mRNA_H-canaliculatus_M_contigs8824.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8824.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8824.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Match: CAP-Gly (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI4_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 5.280e-32
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 1
Query:   34 EKVRLQGGTVRNAVVRYVGETQFATGVWVGVELSPDAVPPGLNDGTVNGVSYFTCPPACGVFAKPDMFELVEEEEGE 264
            ++V LQG   R AVVRYVGETQFATGVWVGVELSPDA PPG NDG+V GVSYF CPP CGVFAKPDMFEL+EEEEG+
Sbjct:  381 QQVCLQGQKKRAAVVRYVGETQFATGVWVGVELSPDADPPGNNDGSVRGVSYFKCPPLCGVFAKPDMFELLEEEEGD 457          
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Match: CAP-Gly (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBA3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 4.070e-30
Identity = 61/80 (76.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   16 TMRLTSEKVRLQGGTVRNAVVRYVGETQFATGVWVGVELSPDAVPPGLNDGTVNGVSYFTCPPACGVFAKPDMFELVEEE 255
            T  +   KV LQG   R AVVRYVGETQFATGVWVGVELSP A PPG NDG+V GVSYF CPP CGVFAKPDMFEL+EEE
Sbjct:  363 TSLVEGSKVCLQGQKKRAAVVRYVGETQFATGVWVGVELSPGADPPGNNDGSVRGVSYFKCPPLCGVFAKPDMFELLEEE 442          
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Match: CAP-Gly (domain-containing protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NMS9_PIRSE)

HSP 1 Score: 68.6 bits (166), Expect = 1.960e-13
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   67 NAVVRYVGETQFATGVWVGVELSPDAVPPGLNDGTVNGVSYFTCPPACGVFAKPDMFELV 246
            N V+R++G TQFA+G W+G+EL     P G N+G++NGV YF+C P  GVF +P M +++
Sbjct:    2 NGVIRFIGTTQFASGNWIGIELEK---PVGKNNGSINGVEYFSCKPLYGVFVRPAMVKIL 58          
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Match: CAP (Gly-rich domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.960e-13
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   76 VRYVGETQFATGVWVGVELSPDAVPPGLNDGTVNGVSYFTCPPACGVFAKPDM 234
            V++VG TQFA+G WVGV+L       G NDGTVNGV YF CPP  G+F +P+M
Sbjct:    3 VKFVGSTQFASGTWVGVQLDSTH---GKNDGTVNGVYYFKCPPNTGIFVRPNM 52          
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1WB37_NEODS)

HSP 1 Score: 68.9 bits (167), Expect = 5.390e-13
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   52 GGTVRNAVVRYVGETQFATGVWVGVELSPDAVPPGLNDGTVNGVSYFTCPPACGVFAKPDMFELVEEEEGEE 267
            G  +R+    ++G T+FA G+WVGVEL  DA  PG NDG V GV YF C P  GVF +P++ E +    G E
Sbjct:   24 GDEIRSGTCLFLGATEFADGIWVGVEL--DAQWPGKNDGAVQGVKYFECSPGQGVFVRPELVETLASASGGE 93          
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Match: (California (timema) hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9P9Q3_TIMCA)

HSP 1 Score: 71.2 bits (173), Expect = 5.650e-13
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   67 NAVVRYVGETQFATGVWVGVELSPDAVPPGLNDGTVNGVSYFTCPPACGVFAKPDMFELVEEEEG 261
            + VV +VGET+FA G WVG+EL     P G NDGTV GV YFTC P CG+F + D   L+++  G
Sbjct:  106 SGVVTFVGETEFAAGTWVGIELD---APTGKNDGTVQGVQYFTCRPKCGIFVRADK--LIQDRRG 165          
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Match: CAP-Gly (domain-containing linker protein 3 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0010BD0393)

HSP 1 Score: 73.2 bits (178), Expect = 5.740e-13
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   43 RLQGGTVRNAVVRYVGETQFATGVWVGVELSPDAVPPGLNDGTVNGVSYFTCPPACGVFAKPDMF-ELVEEEEGEEDEDATAS 288
            R+  G  R  ++R+VGET+FA+GVW GVEL     P G NDG V GV YF CPP  GVFA      +L+ EEEG +D    AS
Sbjct:  408 RVVVGNRRRGILRFVGETKFASGVWAGVELD---TPEGKNDGCVGGVEYFKCPPNHGVFALVGRIRKLMSEEEGSDDSVKDAS 487          
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MM21_RHIPC)

HSP 1 Score: 72.8 bits (177), Expect = 5.780e-13
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   64 RNAVVRYVGETQFATGVWVGVELSPDAVPPGLNDGTVNGVSYFTCPPACGVFAKP 228
            R  VVR++GETQFA G W G+EL   A P G N+G+VNGV+YFTCPP  GVFA+P
Sbjct:  299 RKGVVRFLGETQFAPGYWCGIEL---AKPEGKNNGSVNGVTYFTCPPNHGVFAQP 350          
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Match: CAP-Gly (domain-containing linker protein 4-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XLM0_9ACAR)

HSP 1 Score: 72.8 bits (177), Expect = 7.910e-13
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   43 RLQGGTVRNAVVRYVGETQFATGVWVGVELSPDAVPPGLNDGTVNGVSYFTCPPACGVFAKPDMFE-LVEEEEGEEDE 273
            R+  G  R  V+R+VGET+FA+G+W GVEL     P G NDG+VNG+ YF CPPA GVFA       ++ EEE   DE
Sbjct:  457 RVVVGNKRKGVLRFVGETKFASGIWAGVELDS---PQGKNDGSVNGMEYFKCPPAHGVFALVGRVRRILPEEEAGSDE 531          
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L0W8_ORNMO)

HSP 1 Score: 72.4 bits (176), Expect = 8.320e-13
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   64 RNAVVRYVGETQFATGVWVGVELSPDAVPPGLNDGTVNGVSYFTCPPACGVFAKPDMFELV 246
            R  +V+++GETQFA G W G+EL     P G NDG+VNGVSYFTCPP  G+FA P    +V
Sbjct:  184 RKGIVKFLGETQFAPGQWCGIELFK---PQGKNDGSVNGVSYFTCPPNHGIFAPPTRVTIV 241          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8824.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CAP-Gly5.280e-3280.52domain-containing protein n=1 Tax=Ectocarpus silic... [more]
CAP-Gly4.070e-3076.25domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
CAP-Gly1.960e-1348.33domain-containing protein (Fragment) n=1 Tax=Pirom... [more]
CAP4.960e-1358.49Gly-rich domain-containing protein (Fragment) n=1 ... [more]
Hypothetical5.390e-1347.22protein (Fragment) n=1 Tax=Neobodo designis TaxID=... [more]
(California5.650e-1352.31timema) hypothetical protein n=2 Tax=Timema TaxID=... [more]
CAP-Gly5.740e-1350.60domain-containing linker protein 3 n=1 Tax=Galendr... [more]
Uncharacterized5.780e-1363.64protein (Fragment) n=1 Tax=Rhipicephalus pulchellu... [more]
CAP-Gly7.910e-1351.28domain-containing linker protein 4-like n=1 Tax=Tr... [more]
Uncharacterized8.320e-1355.74protein (Fragment) n=1 Tax=Ornithodoros moubata Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8824contigH-canaliculatus_M_contigs8824:86..1182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJI4
PFAMsAnk_2,CAP_GLY,Drf_FH3,Drf_GBD,Evr1_Alr,FH2
Model size303
Max annot lvl2759|Eukaryota
KEGG koko:K10423,ko:K10758
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.67e-33
EggNOG OGsCOG5244@1|root,KOG4568@2759|Eukaryota
EC1.8.3.2
Descriptionmicrotubule binding
Cds size294
COG categoryD
BRITEko00000,ko01000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.9374762-CDS-H-canaliculatus_M_contigs8824:85..2341696854174.9374762-CDS-H-canaliculatus_M_contigs8824:85..234Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8824 86..234 -
1696854174.9503772-CDS-H-canaliculatus_M_contigs8824:1028..11731696854174.9503772-CDS-H-canaliculatus_M_contigs8824:1028..1173Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8824 1029..1173 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.9621682-UTR-H-canaliculatus_M_contigs8824:1173..11821696854174.9621682-UTR-H-canaliculatus_M_contigs8824:1173..1182Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8824 1174..1182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8824.2.1prot_H-canaliculatus_M_contigs8824.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8824 86..1173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8824.2.1

>prot_H-canaliculatus_M_contigs8824.2.1 ID=prot_H-canaliculatus_M_contigs8824.2.1|Name=mRNA_H-canaliculatus_M_contigs8824.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=98bp
MSTMRLTSEKVRLQGGTVRNAVVRYVGETQFATGVWVGVELSPDAVPPGL
NDGTVNGVSYFTCPPACGVFAKPDMFELVEEEEGEEDEDATASNDNG*
back to top

mRNA from alignment at H-canaliculatus_M_contigs8824:86..1182-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8824.2.1 ID=mRNA_H-canaliculatus_M_contigs8824.2.1|Name=mRNA_H-canaliculatus_M_contigs8824.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1097bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8824:86..1182- (Hapterophycus canaliculatus Oshoro7m male)
TGTGGCCCGATGTCCACGATGCGTCTTACGTCGGAAAAGGTTCGGCTTCA GGGAGGCACTGTCCGCAACGCAGTCGTCCGGTACGTGGGTGAGACACAGT TCGCGACGGGCGTGTGGGTGGGCGTCGAACTTTCGCCAGACGCCGTTCCT CCAGGTGAAAGCAGCTAGAAAGCAAAGAGAGCAACGGCAGTACAGCAGTA TTGCCCGTACAAGTATTCGTTGGCTGTGTGTCCTCATATCTTTAACCTGC CGTCTGGGCCGCCGATCTACGCGGGAAGCCGCAAAGGCGGTGGGCACGAA GCGAAGTCTTAGGAATGTCATCAGGAAGTAGGTGATTTGCGCAGGGCGGA GCTTTTGAGGCATCAGGCCTGGGGTCGACGTAAGGAGAGAAATGCGGGCT GGCAAGAGATCTTGGATACATGTGCTCGTGCTCAATTCGACGGCTCAAGC GAGGCATGCGAAAGTCTTGGTTTGTCGTGACCGACCCGCCTTCCTCCGAA CAACGACGTTACAACTTGTGGGCTACAAGTCTCTTGCTACAAGTCTCTTG CATCCTGCGTTTCGCCCGTGTCTATTTTTGTTCTTGTCGTGGTCATGGTC GTGATACATTATCCTTGAGCCAAACCTGAAACCAACATGAATGTGCCAAG GTCCCGTGCTTTGTCCCTTCTCCGTGCCGAATCCTGCTTCGAATGAACAA AGTCAACGAACACCGTACGTCTCGCTCATATTCTTGATACTGTACAGTAT GAGGGTTGTCCCACGGTGCTACAGTGCTACAGTGCTACAATGCGCCGTTG AATTGACCAGACGGTGTCGGCGCCTGGTATGTAGTTTAGGTCGTACTACG GCTTTACGATACCAGCGATAGCAGCGAAACAAAAAGAGGAATTAAAAAAC GCCCTGCGTATGTTTCGACTGACGTTCAATTTGACGGATCTTCTTCAGGA CTCAACGATGGGACGGTGAACGGAGTGTCTTACTTCACGTGCCCTCCAGC GTGTGGGGTATTCGCCAAACCCGACATGTTCGAGCTGGTGGAGGAAGAGG AGGGGGAAGAGGACGAGGACGCAACGGCGAGCAACGATAACGGGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8824:86..1182-

>mRNA_H-canaliculatus_M_contigs8824.2.1 ID=mRNA_H-canaliculatus_M_contigs8824.2.1|Name=mRNA_H-canaliculatus_M_contigs8824.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=294bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8824:86..1182- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCCACGATGCGTCTTACGTCGGAAAAGGTTCGGCTTCAGGGAGGCAC
TGTCCGCAACGCAGTCGTCCGGTACGTGGGTGAGACACAGTTCGCGACGG
GCGTGTGGGTGGGCGTCGAACTTTCGCCAGACGCCGTTCCTCCAGGACTC
AACGATGGGACGGTGAACGGAGTGTCTTACTTCACGTGCCCTCCAGCGTG
TGGGGTATTCGCCAAACCCGACATGTTCGAGCTGGTGGAGGAAGAGGAGG
GGGAAGAGGACGAGGACGCAACGGCGAGCAACGATAACGGGTGA
back to top