mRNA_H-canaliculatus_M_contigs8811.1.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI) HSP 1 Score: 447 bits (1151), Expect = 2.270e-144 Identity = 242/284 (85.21%), Postives = 255/284 (89.79%), Query Frame = 1
Query: 1 GASATLPPAVTAQARAAGKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
G+S+T PA+T+QARAAGKALLEAEVAAW AQR RHASGDDKWV QVLRGGTLSDKVAALTLQVQESPVHRL+VLDGLLDLGLKKERRTAQMALEALKDLFITNLLPD+R+LV FE RPL+QALA+V G GQ G S +GV+SPGGKAAGKALLMWY+EDQIL RFYR+VGAIEAGSRDTVENFKRFSLEAAKDLLEAKPE EGRLLALLVNKLGDPDRKISSKVIHLLQRLL KHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV
Sbjct: 221 GSSSTASPAMTSQARAAGKALLEAEVAAWTAQRERHASGDDKWVAQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFETRPLLQALASVTEEGNKGQGGG-----GDSVPGGGRGVNSPGGKAAGKALLMWYYEDQILNRFYRLVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEGEGRLLALLVNKLGDPDRKISSKVIHLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 499
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: Reverse (transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE) HSP 1 Score: 308 bits (788), Expect = 4.450e-92 Identity = 181/246 (73.58%), Postives = 192/246 (78.05%), Query Frame = 1
Query: 28 VTAQARAAGKALLEAEVAAWAAQRARHASGDDKWVEQV------------------LRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSK 711
+T+QARAAGKALLEAEVAAW AQR RHASGDDKWV QV LRGGTLSDKVAALTLQVQESPVHRL+VLDGLLDLGLKKERRTAQMALEALKDLFITNLLPD+R+LV FE+RPL+QALA+V G GQ G S +GV+ P GKAAGKALLMW F R+VGAIEAGSRDTVENFKRFSLEAAKDLLEAKPE EGRLLALLVNKLGDPDRKISSK
Sbjct: 1 MTSQARAAGKALLEAEVAAWTAQRERHASGDDKWVAQVQSLGKHMELRRIVPRTWVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESRPLLQALASVTEEGNKGQGGG-----GESVPEGGRGVNGPRGKAAGKALLMW---------FSRLVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEGEGRLLALLVNKLGDPDRKISSK 232
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA) HSP 1 Score: 229 bits (585), Expect = 9.750e-65 Identity = 145/331 (43.81%), Postives = 189/331 (57.10%), Query Frame = 1
Query: 19 PPAVTAQARAAGKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSR-----------------------DTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKH----PAMKG--------------------------VVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
P V + R A ALL EVAAW + +GDD+++ QVL+ GTLSDK++ALT++ +ESPVHRL+ LD L++L K +RRTAQMA EALKDLFI++LLPD RRLV F RPL+Q + + + A K LLMWYFE ++L R+ +V A++A ++ D+V N KR +EAA+DLLEAKP E +LLA+LVNK GDPDRK+++K IHLLQ L + AM+G VVVREVQQYLHRPGL PKA+YAG++FL+QV
Sbjct: 199 PAEVVRRLRDAAAALLAKEVAAWDHGAEKRQTGDDRYLSQVLKSGTLSDKISALTMRCKESPVHRLADLDKLVELATKHDRRTAQMAQEALKDLFISDLLPDERRLVPFRERPLLQ----------------------------FEEWAPNFKEQAAKTLLMWYFEGELLRRYGALVTALDAATKVRRYLSVLRLGGGWVAALHAATKDSVSNTKRSGMEAARDLLEAKPTGEAQLLAILVNKFGDPDRKVANKGIHLLQHALPQALNELSAMRGIVREQVLNKHXXXXXXXXXXXXXXXXVVVREVQQYLHRPGLAPKALYAGVVFLSQV 501
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVG6_9STRA) HSP 1 Score: 194 bits (494), Expect = 3.670e-57 Identity = 108/258 (41.86%), Postives = 155/258 (60.08%), Query Frame = 1
Query: 85 WAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQVRI 858
W+A+R ++ GD+++++Q+LR GTL+D++AA+TL+VQ+SP+H LS LDGLL LG K R +++A EAL DLF NLLP R+L+A E+RPL+ + A E LMW FE ++ RF + + +D+ + +R L+ A DLL + E EG L++L+VNKLGDPDRKI+S+ + LQ+LL KHP M VVV+ + L R LQP+A Y I+FLNQVR+
Sbjct: 57 WSAKRNANSDGDERFMDQMLRSGTLADRIAAMTLRVQQSPLHELSSLDGLLKLGQKGNHRGSRLAFEALCDLFKENLLPADRQLIALESRPLLSSEATEE------------------------------------HKLMWGFEAELKARFSLFLDQLSLALKDSTTDLRRIGLDCAADLLTHRSEQEGTLMSLVVNKLGDPDRKIASRAVLKLQQLLQKHPNMTKVVVQYTKGLLGRKNLQPRATYNAIVFLNQVRL 278
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YNK8_HAELA) HSP 1 Score: 195 bits (496), Expect = 3.880e-56 Identity = 116/269 (43.12%), Postives = 160/269 (59.48%), Query Frame = 1
Query: 52 GKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKE--RRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
G+ +L E A++ + + + D KW++QV R GT +DKVAA+TLQVQES V L+ LD LL +++ R + ALEAL++LF+T LLPD RRL E++PL S P GK K LL W+ EDQI R+ VGA+E SRD +E K + +A LL KPEAE RLL LVNKLGDP RK++SK +LL +LL++HP MK VV+RE+++++ RPGLQ +A Y ++F+NQ+
Sbjct: 131 GEQMLANEAASFEREMQKRNAADYKWLQQVKRQGTTADKVAAITLQVQESAVANLAGLDMLLGWVTRRQGGREVVRQALEALQELFLTVLLPDGRRLKHLESQPL---------------------------------ASLPSGKEGAKYLLWWFLEDQIKVRYGLFVGALEECSRDNLEFLKDKATKALYTLLVKKPEAEARLLGALVNKLGDPARKLASKAGYLLSQLLLQHPVMKPVVLRELERFVFRPGLQDRARYYAVVFMNQL 366
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW61_9STRA) HSP 1 Score: 201 bits (512), Expect = 4.250e-55 Identity = 119/267 (44.57%), Postives = 157/267 (58.80%), Query Frame = 1
Query: 52 GKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
G+A+L A + A+R+R D KW E++LR GTLSDKVAALTL VQE+P+ RL LD LL L K +RR AQMA+EAL+DL NLLP R+LV + + A G S L + +FEDQ+ R ++ +E + DTV +FKRF+L LL+ +PE E RLL++LVNKLGD ++K++ +LL+RLL HPAMK VV REVQQ+LHRP LQP+ +Y GI FL Q+
Sbjct: 132 GEAVLTAAQTLFEARRSRKLDQDQKWTEKILRQGTLSDKVAALTLLVQEAPLFRLRTLDALLALAQKADRRCAQMAIEALQDLLEHNLLPPERKLVPWARQDEASLPPAAAG-------------------------DSEQRARREACLALRFFEDQLKQRVAVLIDRLEKATHDTVTSFKRFALTGVAGLLQGRPEQEERLLSILVNKLGDVEKKVAPHAAYLLRRLLAAHPAMKVVVAREVQQFLHRPNLQPRPLYNGISFLGQL 373
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXB7_9STRA) HSP 1 Score: 197 bits (502), Expect = 8.100e-54 Identity = 122/281 (43.42%), Postives = 160/281 (56.94%), Query Frame = 1
Query: 10 ATLPPAVTAQARAAGKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
A LP A A+ + LLEAEVA + AQ++ S DDK++ ++R GTL+D+VAALTL VQ +P H L+ L L+ + KK RR + MA+++LKDLFI NLLPD RRL F L A E +W+FE + T F ++VG + +G D V+N KR + AA LL AKPE E LLA+LVNKLGDPDRKI+S V+ LQ LL +HPAMK VVV EV++ L RP + + Y I+FLNQ+
Sbjct: 113 AQLPAAEAEAAKRHAQRLLEAEVARFEAQKSARLSSDDKYLATMMRSGTLADRVAALTLTVQSAPFHNLARLSQLITMASKKARRESMMAVDSLKDLFINNLLPDDRRLRFFHQHALAHPDATDE------------------------------------HRALWFFEHCLKTAFAQLVGVLASGMDDAVDNHKRACIRAASALLAAKPEQEAVLLAMLVNKLGDPDRKIASYVLKTLQELLQEHPAMKRVVVDEVERVLTRPQVSDRTKYNAILFLNQM 357
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein (Fragment) n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D0A4_9CHLO) HSP 1 Score: 191 bits (485), Expect = 2.210e-51 Identity = 115/272 (42.28%), Postives = 156/272 (57.35%), Query Frame = 1
Query: 43 RAAGKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKE--RRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
RAA +AL++AE AA+ + R GD KW++QV R GT +DK+AA TL VQES V + LD L+ L K+ + + ALEAL++LF LLPD R+L E +PL P G+ K LL+W+ ED + R+ V A+E S++ +E K S+ DLL +KPE E RLLA LVNKLGDP R+++SK ++LL +LL HP MK VVVREV++++ RPGL KA Y +IFLNQ+
Sbjct: 215 RAAAEALMDAEAAAFEKEVLRRNPGDAKWLQQVRRAGTSTDKLAAATLLVQESVVSNMKALDQLVSLATKRSGGKELVRQALEALQELFTNALLPD-RKLKFLEQQPLQDL---------------------------------PPGRDGEKLLLLWWTEDCVKRRYAEFVTALEEHSKENLEFLKEKSMRVMADLLSSKPECEARLLAALVNKLGDPSRQVASKAVYLLMQLLSSHPVMKPVVVREVERFVFRPGLADKARYYAVIFLNQI 452
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN86_9STRA) HSP 1 Score: 185 bits (470), Expect = 2.520e-51 Identity = 105/248 (42.34%), Postives = 150/248 (60.48%), Query Frame = 1
Query: 115 GDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQVRI 858
GD KW+ +++ GT+SDKVAA+ L+VQ SP H L LD L+ + LKKE+R+AQ+A+EALKDLF+ NLLP+ R+L A + L A + ALL+W FE Q+ R+ +++ A++AG + V+ FKR L+ +LL KPE E RLL +LVNKLGDP R SK + L+ ++ HPAMK VVVREV+Q+L+RP L+ + ++ GII L+QV++
Sbjct: 79 GDLKWMNDMIKSGTMSDKVAAMALKVQGSPFHELETLDTLIGMALKKEQRSAQLAIEALKDLFVNNLLPE-RQLRAMDNNSLNHANMTLS-----------------------------------TALLVW-FEAQLKNRYAKVLDALDAGLKSNVDFFKRECLQTISELLIGKPEQEARLLEMLVNKLGDPSRATCSKAVEALKTVVRAHPAMKIVVVREVRQFLYRPNLKIRPIFNGIILLSQVQL 289
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GDK0_PHYRM) HSP 1 Score: 190 bits (483), Expect = 2.820e-51 Identity = 111/264 (42.05%), Postives = 156/264 (59.09%), Query Frame = 1
Query: 61 LLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
LLEAEVA + A ++ S DDK++ +++ GTLSD+VAALTL Q SP+H L + L+ + KK RR + MA+++LKDLF+ NLLPDA +L F PL A +A+ L++W+FE + T + ++ G + AG D V++ KR L A+ LL AKPE E LLA+LVNKLGDPDRKI++ + +LQ LL +HPAMK VVV EV++ L RP + +A Y ++FLNQ+
Sbjct: 86 LLEAEVARFDAHKSGKMSSDDKYLATMMKSGTLSDRVAALTLTSQSSPLHSLLRVGQLITMASKKARRESLMAVDSLKDLFLNNLLPDAAKLRFFHQHPLQAA------------------------------------QASPAHLVLWFFEHCLKTAYTQLTGVLAAGMDDAVDSHKRACLRASNALLRAKPEQEAVLLAMLVNKLGDPDRKIAAYLHRMLQDLLREHPAMKRVVVDEVERLLTRPKVSDRAKYNAVLFLNQI 313 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8811.1.2 >prot_H-canaliculatus_M_contigs8811.1.2 ID=prot_H-canaliculatus_M_contigs8811.1.2|Name=mRNA_H-canaliculatus_M_contigs8811.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=286bp GASATLPPAVTAQARAAGKALLEAEVAAWAAQRARHASGDDKWVEQVLRGback to top mRNA from alignment at H-canaliculatus_M_contigs8811:699..4732- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8811.1.2 ID=mRNA_H-canaliculatus_M_contigs8811.1.2|Name=mRNA_H-canaliculatus_M_contigs8811.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4034bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8811:699..4732- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8811:699..4732- >mRNA_H-canaliculatus_M_contigs8811.1.2 ID=mRNA_H-canaliculatus_M_contigs8811.1.2|Name=mRNA_H-canaliculatus_M_contigs8811.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=858bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8811:699..4732- (Hapterophycus canaliculatus Oshoro7m male)back to top |