mRNA_H-canaliculatus_M_contigs8880.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8880.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8880.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Match: PKD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M0_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.890e-16
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    1 VGELFTSSAPYDPLFWVIHPTADRFLAWRRKLAAEHPD 114
            VGEL+TSSAPYDPLFWVIHPTA+RFL+WRRKLA E PD
Sbjct:  525 VGELYTSSAPYDPLFWVIHPTAERFLSWRRKLATERPD 562          
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Match: TYR (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.810e-15
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    1 VGELFTSSAPYDPLFWVIHPTADRFLAWRRKLAAEHPD 114
            VGEL+TSSAPYDPLFWVIHPTA+RF+ WRRKL+ E PD
Sbjct:  476 VGELYTSSAPYDPLFWVIHPTAERFMGWRRKLSVEQPD 513          
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Match: PKD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 5.230e-15
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 VGELFTSSAPYDPLFWVIHPTADRFLAWRRKLAAEHPD 114
            VGEL+TSSAPYDPLFWVIHPTA+RF+ WRRKL  E PD
Sbjct:  530 VGELYTSSAPYDPLFWVIHPTAERFMGWRRKLGVEQPD 567          
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Match: PKD (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.820e-14
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    1 VGELFTSSAPYDPLFWVIHPTADRFLAWRRKLAAEHPD 114
            VGEL++SSAPYDPLFWVIHPTA+RF+ W+RKLA E PD
Sbjct:  548 VGELYSSSAPYDPLFWVIHPTAERFMGWKRKLARERPD 585          
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GFI3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.390e-12
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1
Query:    1 VGELFTSSAPYDPLFWVIHPTADRFLAWRRKLAAE 105
            VGE++TS+APYDPLFWV+HPTA+R L WRR L+A+
Sbjct:   42 VGEMYTSAAPYDPLFWVLHPTAERLLQWRRVLSAK 76          
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Match: Putative (scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J8_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 9.360e-12
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 VGELFTSSAPYDPLFWVIHPTADRFLAWRRKLAAE 105
            VGE++TS+APYDPLFWVIHPTADR LAWRR L  +
Sbjct:  521 VGEMYTSAAPYDPLFWVIHPTADRLLAWRRMLGRQ 555          
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Match: TYR (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKB4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.280e-11
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 VGELFTSSAPYDPLFWVIHPTADRFLAWRRKLAAE 105
            VGE+FTS+APYDP+FWV+HPTADR LAWRR L  +
Sbjct:  521 VGEMFTSAAPYDPVFWVVHPTADRLLAWRRMLGRQ 555          
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CY94_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.750e-9
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    4 GELFTSSAPYDPLFWVIHPTADRFLAWRRKLAA 102
            GE+FTS+APYDP FW IH TADRFL+W+R L A
Sbjct:   62 GEMFTSAAPYDPTFWPIHTTADRFLSWKRILRA 94          
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AXN9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.700e-8
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1
Query:    4 GELFTSSAPYDPLFWVIHPTADRFLAWRRKL 96
            GE++TS+APYDP FW+IHP+A+R L+WRR L
Sbjct:  281 GEMYTSAAPYDPTFWLIHPSAERMLSWRRML 311          
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSF3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.280e-8
Identity = 23/35 (65.71%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 VGELFTSSAPYDPLFWVIHPTADRFLAWRRKLAAE 105
            VG+++TS+AP+DPLFW+IHPTA+R L +RR L AE
Sbjct:  221 VGDMYTSAAPWDPLFWLIHPTAERLLHFRRTLDAE 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8880.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PKD5.890e-1686.84domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
TYR3.810e-1581.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
PKD5.230e-1581.58domain-containing protein n=1 Tax=Ectocarpus silic... [more]
PKD1.820e-1478.95domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical4.390e-1271.43protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]
Putative9.360e-1277.14scytonemin-related tyrosinase n=1 Tax=Ectocarpus s... [more]
TYR1.280e-1174.29protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Hypothetical1.750e-972.73protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Hypothetical1.700e-867.74protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical2.280e-865.71protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8880contigH-canaliculatus_M_contigs8880:1002..1121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G0J9
PFAMsTyrosinase
Model size120
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.57e-16
EggNOG OGs2D2AI@1|root,2SM4K@2759|Eukaryota
DescriptionCommon central domain of tyrosinase
Cds size120
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854178.2781177-CDS-H-canaliculatus_M_contigs8880:1001..11211696854178.2781177-CDS-H-canaliculatus_M_contigs8880:1001..1121Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8880 1002..1121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8880.1.1prot_H-canaliculatus_M_contigs8880.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8880 1002..1121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8880.1.1

>prot_H-canaliculatus_M_contigs8880.1.1 ID=prot_H-canaliculatus_M_contigs8880.1.1|Name=mRNA_H-canaliculatus_M_contigs8880.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=40bp
VGELFTSSAPYDPLFWVIHPTADRFLAWRRKLAAEHPDT*
back to top

mRNA from alignment at H-canaliculatus_M_contigs8880:1002..1121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8880.1.1 ID=mRNA_H-canaliculatus_M_contigs8880.1.1|Name=mRNA_H-canaliculatus_M_contigs8880.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=120bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8880:1002..1121+ (Hapterophycus canaliculatus Oshoro7m male)
GTCGGCGAGCTCTTCACGTCCTCGGCACCGTACGACCCCCTGTTCTGGGT GATCCACCCCACCGCCGACCGCTTCCTGGCGTGGAGGAGAAAGCTGGCCG CCGAACACCCCGACACGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8880:1002..1121+

>mRNA_H-canaliculatus_M_contigs8880.1.1 ID=mRNA_H-canaliculatus_M_contigs8880.1.1|Name=mRNA_H-canaliculatus_M_contigs8880.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=120bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8880:1002..1121+ (Hapterophycus canaliculatus Oshoro7m male)
GTCGGCGAGCTCTTCACGTCCTCGGCACCGTACGACCCCCTGTTCTGGGT
GATCCACCCCACCGCCGACCGCTTCCTGGCGTGGAGGAGAAAGCTGGCCG
CCGAACACCCCGACACGTGA
back to top