mRNA_H-canaliculatus_M_contigs8820.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8820.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8820.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Match: Heat (shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI3_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.010e-16
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV 117
            MSVIGIDFGNDTCVIGMAARGGIDIILNE+SNRKNPTLV
Sbjct:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLV 39
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BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BDU3_HYAAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.080e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV 117
            MSVIG+DFGN  CVIG A RGGIDIILNE+SNRKNP +V
Sbjct:    1 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMV 39
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BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8P5_PYTOL)

HSP 1 Score: 67.4 bits (163), Expect = 4.770e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV 117
            MSVIG+DFGN  CVIG A RGGIDIILNE+SNRKNP LV
Sbjct:  170 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNLV 208
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BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Match: Heat (shock protein 70 putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW29_PYTIN)

HSP 1 Score: 66.6 bits (161), Expect = 8.890e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV 117
            MSVIG+DFGN  CVIG A RGGIDIILNE+SNRKNP +V
Sbjct:  782 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMV 820
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BDU2_HYAAE)

HSP 1 Score: 66.6 bits (161), Expect = 8.930e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV 117
            MSVIG+DFGN  CVIG A RGGIDIILNE+SNRKNP +V
Sbjct:    1 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMV 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDW0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.930e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV 117
            MSVIG+DFGN  CVIG A RGGIDIILNE+SNRKNP +V
Sbjct:    1 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMV 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Match: Uncharacterized (protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3GY14_PHYRM)

HSP 1 Score: 66.6 bits (161), Expect = 8.930e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV 117
            MSVIG+DFGN  CVIG A RGGIDIILNE+SNRKNP +V
Sbjct:    1 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMV 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAQ7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.930e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV 117
            MSVIG+DFGN  CVIG A RGGIDIILNE+SNRKNP +V
Sbjct:    1 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMV 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Match: Heat (shock protein 70 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9F2_PLAHL)

HSP 1 Score: 66.6 bits (161), Expect = 8.930e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV 117
            MSVIG+DFGN  CVIG A RGGIDIILNE+SNRKNP +V
Sbjct:    1 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMV 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV72_GLOUD)

HSP 1 Score: 66.6 bits (161), Expect = 8.930e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV 117
            MSVIG+DFGN  CVIG A RGGIDIILNE+SNRKNP +V
Sbjct:    1 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMV 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8820.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Heat3.010e-1697.44shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
Uncharacterized1.080e-1279.49protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Uncharacterized4.770e-1282.05protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Heat8.890e-1279.49shock protein 70 putative n=1 Tax=Pythium insidios... [more]
Uncharacterized8.930e-1279.49protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Uncharacterized8.930e-1279.49protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized8.930e-1279.49protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3G... [more]
Uncharacterized8.930e-1279.49protein n=1 Tax=Peronospora effusa TaxID=542832 Re... [more]
Heat8.930e-1279.49shock protein 70 n=1 Tax=Plasmopara halstedii TaxI... [more]
Uncharacterized8.930e-1279.49protein n=1 Tax=Globisporangium ultimum (strain AT... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8820contigH-canaliculatus_M_contigs8820:234..350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog115417.EPrPW00000019676
PFAMsHSP70
Model size117
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.47e-12
EggNOG OGsCOG0443@1|root,KOG0103@2759|Eukaryota,1MCTU@121069|Pythiales
DescriptionHeat shock protein
Cds size117
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.86855-CDS-H-canaliculatus_M_contigs8820:233..3501696854174.86855-CDS-H-canaliculatus_M_contigs8820:233..350Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8820 234..350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8820.1.1prot_H-canaliculatus_M_contigs8820.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8820 234..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8820.1.1

>prot_H-canaliculatus_M_contigs8820.1.1 ID=prot_H-canaliculatus_M_contigs8820.1.1|Name=mRNA_H-canaliculatus_M_contigs8820.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=39bp
MSVIGIDFGNDTCVIGMAARGGIDIILNESSNRKNPTLV
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mRNA from alignment at H-canaliculatus_M_contigs8820:234..350-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8820.1.1 ID=mRNA_H-canaliculatus_M_contigs8820.1.1|Name=mRNA_H-canaliculatus_M_contigs8820.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8820:234..350- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGGTGATCGGCATTGACTTCGGCAATGACACGTGCGTGATCGGGAT
GGCGGCCAGGGGGGGCATTGACATCATCCTGAACGAGAGCTCCAACCGCA
AGAACCCAACCCTGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8820:234..350-

>mRNA_H-canaliculatus_M_contigs8820.1.1 ID=mRNA_H-canaliculatus_M_contigs8820.1.1|Name=mRNA_H-canaliculatus_M_contigs8820.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8820:234..350- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGGTGATCGGCATTGACTTCGGCAATGACACGTGCGTGATCGGGAT
GGCGGCCAGGGGGGGCATTGACATCATCCTGAACGAGAGCTCCAACCGCA
AGAACCCAACCCTGGTG
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