mRNA_H-canaliculatus_M_contigs8821.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8821.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8821.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN25_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 5.090e-59
Identity = 109/135 (80.74%), Postives = 117/135 (86.67%), Query Frame = 1 
Query:   13 SSSLDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRHALSENGADFPDSLSDNLLRIIGAMKPSKLKSAAGAGXXXXXXKAAPSAAARVPRNEKEARFPGLAMPNTSVVELEDGFEEVDPAK 417
            SSS+DELQ+LSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFP+PAAFR ALSENGA+FPDSL+DNLLRIIGAMKPSK  SA  AG          +A ARVPRNEKEARFPGLAMPNTSVV+LEDGF EVDP +
Sbjct:    3 SSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPDPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKGASAGRAGGGGAKKATPKAAVARVPRNEKEARFPGLAMPNTSVVQLEDGFGEVDPGE 137
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BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 6.170e-59
Identity = 110/136 (80.88%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:   13 SSSLDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRHALSENGADFPDSLSDNLLRIIGAMKPSKLKSAAGAGXXXXXXKAAPSAA-ARVPRNEKEARFPGLAMPNTSVVELEDGFEEVDPAK 417
            SSS+DELQ+LSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFR ALSENGA+FPDSL+DNLLRIIGAMKPSK  SA   G      KA P A+ ARVPRNEKEARFPGLAMPNT  V+LEDGF EVDP +
Sbjct:    3 SSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKAASAGRGGVGGGAKKATPKASVARVPRNEKEARFPGLAMPNTGAVQLEDGFGEVDPGE 138
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BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Match: Putative (pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.070e-41
Identity = 91/134 (67.91%), Postives = 101/134 (75.37%), Query Frame = 1 
Query:   16 SSLDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRHALSENGADFPDSLSDNLLRIIGAMKPSKLKSAAGAGXXXXXXKAAPSAAA----RVPRNEKEARFPGLAMPNTSVVELEDGFEEV 405
            S LDELQ+L+L+SKVCTELDNHLGLSDRTLAEFIIHLA EFPEPAAFR AL+ENGA+FP +L DNLLRII      KL S  G G      +A P+ AA    RVPRNE EA+FPGLAMPNT  VEL+  F EV
Sbjct:    2 SELDELQRLALISKVCTELDNHLGLSDRTLAEFIIHLAAEFPEPAAFRSALAENGAEFPGALCDNLLRII------KLMSGDGGGAGSAA-EAQPAVAASLQPRVPRNETEAKFPGLAMPNTKPVELDPAFHEV 128
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BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DM33_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.850e-31
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 1 
Query:   22 LDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRHALSENGADFPDSLSDNLLRIIGAMKPSKLKSAAGAGXXXXXXKAAPSAAARVPRNEKEARFPGLAMPNTSVVELEDGFE 399
            +DEL  L L+SKVC ELDNHLGLSD+TLAEFI+H+A E      F   L+ENGA+FP +L++++ R+I AMKPSK  S+          K     A+ VPR+E++ +FPGLA+ N+  + + D +E
Sbjct:    1 MDELVHLQLISKVCNELDNHLGLSDKTLAEFIVHIAGEVKSSTDFNEKLAENGAEFPSALAESIWRLIQAMKPSKASSSG--------IKKDAEPASIVPRDERDIQFPGLALKNSKTMSIADAWE 118
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BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRS8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 9.680e-31
Identity = 72/126 (57.14%), Postives = 89/126 (70.63%), Query Frame = 1 
Query:   22 LDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRHALSENGADFPDSLSDNLLRIIGAMKPSKL-KSAAGAGXXXXXXKAAPSAAARVPRNEKEARFPGLAMPNTSVVELEDGF 396
            +++L  L LVSKVCTELDNHLGLSD+TLAEFIIHLAD       F   LS NGA+FP +L+++L R+I  MKP    KS AGAGXXXXXX A P+    VPR++++  FPGLA+PN   V LE+  
Sbjct:    2 MEDLLHLQLVSKVCTELDNHLGLSDKTLAEFIIHLADGVSSATGFEAKLSANGAEFPTALAESLFRLIQQMKPKAGGKSGAGAGXXXXXXXAGPA----VPRDQRDVEFPGLAVPNAKPVSLEEAL 123
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BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Match: Atp-dependent (rna helicase dhx8 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCI3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.240e-26
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:   22 LDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRHALSENGADFPDSLSDNLLRIIGAMKPSKL--KSAAGAGXXXXXXKAAPSAAARVPRNEKEARFPGL 354
            LD+LQ+LSLVSK+CTELD+HLGL+D+TLAEFIIHLA+   +  +FR AL ENGA+FP +  D L  +I AM+P ++  K     G         P    R  RN KEA FPGL
Sbjct:    4 LDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEP----REARNAKEAAFPGL 112
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BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Match: ATP-dependent (RNA helicase DHX8 (Fragment) n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8KWG1_CULPI)

HSP 1 Score: 102 bits (255), Expect = 2.540e-24
Identity = 62/129 (48.06%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:   22 LDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRHALSENGADFPDSLSDNLLRIIGAMKPSKLKSAAGAGXXXXXXKAAPSAAARVPRNEKEARFPGLAMPNTSV---VELEDGFE 399
            L++L+ LSLVSK+CTEL+NHLGL+D+ LAEFII LA++ P    FR  L ENGA+F +S + NLLRII  MKP K +S  G+           S A          +FPGLA+PN       E EDG E
Sbjct:    4 LEQLEHLSLVSKICTELENHLGLNDKDLAEFIIDLAEKNPSEEGFRRVLGENGAEFSESFTANLLRIIQLMKPPKNRSGGGSAADFERDDQVGSLA---------CKFPGLAIPNAKKGYESEPEDGEE 123
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BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Match: Prp22 (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C684_9DINO)

HSP 1 Score: 102 bits (255), Expect = 3.140e-24
Identity = 65/132 (49.24%), Postives = 79/132 (59.85%), Query Frame = 1 
Query:   13 SSSLDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRHALSENGADFPDSLSDNLLRIIGAMKPSKLKSAAGAGXXXXXXKAAPSAAARVPRNEKEARFPGLAMPNTSVVELEDGFEEVD 408
            SS L+ LQ LSLVSKVC ELD+H+GLSD TLAEFIIHLA E   P +F +A+ ENGADF DS + +LL  I +M PSK  SA             P      P+    A FPGLA PN +    +  F+E+D
Sbjct:    2 SSELERLQHLSLVSKVCQELDDHIGLSDATLAEFIIHLAKEHSTPESFANAVRENGADFGDSFAASLLETIHSMLPSKQGSA------PTKTSNKPVIDPNDPKANLVAAFPGLAAPNKAQQFDDLDFKEID 127
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BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Match: RNA (helicase n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GM52_MEGSC)

HSP 1 Score: 106 bits (264), Expect = 6.350e-24
Identity = 66/130 (50.77%), Postives = 82/130 (63.08%), Query Frame = 1 
Query:   22 LDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRHALSENGADFPDSLSDNLLRIIGAMKPSKLKSAAGAGXXXXXXKAAPSAAARVPRNEKEAR-FPGLAMPNTSVVELEDGFEEVD 408
            L +L+ LSLVSK+CTELDNHLG++D+ LAEFIIHLADE P    FR AL  NGA+FPDSL++NLLRII  M+ S  KS+          K   +      ++EK A  FPGLA+PN    + E   E  D
Sbjct:    4 LKQLEYLSLVSKICTELDNHLGINDKDLAEFIIHLADENPALTDFRRALESNGAEFPDSLTENLLRIIKLMRSSSGKSS------DVDTKTYDT------KSEKLANLFPGLAIPNEKKAKEESDDEVAD 121
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BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MKA8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.190e-24
Identity = 63/131 (48.09%), Postives = 83/131 (63.36%), Query Frame = 1 
Query:   10 ASSSLDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRHALSENGADFPDSLSDNLLRIIGAMKPSKLKSAAGAGXXXXXXKAAPSAAARVPRNEKEARFPGLAMPNTSVVELEDGFEE 402
            A ++++ LQ+L L+SKVC+ELDNHLG SD+TLAEFIIHLA +  +P  F  AL ENGA+FP + +DNL RII     +KL      G         P+AA      +++ RFPGL+ PNT+ V L D  EE
Sbjct:    2 AHANMENLQRLGLISKVCSELDNHLGFSDKTLAEFIIHLAQQNSDPKQFHKALLENGAEFPTNTADNLHRII-----NKLSGKNSTGSTSSDV--VPTAANMT---KEQKRFPGLSRPNTAPVALLDITEE 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8821.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.090e-5980.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.170e-5980.88protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative1.070e-4167.91pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
Hypothetical8.850e-3147.62protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Hypothetical9.680e-3157.14protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Atp-dependent5.240e-2652.21rna helicase dhx8 (Fragment) n=1 Tax=Nannochlorops... [more]
ATP-dependent2.540e-2448.06RNA helicase DHX8 (Fragment) n=2 Tax=Culex pipiens... [more]
Prp223.140e-2449.24protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 ... [more]
RNA6.350e-2450.77helicase n=1 Tax=Megaselia scalaris TaxID=36166 Re... [more]
Hypothetical8.190e-2448.09protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8821contigH-canaliculatus_M_contigs8821:1013..1432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LN25
Preferred nameDHX8
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,S1
Model size420
Max annot lvl2759|Eukaryota
KEGG koko:K12818
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000350,GO:0000375,GO:0000377,GO:0000390,GO:0000393,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006139,GO:0006325,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009653,GO:0009790,GO:0009987,GO:0010171,GO:0010172,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018992,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032988,GO:0032991,GO:0034622,GO:0034641,GO:0040007,GO:0040021,GO:0040022,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0046483,GO:0048468,GO:0048477,GO:0048589,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051276,GO:0051704,GO:0055044,GO:0065003,GO:0070013,GO:0070035,GO:0071007,GO:0071013,GO:0071014,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons1
Evalue8.35e-60
EggNOG OGsCOG1643@1|root,KOG0922@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size420
COG categoryL
BRITEko00000,ko00001,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.9016042-CDS-H-canaliculatus_M_contigs8821:1012..14321696854174.9016042-CDS-H-canaliculatus_M_contigs8821:1012..1432Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8821 1013..1432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8821.1.1prot_H-canaliculatus_M_contigs8821.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8821 1013..1432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8821.1.1

>prot_H-canaliculatus_M_contigs8821.1.1 ID=prot_H-canaliculatus_M_contigs8821.1.1|Name=mRNA_H-canaliculatus_M_contigs8821.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=140bp
MPAASSSLDELQQLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPA
AFRHALSENGADFPDSLSDNLLRIIGAMKPSKLKSAAGAGGRGGGGKAAP
SAAARVPRNEKEARFPGLAMPNTSVVELEDGFEEVDPAKQ
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mRNA from alignment at H-canaliculatus_M_contigs8821:1013..1432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8821.1.1 ID=mRNA_H-canaliculatus_M_contigs8821.1.1|Name=mRNA_H-canaliculatus_M_contigs8821.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=420bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8821:1013..1432+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCCTGCGGCGAGCAGCAGCCTGGACGAGCTGCAGCAGCTTTCCCTGGT
GTCCAAGGTCTGCACCGAGCTCGACAACCATCTGGGCCTGAGCGACCGCA
CCCTGGCCGAGTTCATCATCCACCTGGCCGACGAGTTCCCGGAGCCCGCG
GCCTTCCGCCACGCCCTCTCGGAAAATGGAGCCGACTTCCCCGACTCGCT
GTCCGACAACCTCCTGCGTATCATCGGCGCCATGAAGCCTAGCAAGCTCA
AGTCGGCGGCGGGGGCGGGCGGGAGGGGCGGCGGAGGCAAGGCCGCGCCG
AGCGCGGCCGCGAGGGTCCCCAGGAATGAAAAAGAGGCGAGGTTTCCCGG
GCTCGCCATGCCGAACACCAGCGTCGTGGAGCTCGAGGACGGCTTCGAGG
AGGTCGACCCGGCCAAGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8821:1013..1432+

>mRNA_H-canaliculatus_M_contigs8821.1.1 ID=mRNA_H-canaliculatus_M_contigs8821.1.1|Name=mRNA_H-canaliculatus_M_contigs8821.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8821:1013..1432+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCCTGCGGCGAGCAGCAGCCTGGACGAGCTGCAGCAGCTTTCCCTGGT
GTCCAAGGTCTGCACCGAGCTCGACAACCATCTGGGCCTGAGCGACCGCA
CCCTGGCCGAGTTCATCATCCACCTGGCCGACGAGTTCCCGGAGCCCGCG
GCCTTCCGCCACGCCCTCTCGGAAAATGGAGCCGACTTCCCCGACTCGCT
GTCCGACAACCTCCTGCGTATCATCGGCGCCATGAAGCCTAGCAAGCTCA
AGTCGGCGGCGGGGGCGGGCGGGAGGGGCGGCGGAGGCAAGGCCGCGCCG
AGCGCGGCCGCGAGGGTCCCCAGGAATGAAAAAGAGGCGAGGTTTCCCGG
GCTCGCCATGCCGAACACCAGCGTCGTGGAGCTCGAGGACGGCTTCGAGG
AGGTCGACCCGGCCAAGCAG
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