mRNA_H-canaliculatus_M_contigs8882.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8882.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8882.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8882.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.150e-50
Identity = 96/221 (43.44%), Postives = 140/221 (63.35%), Query Frame = 1
Query:   37 VMTKTAFSTKMRLVFIFGLEGTGHHYIMEASDRIFQERKDEPQIQKMGLKRKNYFLTIAMRESAAGFGHARKSARREMRDLARRSEGISFPANVQFLN-GHSVPSGIGSQKVMEYADPRLMAEAAEAEGVDFRVLYLKRSAKEILMANTVHREFQNNLSNPHDTNKQKK-FMEYVRVLFTDAAVVQSFLAELDPAFVICHDWNLFGDPDQAQKIADAIAPN 693
            ++ KT  S   RLVF+ GLEGTGHHY+M A+  +F +  + P+    G +   Y+  + M ++   F  +  +A   MR LA  +  +S P  ++F +   S P   G  KVM+Y D  ++AE AE  G+DFRVLYL+RSAKE+++ANTVHR+F   + +  +T  Q++ F++Y+RVLFTD AV+ SFL E+ P FV+CHDW+  GD +QA  IA  I+PN
Sbjct:  138 ILPKTHVSDVFRLVFVAGLEGTGHHYVMWANASLFGDNMNLPRRYGHGKEIYEYYAPLKMGQNVKQFTMSSHNAVENMRRLAEWAANLSSPGALEFFSIPCSYPVNSGPLKVMQYMDLGMIAETAEGAGIDFRVLYLRRSAKEVVIANTVHRKFHLLMGDDEETVGQERLFLKYMRVLFTDIAVLHSFLGEIGPEFVVCHDWDRLGDKEQASTIASFISPN 358          
BLAST of mRNA_H-canaliculatus_M_contigs8882.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.870e-29
Identity = 81/229 (35.37%), Postives = 120/229 (52.40%), Query Frame = 1
Query:   37 VMTKTAFSTKMRLVFIFGLEGTGHHYIMEASDRIFQERKDEPQIQKMGLKRKNYFLTIAMRESAAGFGHARKSARREMRDLAR---------RSEGISFPA-NVQFLNGHSVPSGIGSQKVMEYADPRLMAEAAEAEGVDFRVLYLKRSAKEILMANTVHREFQNNLSNPHDTNKQKKFMEYVRVLFTDAAVVQSFLAELDPAFVICHDWNLFGDPDQAQKIADAIAPN 693
            V+ K A S++MR+VF+ GLEGTGHHY+ +  + +   +KD+ +  K+ +  K  +  +++ +S   +  ARK  R EM  LA           S  +SF A   Q     S P+  G +K ++Y D RL+AE AE  GVD R +YL RSA +IL +++ H             N    F+   R+L  + AVV S   ELDP+F  C  +    DP QA ++A  +APN
Sbjct:   98 VVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVC--KKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHH------------NYGGSFIRESRILLNNLAVVHSTFQELDPSFTTCFRYGEMADPAQAARVAGFLAPN 312          
BLAST of mRNA_H-canaliculatus_M_contigs8882.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.860e-27
Identity = 61/118 (51.69%), Postives = 84/118 (71.19%), Query Frame = 1
Query:  196 YFLTIAMRESAAGFGHARKSARREMRDLARRSEGISFPANVQFLNGH-SVPSGIGSQKVMEYADPRLMAEAAEAEGVDFRVLYLKRSAKEILMANTVHREFQNNLSNPHDTNKQKKFM 546
            +F++  MR S+  F  + +  R +MRDLA+R++ +  P  VQ + G  S P G G QKV +Y D RL+AEAAEAEGVD RVLY+KRSAKE+L+A+TVHR FQN L +  D++ +K+FM
Sbjct:   21 FFISTTMRTSSTAFTASWQQGRDQMRDLAQRAQTLPTPGTVQLITGGISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGFQNFLGDI-DSSAEKRFM 137          
BLAST of mRNA_H-canaliculatus_M_contigs8882.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.520e-23
Identity = 75/234 (32.05%), Postives = 113/234 (48.29%), Query Frame = 1
Query:   37 VMTKTAFSTKMRLVFIFGLEGTGHHYIMEASDRIFQERKDEPQIQKMGLKRKNYFLTIAMRESAAGFGHARKSARREMRDLARRSEGISFPAN---------VQFLNGHS------VPSGIGSQKVMEYADPRLMAEAAEAEGVDFRVLYLKRSAKEILMANTVHREFQNNLSNPHDTNKQKKFMEYVRVLFTDAAVVQSFLAELDPAFVICHDWNLFGDPDQAQKIADAIAPN 693
            V+ K   S+++R++F+ GLEGTGHHY +   D         P      +  K  + ++A   +   +  AR+  RRE+ +LA      ++PA           QF+   S       P+  G+ K ++Y D RL+AE AE  GVD R +YL RSA+ IL+++T H  +               FM   R L  +AAVV+S   EL P F  C  +    DP+Q  ++A  IAP+
Sbjct:   57 VVEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAA-VPCANACPIA-KALYPSLATPSTKQDYERARRELRRELENLA------AYPAEFMTEGQAAIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGT------------FMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQTHRVARFIAPD 270          
BLAST of mRNA_H-canaliculatus_M_contigs8882.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.480e-14
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1
Query:  529 KQKKFMEYVRVLFTDAAVVQSFLAELDPAFVICHDWNLFGDPDQAQKIADAIAPN 693
            +++ F+EY+RVLFTD AV+QSFL+E+ P F++CHDW+  GD +QA  IA  IAPN
Sbjct:   10 EERLFLEYMRVLFTDIAVLQSFLSEIGPEFIVCHDWDRLGDKEQASTIAHFIAPN 64          
BLAST of mRNA_H-canaliculatus_M_contigs8882.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A0K6_9DINO)

HSP 1 Score: 79.0 bits (193), Expect = 1.690e-13
Identity = 65/222 (29.28%), Postives = 102/222 (45.95%), Query Frame = 1
Query:   37 VMTKTAFSTKMRLVFIFGLEGTGHHYIMEASDRIFQERKDEPQIQ----------KMGL---KRKNYFLTIAMRESAA--------GFGHARKSARREMRDLARRSEGISFPANVQFLNGHSVPSGIGSQKVMEYADPRLMAEAAEAEGVDFRVLYLKRSAKEILMANTVHREFQNNLSNPHDTNKQKKFMEYVRVLFTDAAVVQSFLAELDPAFVICHDWN 639
            ++ K     + RL+F+ GLEG+GHH  +    R  + R+    ++          + GL   + K Y    A +   A        GF  A    R  +R L+RR+      A++      S P+  G  K+ +  D RL+AE AE EGVDFR+L L R A  +L + T+HR F          N +   +E+      +A  + + L  LDPAFV+C +++
Sbjct:   98 LLPKRVHGARWRLLFVAGLEGSGHHLWIPLLKRCVKARRCAADVELGRRLWTDRTRKGLWSFETKLYAPRAAKKWEYAPPGAKWLSGFRRAEGEVRTALRRLSRRNATSPLLASLGGCGMMSYPNFPGKLKMFQTPDVRLLAELAEDEGVDFRILVLHRPAAAVLRSTTIHRHF-------GSWNTEAVVLEH------NAQTLLAQLQSLDPAFVLCTEYD 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8882.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized2.150e-5043.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.870e-2935.37protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.860e-2751.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.520e-2332.05protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3... [more]
Uncharacterized1.480e-1458.18protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.690e-1329.28protein (Fragment) n=1 Tax=Pyrodinium bahamense Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8882contigH-canaliculatus_M_contigs8882:175..1663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009035729.1
PFAMsPP2C,Pkinase
Model size693
Max annot lvl2759|Eukaryota
KEGG koko:K10147,ko:K17506
KEGG Pathwayko04115,map04115
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.76e-09
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
Cds size693
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854178.358168-CDS-H-canaliculatus_M_contigs8882:174..6741696854178.358168-CDS-H-canaliculatus_M_contigs8882:174..674Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8882 175..674 +
1696854178.3694234-CDS-H-canaliculatus_M_contigs8882:927..9751696854178.3694234-CDS-H-canaliculatus_M_contigs8882:927..975Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8882 928..975 +
1696854178.3793623-CDS-H-canaliculatus_M_contigs8882:1518..16631696854178.3793623-CDS-H-canaliculatus_M_contigs8882:1518..1663Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8882 1519..1663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8882.1.1prot_H-canaliculatus_M_contigs8882.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8882 175..1663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8882.1.1

>prot_H-canaliculatus_M_contigs8882.1.1 ID=prot_H-canaliculatus_M_contigs8882.1.1|Name=mRNA_H-canaliculatus_M_contigs8882.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=231bp
MANSSSSHGGGRVMTKTAFSTKMRLVFIFGLEGTGHHYIMEASDRIFQER
KDEPQIQKMGLKRKNYFLTIAMRESAAGFGHARKSARREMRDLARRSEGI
SFPANVQFLNGHSVPSGIGSQKVMEYADPRLMAEAAEAEGVDFRVLYLKR
SAKEILMANTVHREFQNNLSNPHDTNKQKKFMEYVRVLFTDAAVVQSFLA
ELDPAFVICHDWNLFGDPDQAQKIADAIAPN
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mRNA from alignment at H-canaliculatus_M_contigs8882:175..1663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8882.1.1 ID=mRNA_H-canaliculatus_M_contigs8882.1.1|Name=mRNA_H-canaliculatus_M_contigs8882.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1489bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8882:175..1663+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCAAACAGTTCGTCGTCGCACGGTGGTGGCAGGGTCATGACAAAGAC TGCATTCAGTACCAAGATGCGGTTGGTCTTCATTTTTGGGTTGGAGGGTA CGGGGCATCACTACATCATGGAGGCAAGCGATCGCATCTTCCAGGAACGC AAGGACGAGCCCCAGATTCAGAAGATGGGTCTGAAGAGAAAGAACTATTT CCTCACAATCGCCATGAGGGAAAGCGCCGCCGGTTTTGGTCACGCACGGA AAAGCGCCCGAAGAGAAATGAGGGATCTCGCGCGGCGATCCGAAGGGATT TCGTTTCCTGCCAACGTGCAATTTCTCAATGGGCACTCCGTTCCAAGTGG GATTGGGAGTCAGAAGGTGATGGAGTACGCGGACCCACGGCTGATGGCTG AGGCGGCAGAGGCGGAGGGTGTCGACTTCCGCGTCCTTTACTTGAAGCGA TCGGCGAAGGAGATTCTTATGGCGAACACGGTTCATCGCGAGTTCCAAAA GTGTGTGCTAGCGCGATACGGGTGTAATGTAGCGGAAATAGCAAGATGCT TGCATCCATTGGAGGCCGAGATTCAGGAGCTTTCTTCGCTGCCGCCCAAG GAAACCTCATGATGTTTACCTCGCCTGTCCGATGTAAGGTCAAGCCGTCC CTTCTCGACTGACCCAACGCCGCATCTGCCCCTTTTTCTGTACCGACTGT CTATCTTCTTCGTCCGATGACCATGGCCTACCCGCATGTTCTCCTTGCTG CAGCAACCTGAGCAACCCTCATGATACCAATAAGCAGAAGAAGTTCATGG AGTGAGTATCGGGTTCTGAATCTTCATCAAAACTCTGGCTTCCGAACCCT TTTCTTGTTTGAAACAGTGTCAACACTAAGGAAGTCTCTAACGTTGTACC AAGACCAGCAACGCCTCGTAAGCCACGAGTCCGGTTGCTAGCATTTTTTT TACTAAGACGTCGCTCTTAGCCCAATTGCATCGCAGCCGCGCGACGCTGA GCCTCCTTTTGCGGACGGCAGGTATCTGAGAGGTGGGCCTCAAACGTGAC CTTTGTTGTGCACTGCCCCGAGTTCGAGGAAAAGGTCGGAGGTCGCTGAG ATCGTAACGTAACACCGCAGGCACATGATGCGGAACGCACATGTTGAGCG CCAGAACCCTAAAAATGCTGCCTGCGGCGGAAAAACGATGGACTCAGTAA CCAAAACGGGTGGTACAACTCCATCAGGGACAAAATCTTGAACACGTGGA ACACACGGAACACCTCCTGACTTCCACTACCTGTACCGTAAAATTGAAAC CGTGCGTCGCATGATCATTTTCCCCCGTAAACACTTCCTTCTAGGTACGT ACGGGTTCTTTTCACGGATGCTGCCGTCGTGCAATCCTTCTTGGCGGAGC TTGATCCGGCTTTCGTGATCTGTCACGACTGGAACTTATTTGGAGATCCT GACCAAGCGCAAAAGATTGCCGACGCTATCGCCCCGAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8882:175..1663+

>mRNA_H-canaliculatus_M_contigs8882.1.1 ID=mRNA_H-canaliculatus_M_contigs8882.1.1|Name=mRNA_H-canaliculatus_M_contigs8882.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=693bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8882:175..1663+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCAAACAGTTCGTCGTCGCACGGTGGTGGCAGGGTCATGACAAAGAC
TGCATTCAGTACCAAGATGCGGTTGGTCTTCATTTTTGGGTTGGAGGGTA
CGGGGCATCACTACATCATGGAGGCAAGCGATCGCATCTTCCAGGAACGC
AAGGACGAGCCCCAGATTCAGAAGATGGGTCTGAAGAGAAAGAACTATTT
CCTCACAATCGCCATGAGGGAAAGCGCCGCCGGTTTTGGTCACGCACGGA
AAAGCGCCCGAAGAGAAATGAGGGATCTCGCGCGGCGATCCGAAGGGATT
TCGTTTCCTGCCAACGTGCAATTTCTCAATGGGCACTCCGTTCCAAGTGG
GATTGGGAGTCAGAAGGTGATGGAGTACGCGGACCCACGGCTGATGGCTG
AGGCGGCAGAGGCGGAGGGTGTCGACTTCCGCGTCCTTTACTTGAAGCGA
TCGGCGAAGGAGATTCTTATGGCGAACACGGTTCATCGCGAGTTCCAAAA
CAACCTGAGCAACCCTCATGATACCAATAAGCAGAAGAAGTTCATGGAGT
ACGTACGGGTTCTTTTCACGGATGCTGCCGTCGTGCAATCCTTCTTGGCG
GAGCTTGATCCGGCTTTCGTGATCTGTCACGACTGGAACTTATTTGGAGA
TCCTGACCAAGCGCAAAAGATTGCCGACGCTATCGCCCCGAAC
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