mRNA_H-canaliculatus_M_contigs8881.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8881.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8881.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS5_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.170e-23
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 SSWRTLSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMDKPYEYVMVDSPRLAKVSADGSPFAEYIDGGK 243
            ++WRTL+F+EV  L++  +   + F +S+K   F AVFWESAPVTRTT DKPYEYV+VDSPRLA V+ADG PFAE+I   K
Sbjct:  105 ATWRTLNFREVADLFK--KGLPDCFLESMKEANFEAVFWESAPVTRTTTDKPYEYVLVDSPRLAAVTADGRPFAEHIASRK 183          
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L146_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.320e-23
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 SSWRTLSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMDKPYEYVMVDSPRLAKVSADGSPFAEYI 231
            ++WRTL+F+EV  L++      + F +S+K   F AVFWES PVTRTT DKPYEYV+VDSPRLA V+ADGSPFAE+I
Sbjct:  102 ATWRTLNFREVAELFKQG--LPDCFLESMKETNFEAVFWESVPVTRTTTDKPYEYVLVDSPRLAAVTADGSPFAEHI 176          
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Stanieria sp. NIES-3757 TaxID=1807358 RepID=A0A140KBE3_9CYAN)

HSP 1 Score: 78.2 bits (191), Expect = 1.590e-15
Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 1
Query:    1 SSWRTLSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMDKPYEYVMVDSPRLAKVSADGSPFAEYIDGGKHASWQV----QVSLFSRSCPKNCSAGLPYLPASFSCEAPQS 354
            S  R +++ EV+ LW+ +  F   F   + + PF+A FWE+ P+T +T+++ +E+V+VDSP+L KV  + S F EY +             Q +L    CP   S+  P+L A+F  EAP+S
Sbjct:   21 SQTRRVTYSEVIQLWQQAETFRSFFISLLASAPFSAYFWETPPITHSTVNQEFEFVLVDSPQLTKVEPELSSFKEYFESTSEDVITFPNLNQDALLVVPCPIAKSSAYPHL-ATFVREAPKS 141          
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Match: hypothetical (protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI0005601DF8)

HSP 1 Score: 75.5 bits (184), Expect = 1.800e-14
Identity = 29/78 (37.18%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   10 RTLSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMDKPYEYVMVDSPRLAKVSADGSPFAEYIDGGK 243
            + L++ EV+ LW+N+  F + F+  +   PFAA FWE+ PVT++T+++ +E+V+ +SP+LA+++ D S F  Y    +
Sbjct:   24 KQLAYSEVIELWQNNSSFRDFFSSLLANAPFAAYFWETLPVTKSTVERKFEFVLANSPQLAQINPDPSDFERYFSSAE 101          
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thiogranum longum TaxID=1537524 RepID=A0A4R1HCI6_9GAMM)

HSP 1 Score: 75.5 bits (184), Expect = 1.930e-14
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   16 LSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMDKPYEYVMVDSPRLAKVSADGSPFAEYID 234
            LS+ +V+  W N+  FA  F+  + A  F A  WE+ P+TR ++ +P+EYV+VDSPRLA+ S D + FAE+ +
Sbjct:   27 LSYAQVIEHWGNNTSFALFFSKQLAASAFEAFLWETPPITRDSLQRPFEYVLVDSPRLARASPDSTAFAEHFE 99          
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0NA86_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-13
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    4 SWRTLSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMDKPYEYVMVDSPRLAKVSADGSPFAEY 228
            S+R LS +EV+  W   R+F + + D + A PF A FWE  P+ R+ +D+P+E+V+V+S  LA+VS  G  F  Y
Sbjct:   21 SYRLLSVQEVIDAWIADREFRKFYNDLLAAAPFPAFFWELPPIVRSDLDRPFEFVLVNSNALARVSPMGQAFRSY 95          
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0VAL2_9ZZZZ)

HSP 1 Score: 70.1 bits (170), Expect = 1.930e-12
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   10 RTLSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMDKPYEYVMVDSPRLAKVSADGSPFAEY 228
            R   + +++  W+N R F   F   +   PF A FWE+ PVTR ++ +P+E+V+VD+P+LA+V A+   FA Y
Sbjct:   24 RPFLYTQIIQKWQNDRAFRTFFIGLLADAPFDAYFWETPPVTRESLQRPFEFVLVDAPQLAQVQAEPRAFASY 96          
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846AAJ9_9CYAN)

HSP 1 Score: 70.1 bits (170), Expect = 2.570e-12
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   16 LSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMDKPYEYVMVDSPRLAKVSADGSPFAEYIDGGKHASWQVQVSLF 276
            L + +V++ W+ + +F ++FT ++  +P+ A FWE+ P++  T+ +P+E  ++DSP+LAKV+AD   FA+Y+    HA    +V  F
Sbjct:   37 LRWCDVLAGWQQTAEFRQVFTQALAHMPYEAFFWETPPLSEATLQQPFECCLIDSPQLAKVTADPQAFADYL----HAERCDEVQAF 119          
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1XBL4_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 5.520e-12
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   16 LSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMDKPYEYVMVDSPRLAKVSADGSPFAEY 228
            LSFKEV+  W+   +F   ++  +   PF A FWE  P+T   + +PYE +++DSP LA++ AD SPF  +
Sbjct:   25 LSFKEVIRFWQEWPEFRSWYSYQLAQAPFPAFFWEHPPLTVDRLSQPYEVILLDSPALARIQADPSPFLAF 95          
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0Z9J9_9CHLR)

HSP 1 Score: 68.6 bits (166), Expect = 7.870e-12
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   10 RTLSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMDKPYEYVMVDSPRLAKVSADGSPFAEY 228
            R  +++E V  W++   F   F + +   PFAA FWE+ P+T+ T+ +P+E+V+V++P+LAKV A    FA Y
Sbjct:   23 RPFTYQETVQKWQSDEPFRIFFINLLADAPFAAYFWETPPITKETLIRPFEFVLVNAPQLAKVPAQRHAFASY 95          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8881.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.170e-2360.49protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.320e-2362.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.590e-1535.25protein n=1 Tax=Stanieria sp. NIES-3757 TaxID=1807... [more]
hypothetical1.800e-1437.18protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 ... [more]
Uncharacterized1.930e-1443.84protein n=1 Tax=Thiogranum longum TaxID=1537524 Re... [more]
Uncharacterized1.300e-1342.67protein n=1 Tax=Flavilitoribacter nigricans DSM 23... [more]
Uncharacterized1.930e-1239.73protein n=1 Tax=hydrothermal vent metagenome TaxID... [more]
Uncharacterized2.570e-1235.63protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607... [more]
Uncharacterized5.520e-1240.85protein n=1 Tax=Bacteroidetes bacterium TaxID=1898... [more]
Uncharacterized7.870e-1239.73protein n=1 Tax=Anaerolineaceae bacterium TaxID=20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8881contigH-canaliculatus_M_contigs8881:820..1901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJS5
Model size354
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.92e-24
EggNOG OGs2B3PJ@1|root,2S91Y@2759|Eukaryota
Ec32 ortholog descriptionSecreted protein similar to EsV-1-207
Ec32 orthologEc-12_003090.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854178.315208-CDS-H-canaliculatus_M_contigs8881:819..10261696854178.315208-CDS-H-canaliculatus_M_contigs8881:819..1026Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8881 820..1026 -
1696854178.3281362-CDS-H-canaliculatus_M_contigs8881:1754..19011696854178.3281362-CDS-H-canaliculatus_M_contigs8881:1754..1901Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8881 1755..1901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8881.1.1prot_H-canaliculatus_M_contigs8881.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8881 820..1901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8881.1.1

>prot_H-canaliculatus_M_contigs8881.1.1 ID=prot_H-canaliculatus_M_contigs8881.1.1|Name=mRNA_H-canaliculatus_M_contigs8881.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=118bp
SSWRTLSFKEVVSLWRNSRDFAEMFTDSVKAVPFAAVFWESAPVTRTTMD
KPYEYVMVDSPRLAKVSADGSPFAEYIDGGKHASWQVQVSLFSRSCPKNC
SAGLPYLPASFSCEAPQS
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mRNA from alignment at H-canaliculatus_M_contigs8881:820..1901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8881.1.1 ID=mRNA_H-canaliculatus_M_contigs8881.1.1|Name=mRNA_H-canaliculatus_M_contigs8881.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1082bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8881:820..1901- (Hapterophycus canaliculatus Oshoro7m male)
TCGTCGTGGCGTACTTTGAGCTTTAAGGAGGTGGTTTCACTGTGGAGAAA TAGCAGGGACTTTGCGGAAATGTTCACAGATTCAGTCAAGGCGGTTCCCT TCGCAGCCGTCTTCTGGGAATCAGCGCCCGTCACCAGGACCACGATGGTG AGAAGTAACAAAGTGAGGCAAGGAGGAGAAAACCGGCAGTGATTTCGACG GGTCTCATGCGTGAATAGGTTAGCTCTGCGCGACACACCAGCGAAGGCGA CATGATGGTGTCATGGTGTCATCGTTTCGCATGAGTCGCTCGCGCACGGT TGGATGATGTCCAAGCGGCAATCGTCCCGCAACAAACTAACTCCAGGGGT TCGGTTCCAACCGTTGTTTCGAGTACGATAGGTGACGACCTCCGCCGCAG GCAGCCTGTACTGTGTATGATCCGTTGTGCCACCATGATATTCTTGAAAA GCACCGCAAGTCCTTGACCACGGGGTAGGAAGGATAGGCTTCCGCCGCAC CAGCATTTTGATAGTTGTCTCGGTCGCACGTGTATCGCACCCACACAGCG TGAACGTGCTTGAAGGATCCTAGCCTACGATCCATTTCCAACGCGCGGGG TCGTTTCAGCCGTATCGGCACTATCTCGCGAAAAAAAAGTTCTGGATGAT CGATCATGACTTGTTGTTGGCTATAGGATGTTCTTCATCGCGCATTTTAG CAGAACCCCGCACCACAGCGTTTGAAACACTTTGAAAACCCTTTCATACA ACAACGCAGAAATTAGGCACACTGCTGTGTCCCATCCCCTCGTAGCAGCT CAACCTTACTCGCTTCTCTTTCGCTCCTGATTCCCGTTTCTGTATTTCCC TTCCTCCCTCTACTGCCATCGGCAGGATAAGCCGTACGAGTACGTGATGG TGGACTCTCCAAGGTTGGCAAAGGTTTCTGCAGACGGAAGTCCCTTCGCC GAGTATATTGACGGAGGTAAGCACGCCAGTTGGCAAGTTCAGGTATCTCT TTTCTCAAGGTCATGTCCGAAAAATTGTTCAGCGGGACTACCGTATCTAC CCGCCTCGTTCAGTTGCGAAGCCCCTCAATCT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8881:820..1901-

>mRNA_H-canaliculatus_M_contigs8881.1.1 ID=mRNA_H-canaliculatus_M_contigs8881.1.1|Name=mRNA_H-canaliculatus_M_contigs8881.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=354bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8881:820..1901- (Hapterophycus canaliculatus Oshoro7m male)
TCGTCGTGGCGTACTTTGAGCTTTAAGGAGGTGGTTTCACTGTGGAGAAA
TAGCAGGGACTTTGCGGAAATGTTCACAGATTCAGTCAAGGCGGTTCCCT
TCGCAGCCGTCTTCTGGGAATCAGCGCCCGTCACCAGGACCACGATGGAT
AAGCCGTACGAGTACGTGATGGTGGACTCTCCAAGGTTGGCAAAGGTTTC
TGCAGACGGAAGTCCCTTCGCCGAGTATATTGACGGAGGTAAGCACGCCA
GTTGGCAAGTTCAGGTATCTCTTTTCTCAAGGTCATGTCCGAAAAATTGT
TCAGCGGGACTACCGTATCTACCCGCCTCGTTCAGTTGCGAAGCCCCTCA
ATCT
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