Query:    1 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 147
            SAGKT++VEYLAAR GHRCVRINNHEHTDIQEYTG+Y AD +GKL F E
Sbjct:  791 SAGKTTLVEYLAARCGHRCVRINNHEHTDIQEYTGTYTADESGKLVFVE 839

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Match: Midasin (n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0F1_GLOUD)

HSP 1 Score: 87.0 bits (214), Expect = 9.230e-19
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1

Query:    1 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 147
            SAGKTS++ YLAAR+G +CVRINNHEHTDIQEY GSY +D NGKLAF+E
Sbjct: 1145 SAGKTSLISYLAARIGQKCVRINNHEHTDIQEYLGSYVSDSNGKLAFKE 1193

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNU7_PYTOL)

HSP 1 Score: 86.7 bits (213), Expect = 1.260e-18
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1

Query:    1 SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE 147
            SAGKTS++ YLAAR+G +CVRINNHEHTDIQEY GSY +D NGKLAF+E
Sbjct: 1159 SAGKTSLISYLAARVGQKCVRINNHEHTDIQEYLGSYVSDSNGKLAFKE 1207

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs8907.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	8.740e-26	100.00	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Midasin	1.030e-24	100.00	n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7...	[more]
Uncharacterized	2.430e-21	85.71	protein (Fragment) n=1 Tax=Thalassiosira pseudonan...	[more]
Hypothetical	2.970e-21	77.55	protein (Fragment) n=1 Tax=Ditylum brightwellii Ta...	[more]
Midasin	5.590e-20	81.63	n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A...	[more]
Midasin	5.590e-20	81.63	n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=...	[more]
Hypothetical	1.950e-19	77.55	protein (Fragment) n=1 Tax=Odontella aurita TaxID=...	[more]
P-loop	3.630e-19	81.63	containing nucleoside triphosphate hydrolase prote...	[more]
Midasin	9.230e-19	77.55	n=1 Tax=Globisporangium ultimum (strain ATCC 20000...	[more]
Uncharacterized	1.260e-18	77.55	protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs8907	contig	H-canaliculatus_M_contigs8907:3267..3413 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D7FL28
PFAMs	AAA_5
Model size	147
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14572
KEGG Pathway	ko03008,map03008
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Evalue	1.69e-25
EggNOG OGs	COG5271@1\|root,KOG1808@2759\|Eukaryota
Description	Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
Cds size	147
COG category	M
BRITE	ko00000,ko00001,ko03009

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854179.0664668-CDS-H-canaliculatus_M_contigs8907:3266..3413	1696854179.0664668-CDS-H-canaliculatus_M_contigs8907:3266..3413	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs8907 3267..3413 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs8907.1.1	prot_H-canaliculatus_M_contigs8907.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs8907 3267..3413 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs8907:3267..3413-
coding sequence from alignment at H-canaliculatus_M_contigs8907:3267..3413-

protein sequence of mRNA_H-canaliculatus_M_contigs8907.1.1

>prot_H-canaliculatus_M_contigs8907.1.1 ID=prot_H-canaliculatus_M_contigs8907.1.1|Name=mRNA_H-canaliculatus_M_contigs8907.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=49bp
SAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQE

mRNA from alignment at H-canaliculatus_M_contigs8907:3267..3413-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs8907.1.1 ID=mRNA_H-canaliculatus_M_contigs8907.1.1|Name=mRNA_H-canaliculatus_M_contigs8907.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=147bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8907:3267..3413- (Hapterophycus canaliculatus Oshoro7m male)
AGTGCGGGCAAGACCAGCATTGTAGAATACCTTGCGGCGCGCCTCGGCCA
CCGATGCGTGCGCATCAACAACCACGAGCACACGGACATCCAGGAGTACA
CCGGCAGCTACGCCGCAGACGGCAACGGAAAGCTGGCGTTCCAAGAG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8907:3267..3413-

>mRNA_H-canaliculatus_M_contigs8907.1.1 ID=mRNA_H-canaliculatus_M_contigs8907.1.1|Name=mRNA_H-canaliculatus_M_contigs8907.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=147bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8907:3267..3413- (Hapterophycus canaliculatus Oshoro7m male)
AGTGCGGGCAAGACCAGCATTGTAGAATACCTTGCGGCGCGCCTCGGCCA
CCGATGCGTGCGCATCAACAACCACGAGCACACGGACATCCAGGAGTACA
CCGGCAGCTACGCCGCAGACGGCAACGGAAAGCTGGCGTTCCAAGAG