mRNA_H-canaliculatus_M_contigs8828.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8828.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8828.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8828.1.1 vs.
Match: VWFA (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK28_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 6.130e-19
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 QVQIRYTRLDGTKCLRVLTKTQRVTKSKSDAEKSISMAVVAGHAASSSGRMASKGAYQSSR 183
            QVQI YTRLDGTKCLRVLTKTQRVTKSK+ AE+S+ MAVVAGHA+S+SG +ASKGAYQS+R
Sbjct:  699 QVQISYTRLDGTKCLRVLTKTQRVTKSKAAAERSMEMAVVAGHASSASGVLASKGAYQSTR 759
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BLAST of mRNA_H-canaliculatus_M_contigs8828.1.1 vs.
Match: Sec23/Sec24 (trunk domain containing protein n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G8Q6_9CRUS)

HSP 1 Score: 59.7 bits (143), Expect = 6.580e-9
Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 QVQIRYTRLDGTKCLRVLTKTQRVTKSKSDAEKSISMAVVAGHAASSSGRMASKGAYQSSR 183
            QVQI+YTRLDG++C+RV+T+ + +T SK +AE  + +AV+A +A   S ++A KG Y+SSR
Sbjct:  670 QVQIQYTRLDGSRCIRVITQVKEITHSKEEAEADVDIAVMAANAVQKSAQLAQKGDYESSR 730
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BLAST of mRNA_H-canaliculatus_M_contigs8828.1.1 vs.
Match: Type (A von Willebrand factor (VWFA) domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HEQ6_ACACA)

HSP 1 Score: 57.8 bits (138), Expect = 3.140e-8
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 QVQIRYTRLDGTKCLRVLTKTQRVTKSKSDAEKSISMAVVAGHAASSSGRMASKGAYQSSR 183
            QVQI YTRLDG+KC+RVLTK Q+VT  K +A K + +AV+  +A   +G MA +G Y+ +R
Sbjct:  647 QVQIHYTRLDGSKCVRVLTKQQKVTTQKEEALKEVDVAVIGHNAVQQAGVMAQRGDYEGAR 707
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BLAST of mRNA_H-canaliculatus_M_contigs8828.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NVA1_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 1.950e-5
Identity = 25/58 (43.10%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 QVQIRYTRLDGTKCLRVLTKTQRVTKSKSDAEKSISMAVVAGHAASSSGRMASKGAYQ 174
            QVQIRYT++DGTK +RV+T+ ++VT+SK  AE+++++AV++   + ++  +A++G Y+
Sbjct:   54 QVQIRYTKMDGTKVIRVITQLKKVTESKETAEENVNVAVLSSAVSKAATSLAAQGKYE 111
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BLAST of mRNA_H-canaliculatus_M_contigs8828.1.1 vs.
Match: VWFA (domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KZ87_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 2.250e-5
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 QVQIRYTRLDGTKCLRVLTKTQRVTKSKSDAEKSISMAVVAGHAASSSGRMASKGAYQSSR 183
            QVQI +T+LDGTKCLRV++K   VT  + +AEK +++ VV  H+   S ++A++G Y  +R
Sbjct:  485 QVQIHFTKLDGTKCLRVMSKMAEVTHDRLEAEKHVNVNVVGLHSHVQSAQLAAEGQYSKAR 545
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8828.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
VWFA6.130e-1981.97domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Sec23/Sec246.580e-950.82trunk domain containing protein n=2 Tax=Hirondelle... [more]
Type3.140e-852.46A von Willebrand factor (VWFA) domain containing p... [more]
Hypothetical1.950e-543.10protein n=1 Tax=Paramoeba aestuarina TaxID=180227 ... [more]
VWFA2.250e-545.90domain-containing protein n=1 Tax=Arcella intermed... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8828contigH-canaliculatus_M_contigs8828:3836..4201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LK28
PFAMsSec23_BS,Sec23_trunk,VWA_2,zf-Sec23_Sec24
Model size183
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.01e-19
EggNOG OGs29A2H@1|root,2RH4Z@2759|Eukaryota
Descriptionvon Willebrand factor (vWF) type A domain
Cds size183
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854175.1857052-CDS-H-canaliculatus_M_contigs8828:3835..39101696854175.1857052-CDS-H-canaliculatus_M_contigs8828:3835..3910Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8828 3836..3910 -
1696854175.1974719-CDS-H-canaliculatus_M_contigs8828:4093..42011696854175.1974719-CDS-H-canaliculatus_M_contigs8828:4093..4201Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8828 4094..4201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8828.1.1prot_H-canaliculatus_M_contigs8828.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8828 3836..4201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8828.1.1

>prot_H-canaliculatus_M_contigs8828.1.1 ID=prot_H-canaliculatus_M_contigs8828.1.1|Name=mRNA_H-canaliculatus_M_contigs8828.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=61bp
QVQIRYTRLDGTKCLRVLTKTQRVTKSKSDAEKSISMAVVAGHAASSSGR
MASKGAYQSSR
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mRNA from alignment at H-canaliculatus_M_contigs8828:3836..4201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8828.1.1 ID=mRNA_H-canaliculatus_M_contigs8828.1.1|Name=mRNA_H-canaliculatus_M_contigs8828.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=366bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8828:3836..4201- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTCCAGATTCGGTACACCCGCTTGGACGGCACCAAGTGCCTGCGCGT
GCTGACGAAGACCCAGAGGGTCACCAAGAGCAAGTCCGACGCCGAGAAAT
CCATATCTGTACGTGCGGCCGCGACCTGACTGCTCGACATTTACCATTCT
CGTTGTTGTTGTCTTTAAAGAAGACATAACAACATTGTTGTTGTTGTTGT
TGTTGTTGTTGTTTTTAGCGTTGCCGACTACCTCATCCTGAAGGTGCTCC
TGCTTCCCGCTCCTTTTTCATCCAACCCGGCCCCCAACTAGATGGCGGTG
GTGGCCGGGCATGCCGCAAGCAGCTCCGGAAGGATGGCGAGCAAGGGCGC
CTACCAGTCAAGCCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8828:3836..4201-

>mRNA_H-canaliculatus_M_contigs8828.1.1 ID=mRNA_H-canaliculatus_M_contigs8828.1.1|Name=mRNA_H-canaliculatus_M_contigs8828.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=183bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8828:3836..4201- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTCCAGATTCGGTACACCCGCTTGGACGGCACCAAGTGCCTGCGCGT
GCTGACGAAGACCCAGAGGGTCACCAAGAGCAAGTCCGACGCCGAGAAAT
CCATATCTATGGCGGTGGTGGCCGGGCATGCCGCAAGCAGCTCCGGAAGG
ATGGCGAGCAAGGGCGCCTACCAGTCAAGCCGC
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