mRNA_H-canaliculatus_M_contigs882.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs882.1.1
Unique NamemRNA_H-canaliculatus_M_contigs882.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs882.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT2_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.270e-7
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  141 IKHRVS--------GSAGLSRIDASAGRGRCAAPRMTAGSSGEEDLGFVEKVTVAWGTVIEQ 302
            +KHRVS        GS  LS ++      R   P+MTAGSSGEE++GFVEKVT AWGTVIEQ
Sbjct:    4 LKHRVSKSRLASPGGSPLLSTLN------RRPTPQMTAGSSGEEEVGFVEKVTTAWGTVIEQ 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs882.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.270e-756.45protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs882contigH-canaliculatus_M_contigs882:555..856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHT2
Model size303
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.88e-08
EggNOG OGs2BW3W@1|root,2S5TX@2759|Eukaryota
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.8197906-CDS-H-canaliculatus_M_contigs882:554..8451696854174.8197906-CDS-H-canaliculatus_M_contigs882:554..845Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs882 555..845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.832394-UTR-H-canaliculatus_M_contigs882:845..8561696854174.832394-UTR-H-canaliculatus_M_contigs882:845..856Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs882 846..856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs882.1.1prot_H-canaliculatus_M_contigs882.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs882 555..845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs882.1.1

>prot_H-canaliculatus_M_contigs882.1.1 ID=prot_H-canaliculatus_M_contigs882.1.1|Name=mRNA_H-canaliculatus_M_contigs882.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=97bp
MKATGCGSRQWLRPSSTGIATFVAVLSILARGHAFAQIGRPMSIKHRVSG
SAGLSRIDASAGRGRCAAPRMTAGSSGEEDLGFVEKVTVAWGTVIEQ
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mRNA from alignment at H-canaliculatus_M_contigs882:555..856-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs882.1.1 ID=mRNA_H-canaliculatus_M_contigs882.1.1|Name=mRNA_H-canaliculatus_M_contigs882.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=302bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs882:555..856- (Hapterophycus canaliculatus Oshoro7m male)
CTACCTGTCGAATGAAGGCTACCGGCTGCGGATCTAGACAGTGGCTGCGG
CCCTCGTCGACCGGGATTGCTACCTTTGTCGCGGTCCTGTCGATCCTCGC
TCGAGGACACGCTTTCGCGCAAATCGGCCGGCCAATGTCGATCAAGCACC
GCGTCAGCGGCAGCGCAGGACTGTCGAGAATCGATGCCTCCGCTGGGAGA
GGTAGGTGCGCCGCTCCGCGGATGACGGCGGGTAGCAGCGGCGAGGAGGA
CCTGGGGTTTGTCGAAAAGGTCACCGTGGCCTGGGGTACGGTCATCGAAC
AG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs882:555..856-

>mRNA_H-canaliculatus_M_contigs882.1.1 ID=mRNA_H-canaliculatus_M_contigs882.1.1|Name=mRNA_H-canaliculatus_M_contigs882.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=291bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs882:555..856- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGGCTACCGGCTGCGGATCTAGACAGTGGCTGCGGCCCTCGTCGAC
CGGGATTGCTACCTTTGTCGCGGTCCTGTCGATCCTCGCTCGAGGACACG
CTTTCGCGCAAATCGGCCGGCCAATGTCGATCAAGCACCGCGTCAGCGGC
AGCGCAGGACTGTCGAGAATCGATGCCTCCGCTGGGAGAGGTAGGTGCGC
CGCTCCGCGGATGACGGCGGGTAGCAGCGGCGAGGAGGACCTGGGGTTTG
TCGAAAAGGTCACCGTGGCCTGGGGTACGGTCATCGAACAG
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