mRNA_H-canaliculatus_M_contigs8871.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Match: Polyadenylate-binding (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI) HSP 1 Score: 202 bits (513), Expect = 4.360e-55 Identity = 122/136 (89.71%), Postives = 125/136 (91.91%), Query Frame = 1
Query: 67 GRGNFKYTQGVRNQQPGAPNMPPXXXXXXXXXXXXXXXXS---MPGPVPQAAPATNESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPEALSAKINEALQVLSEHQQEVN 465
GRGNFKYTQGVRNQQPGAPNMPP XXXXXXXXXXXX MP P PQAAPATNESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESP++L+AKINEALQVLSEHQQE N
Sbjct: 553 GRGNFKYTQGVRNQQPGAPNMPPQXXXXXXXXXXXXGAPXXXXMPAPGPQAAPATNESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPDSLAAKINEALQVLSEHQQENN 688
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Match: Polyadenylate-binding (protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN) HSP 1 Score: 131 bits (330), Expect = 5.970e-30 Identity = 89/162 (54.94%), Postives = 95/162 (58.64%), Query Frame = 1
Query: 10 RGGPQGRGM---PQQPXXXXXXGRGNFKYTQGVRNQQ------PGAPNMPPXXXXXXXXXXXXXXXXSMPGPVPQAAPATN-----ESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPEALSAKINEALQVLSEHQ 453
RG P+GR P P R NFKYT VRNQ PGAP PG +P AAP E L++AALAAA PE QKNMIGERLYPLI+ QP LAGKITGMLLEMDNGELLHLLESPEAL AKI EA+QVL HQ
Sbjct: 486 RGQPRGRRQGPGPAGPQAGAPVNRRNFKYTANVRNQPRPEGVAPGAP---------------------APGVMPPAAPVQPGVPHLEPLTSAALAAASPETQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAIQVLEAHQ 626
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Match: Polyadenylate-binding (protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0WN78_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.540e-28 Identity = 80/147 (54.42%), Postives = 87/147 (59.18%), Query Frame = 1
Query: 19 PQGRGMPQQPXXXXXXGRGNFKYTQGVRNQQPGAPNMPPXXXXXXXXXXXXXXXXSMPGPVPQAAPATNESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPEALSAKINEALQVLSEHQQE 459
PQ G P Q R NFKYT RNQ P +P PG +PQ P L++AALAAA P QKNMIGERL+PLI+ QP LAGKITGMLLEMDNGELLHLLESP+AL AKI EAL VL HQ E
Sbjct: 547 PQMAGPPGQANPNANRNRNNFKYTANARNQPPVQEPVP-----------------QQPGGIPQMEP-----LTSAALAAASPGMQKNMIGERLFPLIHRSQPELAGKITGMLLEMDNGELLHLLESPDALDAKIAEALAVLEAHQSE 671
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Match: Polyadenylate-binding (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA) HSP 1 Score: 126 bits (317), Expect = 3.810e-28 Identity = 94/142 (66.20%), Postives = 100/142 (70.42%), Query Frame = 1
Query: 31 GMPQQPXXXXXXGRGNFKYTQGVRNQ--QPGAPNMPPXXXXXXXXXXXXXXXXSMPGPVPQAAPATNESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPEALSAKINEALQVLSEH 450
G PQQ +GNFKYTQ VRN Q AP M XXXXXXXXXXXXXX + ESL+A ALAAA PE QKNMIGERLYPLI+E QP LAGKITGMLLEMDNGELLHLLESP++L AKI EALQVL H
Sbjct: 539 GAPQQAQAGGVPQQGNFKYTQQVRNPPAQGQAPQMGGMXXXXXXXXXXXXXXQA-------------ESLTAQALAAASPEMQKNMIGERLYPLIHESQPELAGKITGMLLEMDNGELLHLLESPDSLKAKIQEALQVLEAH 667
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8W3_9STRA) HSP 1 Score: 116 bits (290), Expect = 4.270e-28 Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 1
Query: 223 NESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPEALSAKINEALQVLSEH 450
NE+L+A+ALA+A PE QKNMIGERLYPLI+ QP LAGKITGMLLEMDN ELLHLLESP+AL+AKI EALQVL H
Sbjct: 36 NEALTASALASATPEMQKNMIGERLYPLIHHSQPDLAGKITGMLLEMDNSELLHLLESPDALNAKIQEALQVLEAH 111
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Match: Polyadenylate-binding (protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X8Z0_GLOUD) HSP 1 Score: 126 bits (316), Expect = 4.470e-28 Identity = 79/132 (59.85%), Postives = 84/132 (63.64%), Query Frame = 1
Query: 70 RGNFKYTQGVRNQQPG----APNMPPXXXXXXXXXXXXXXXXSMPGPVPQAAPATNESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPEALSAKINEALQVLSEHQ 453
R NFKYT VRNQ P AP PP PV P E L++AALAAA P+ QKNMIGERLYPLI+ QP LAGKITGMLLEMDNGELLHLLESPEAL AKI EA+QVL HQ
Sbjct: 519 RRNFKYTANVRNQPPREGAPAPGAPPA------------------APVQVGGP---EPLTSAALAAASPDVQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAIQVLEAHQ 629
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Match: Polyadenylate-binding (protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=M4B4S0_HYAAE) HSP 1 Score: 126 bits (316), Expect = 4.510e-28 Identity = 80/131 (61.07%), Postives = 84/131 (64.12%), Query Frame = 1
Query: 70 RGNFKYTQGVRNQQPGAPNMPPXXXXXXXXXXXXXXXXSMPGPVPQAAPATN---ESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPEALSAKINEALQVLSEHQ 453
R NFKYT RN A MPP G +P AAP N E L++AALAAA PE QKNMIGERLYPLI+ QP LAGKITGMLLEMDNGELLHLLESPEAL AKI EAL VL HQ
Sbjct: 521 RRNFKYTANARNHP--AREMPPQ------------------GVMPPAAPVQNAGPEPLTSAALAAASPEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEALAVLEAHQ 631
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8R0_9STRA) HSP 1 Score: 116 bits (290), Expect = 6.070e-28 Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 1
Query: 211 APATNESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPEALSAKINEALQVLSEHQQE 459
AP +L+ +ALAAA P +QKNMIGERLYPLI QP LAGKITGMLLEMDN ELLHLLESP+AL AKINEALQVL +HQQ+
Sbjct: 45 APPVEAALTPSALAAASPTQQKNMIGERLYPLIMGTQPQLAGKITGMLLEMDNSELLHLLESPDALQAKINEALQVLEKHQQQ 127
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4ZHX5_PHYSP) HSP 1 Score: 120 bits (300), Expect = 2.150e-27 Identity = 68/90 (75.56%), Postives = 73/90 (81.11%), Query Frame = 1
Query: 193 GPVPQAAPATN---ESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPEALSAKINEALQVLSEHQ 453
G +P AAP N E L++AALAAA PE QKNMIGERLYPLI+ QP LAGKITGMLLEMDNGELLHLLESPEAL AKI+EAL VL HQ
Sbjct: 227 GVMPPAAPVQNAGPEPLTSAALAAASPEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKISEALAVLEAHQ 316
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Match: Polyadenylate-binding (protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LR95_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.370e-27 Identity = 79/131 (60.31%), Postives = 84/131 (64.12%), Query Frame = 1
Query: 70 RGNFKYTQGVRNQQPGAPNMPPXXXXXXXXXXXXXXXXSMPGPVPQAAPATN---ESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPEALSAKINEALQVLSEHQ 453
R NFKYT RN A + PP G +P AAP N E L++AALAAA PE QKNMIGERLYPLI+ QP LAGKITGMLLEMDNGELLHLLESPEAL AKI EAL VL HQ
Sbjct: 562 RRNFKYTANARNHP--ARDAPPQ------------------GVMPPAAPVQNAGPEPLTSAALAAASPEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEALTVLEAHQ 672 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8871.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8871.1.1 >prot_H-canaliculatus_M_contigs8871.1.1 ID=prot_H-canaliculatus_M_contigs8871.1.1|Name=mRNA_H-canaliculatus_M_contigs8871.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=145bp MPQQPQGPGGPGRGNFKYTQGVRNQQPGAPNMPPQQQQQQQQQQSAPQQQback to top mRNA from alignment at H-canaliculatus_M_contigs8871:2453..4836- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8871.1.1 ID=mRNA_H-canaliculatus_M_contigs8871.1.1|Name=mRNA_H-canaliculatus_M_contigs8871.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2384bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8871:2453..4836- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8871:2453..4836- >mRNA_H-canaliculatus_M_contigs8871.1.1 ID=mRNA_H-canaliculatus_M_contigs8871.1.1|Name=mRNA_H-canaliculatus_M_contigs8871.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=435bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8871:2453..4836- (Hapterophycus canaliculatus Oshoro7m male)back to top |