mRNA_H-canaliculatus_M_contigs8902.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8902.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8902.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8902.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N3_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.560e-12
Identity = 75/125 (60.00%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:    1 MRRKQ--STGPGAVSNHDVYDTDPPRAGRLLGYPAAAGSTPLAGTGQAFLPYASLPGTTSRGMSFPGAAGSAGXXXXXXXXXXXXXXXXXXXXXXVAGGDVDMRIRES-QKSGKKGV-FKDWKRR 363
            MRRKQ  S+G GAVSNHD+YDTDPPR GRLLG PA     P  G        A+      RGMSFPGA     XXXXXXXXXXXXXXXXXXXXXX        R+R+S QK GK+G  F+DWKRR
Sbjct:    1 MRRKQQSSSGAGAVSNHDLYDTDPPRPGRLLGMPAPV-PAPQGG--------AAAFNAAGRGMSFPGATXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXRLRDSSQKGGKRGGGFRDWKRR 111
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BLAST of mRNA_H-canaliculatus_M_contigs8902.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 9.040e-10
Identity = 38/72 (52.78%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:    1 MRRKQ--STGPGAVSNHDVYDTDPPRAGRLLGYPAAAGSTPLAGTGQAFLPYASLPGTTSRGMSFPGAAGSA 210
            MRRKQ  S+G GAVSNHD+YD DPPR GRLLG  A   S P  G        A+     SRG+SFPGA  ++
Sbjct:    1 MRRKQQSSSGAGAVSNHDLYDADPPRPGRLLGMSAPV-SAPQGG--------AAAFNAASRGLSFPGATAAS 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8902.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.560e-1260.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.040e-1052.78protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8902contigH-canaliculatus_M_contigs8902:3321..3686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006150.1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854178.7948036-CDS-H-canaliculatus_M_contigs8902:3320..36861696854178.7948036-CDS-H-canaliculatus_M_contigs8902:3320..3686Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8902 3321..3686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8902.1.1prot_H-canaliculatus_M_contigs8902.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8902 3321..3686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8902.1.1

>prot_H-canaliculatus_M_contigs8902.1.1 ID=prot_H-canaliculatus_M_contigs8902.1.1|Name=mRNA_H-canaliculatus_M_contigs8902.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=122bp
MRRKQSTGPGAVSNHDVYDTDPPRAGRLLGYPAAAGSTPLAGTGQAFLPY
ASLPGTTSRGMSFPGAAGSAGPGGGASAGGAGGIGSSGAGGGGVAGGDVD
MRIRESQKSGKKGVFKDWKRR*
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mRNA from alignment at H-canaliculatus_M_contigs8902:3321..3686-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8902.1.1 ID=mRNA_H-canaliculatus_M_contigs8902.1.1|Name=mRNA_H-canaliculatus_M_contigs8902.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=366bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8902:3321..3686- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGACGGAAGCAGTCCACGGGCCCAGGAGCTGTGAGCAATCACGACGT
GTACGACACCGACCCACCTCGAGCAGGGCGCCTGCTGGGATACCCAGCAG
CAGCGGGTTCGACCCCACTCGCAGGGACGGGGCAAGCGTTCTTGCCTTAC
GCGAGCCTCCCGGGCACCACCAGCAGGGGCATGAGCTTCCCGGGTGCGGC
GGGGTCGGCGGGGCCGGGGGGCGGGGCCAGTGCGGGCGGAGCGGGAGGGA
TCGGAAGCAGCGGCGCCGGGGGTGGCGGAGTTGCGGGCGGAGACGTGGAT
ATGAGGATTCGAGAGAGCCAAAAGAGTGGGAAGAAGGGTGTTTTCAAGGA
CTGGAAGCGACGGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8902:3321..3686-

>mRNA_H-canaliculatus_M_contigs8902.1.1 ID=mRNA_H-canaliculatus_M_contigs8902.1.1|Name=mRNA_H-canaliculatus_M_contigs8902.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8902:3321..3686- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGACGGAAGCAGTCCACGGGCCCAGGAGCTGTGAGCAATCACGACGT
GTACGACACCGACCCACCTCGAGCAGGGCGCCTGCTGGGATACCCAGCAG
CAGCGGGTTCGACCCCACTCGCAGGGACGGGGCAAGCGTTCTTGCCTTAC
GCGAGCCTCCCGGGCACCACCAGCAGGGGCATGAGCTTCCCGGGTGCGGC
GGGGTCGGCGGGGCCGGGGGGCGGGGCCAGTGCGGGCGGAGCGGGAGGGA
TCGGAAGCAGCGGCGCCGGGGGTGGCGGAGTTGCGGGCGGAGACGTGGAT
ATGAGGATTCGAGAGAGCCAAAAGAGTGGGAAGAAGGGTGTTTTCAAGGA
CTGGAAGCGACGGTAA
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