mRNA_H-canaliculatus_M_contigs8808.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8808.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8808.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH61_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 1.490e-104
Identity = 152/191 (79.58%), Postives = 165/191 (86.39%), Query Frame = 1
Query:    1 LASVSKANLAKLRSIFENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKLVGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFFPAFRLQDSLQKHFLGASFWIKAQEGVLTREGIAEYQATHGG 573
            +  VSKA+LAKLR IFE+IDVG TGTV+C EVLS VG+ QSPFTDNLF+LVGVHP+GSLSFC+LCRILMTYCVFSKE+ILLFLFRQYDTDDSGAIDE EFRELAKTVNNASPMFPGNFAKALLDF               MDKAFPLLFFPAFRLQDSLQK FLG++FW+KAQEGVL R+G AEYQATHGG
Sbjct:   58 ILQVSKAHLAKLRGIFESIDVGNTGTVFCYEVLSAVGIAQSPFTDNLFRLVGVHPEGSLSFCQLCRILMTYCVFSKEDILLFLFRQYDTDDSGAIDESEFRELAKTVNNASPMFPGNFAKALLDFXXXXXXXXXXXXXXAMDKAFPLLFFPAFRLQDSLQKFFLGSTFWVKAQEGVLARQGAAEYQATHGG 248          
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR04_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 1.450e-85
Identity = 133/165 (80.61%), Postives = 141/165 (85.45%), Query Frame = 1
Query:    1 LASVSKANLAKLRSIFENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKLVGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFFPAFRLQDSLQKHFLG 495
            L  VSKA+LAKLR IFE+IDV KTGTV+C EVLS V M QSPFTDNLF+LVGVHP+GSLSFC+LCRILMTYCVFSKE+ILLFLFRQYDTD+SGAIDEREFRELAKTVNNASPMFPGNFAKALLDF               MDKAFPLLFFPAFRLQDSLQK FLG
Sbjct:  144 LLQVSKAHLAKLRGIFESIDVAKTGTVFCYEVLSAVDMAQSPFTDNLFRLVGVHPEGSLSFCQLCRILMTYCVFSKEDILLFLFRQYDTDNSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFXXXXXXXXXXXXXXAMDKAFPLLFFPAFRLQDSLQKFFLG 308          
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE87_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.690e-51
Identity = 80/164 (48.78%), Postives = 112/164 (68.29%), Query Frame = 1
Query:   46 FENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKLVGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFFPAFRLQDSLQKHFLGASFWIKAQEGVLTR 537
            F ++D   TG V C E L  +   ++P T+ +F +VG  P G+L F     +++TYC+F++ +IL F F QYD++++G I+E  F EL  TVNNASP+FPGNF  AL +FD N DGLIDF+EF+ MDK +PLL FP +RLQD++QK  LG S W+K Q+ +  R
Sbjct:    1 FRSLDSDGTGRVDCEEFLWYINAQRTPLTELVFGIVGADPHGALDFSAWLVLVLTYCLFTRAQILQFCFSQYDSNNTGCINEFRFMELLDTVNNASPVFPGNFQLALEEFDQNKDGLIDFNEFKAMDKRYPLLLFPVYRLQDAMQKACLGESAWVKLQQNMYRR 164          
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Match: Aste57867_11925 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA1_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.930e-47
Identity = 74/188 (39.36%), Postives = 122/188 (64.89%), Query Frame = 1
Query:   10 VSKANLAKLRSIFENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKLVGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFFPAFRLQDSLQKHFLGASFWIKAQEGVLTREGIAEYQATHGG 573
            + +A L KL+  F ++D+ + GT+   E    +  T++PF D   K++ ++ DG + F E    L TYC+++++EIL F F  +DTD+SG+IDE EF+ +A  +N+ SP+F  N+ KA+ DFD N+DG++DFDEF++++K +P+LFFP FR+Q+++QK  LG + W++  E          Y+  H G
Sbjct:  135 LGQAELKKLKEAFNHVDMDRAGTIDYDEFFEFIDETRTPFCDKFLKMIDINGDGVIDFEEFVHALTTYCMYTRDEILKFAFECFDTDESGSIDEMEFKIMAGMINDGSPLFRINYEKAMHDFDKNNDGVLDFDEFQLLNKRYPMLFFPCFRMQEAMQKATLGVAHWLRLHERYFEVLKEDAYRKRHAG 322          
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1V8_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.460e-46
Identity = 77/188 (40.96%), Postives = 123/188 (65.43%), Query Frame = 1
Query:    7 SVSKANLAKLRSIFENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKLVGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFFPAFRLQDSLQKHFLGASFWIKAQEGVLTREGIAEYQATHG 570
            ++++ +L  L+  F+ IDV ++G++   E   ++   ++P TD LF L+ +   G++ F E   +L+TYC+++K++IL F F  +D D S +IDE EF  L  TVNN +P+FPGN   AL++FD+N DGLIDF EF+V++  +P++FFPAFRLQD +Q+  LG + W    + V  +    E++ THG
Sbjct:  165 NLTQKDLRHLKREFDEIDVDQSGSMDAVEFFDMLDEERTPLTDELFALMDLDGSGTIEFDEFIAVLLTYCMYTKDDILRFCFDTFDKDKSNSIDENEFMALLSTVNNGAPLFPGNMGTALMNFDSNDDGLIDFQEFKVIETRYPMIFFPAFRLQDRMQQKTLGETRWRDLMKSVQKQRFKNEHRRTHG 352          
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S8V8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 8.910e-46
Identity = 77/191 (40.31%), Postives = 120/191 (62.83%), Query Frame = 1
Query:    1 LASVSKANLAKLRSIFENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKLVGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFFPAFRLQDSLQKHFLGASFWIKAQEGVLTREGIAEYQATHGG 573
            L  ++  ++ KLR+ F+  D   +G +   E   ++   ++ FTD LF L+    +G+++F E+ ++L TYC+FS+E++L F+F  +D D +G++DE+EF  +   VN A  +FPGN  +A   FDTN DG+IDFDEF+ +++ FP+L FPAFRLQD +QK  LG+  W +  +    RE I  Y A H G
Sbjct:  113 LLGITSKDIGKLRTKFDEADTDASGEIEIDEFFKMIDERKTSFTDALFALIDTDQNGTINFDEMMQVLTTYCIFSQEDVLNFVFAYHDRDGTGSLDEKEFINMCVEVN-AEGLFPGNLNRAFRQFDTNDDGMIDFDEFKEINRRFPMLMFPAFRLQDQMQKCTLGSKRWTQILKYKAKRERIEAYMAAHDG 302          
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0P8_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.930e-43
Identity = 72/188 (38.30%), Postives = 116/188 (61.70%), Query Frame = 1
Query:   10 VSKANLAKLRSIFENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKLVGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFFPAFRLQDSLQKHFLGASFWIKAQEGVLTREGIAEYQATHGG 573
            + +A L KL+  F  ID+ K   +   E    +   ++P++++LFK++  + +G + F E    L  YC+F++EEIL F FR +D DDSG IDE EFR+LA+ VN+  P+F GNF KAL DFD  +DG+I F+ F ++++ +P++ FP F+LQ+ +Q+  LG   W++  E         +++  HGG
Sbjct:  107 MGQAELKKLKETFHYIDITKEEEISYEEFFEFIDEHRNPYSESLFKMIDANGNGKIDFEEFVYALTMYCMFTREEILQFAFRTFDQDDSGTIDETEFRKLAEMVNDGKPLFAGNFNKALKDFDKKNDGVITFEGFDLLNRRYPMILFPCFQLQERIQRATLGEKHWLRIHERYYEALKDEQFRRRHGG 294          
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8X3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.420e-42
Identity = 73/189 (38.62%), Postives = 114/189 (60.32%), Query Frame = 1
Query:    7 SVSKANLAKLRSIFENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKLVGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFFPAFRLQDSLQKHFLGASFWIKAQEGVLTREGIAEYQATHGG 573
            +++K  L +LR  ++ IDV  +G++   E+   +    +PFTD LF L+ +   G++ F E  R+L+TYC++SKE+IL F F               F EL + +NNA+PMFPGN++ A+  FD N DGLIDF EF +++  +P++ +PAFRLQ+ + +  LG   W+K +E V   + + EY   HGG
Sbjct:   89 NINKKQLTRLRYNYDEIDVDGSGSIDSIELFEAMEEASTPFTDALFNLMDLDGSGTIEFSEYVRVLVTYCMYSKEDILRFAFDCXXXXXXXXXXXXXFMELCQGINNAAPMFPGNYSTAMKQFDVNDDGLIDFREFSMLNDRYPMVLYPAFRLQEKMWQKTLGERAWVKIREHVERSKRVREYAQIHGG 277          
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTA2_SAPPC)

HSP 1 Score: 153 bits (386), Expect = 2.950e-42
Identity = 76/188 (40.43%), Postives = 112/188 (59.57%), Query Frame = 1
Query:   10 VSKANLAKLRSIFENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKLVGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFFPAFRLQDSLQKHFLGASFWIKAQEGVLTREGIAEYQATHGG 573
            + +  L K R +F++IDV + GT+   E    +   ++ F+DNLF+ +    DG+L F     IL +YC+ S+EEIL F F  +D D SG++DE EF ELAK +++  P+F  NF KAL +FDT+ DG+I F  F+ + K +P+L FPAFRLQD +Q+  LG + W K          +  Y+  H G
Sbjct:  102 LGQVELRKFRELFDHIDVDRAGTIDYDEFFDFIEDRRTKFSDNLFRQIDPKYDGTLDFEHFVHILTSYCMRSREEILQFAFDTFDDDASGSLDELEFMELAKMMHDGKPVFASNFNKALAEFDTHGDGIITFAAFQQISKRYPMLLFPAFRLQDQMQRMSLGLNHWHKIHVRYFDVVSMEAYRKKHNG 289          
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNR4_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.920e-42
Identity = 73/187 (39.04%), Postives = 113/187 (60.43%), Query Frame = 1
Query:   10 VSKANLAKLRSIFENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKLVGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREFRELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFFPAFRLQDSLQKHFLGASFWIKAQEGVLTREGIAEYQATHG 570
            + + +L  +R  F++IDV  +G +   E+   +G  +S  T+ LF ++ +  +  L F E   + ++YC+++K++IL F F  +D D  G IDE+EF E+   V+   P+F GNF  AL +FDTN DGLIDFDEFR ++  +P++  PAFR+QD LQK+ LG   W+K  E +   + I EY    G
Sbjct:  129 LGQRHLRIMRDQFDDIDVDGSGNIDAVELFEAMGEVRSKITEELFAMMDMDGNARLDFDEYVAVALSYCMYTKDDILKFCFDLFDLDSGGTIDEKEFTEMCVAVSAGDPLFSGNFRMALENFDTNDDGLIDFDEFRNLNDRYPMILHPAFRMQDKLQKYTLGEEEWVKVMENINYWQKIKEYTDKEG 315          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8808.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.490e-10479.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.450e-8580.61protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.690e-5148.78protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
Aste57867_119251.930e-4739.36protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Hypothetical2.460e-4640.96protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical8.910e-4640.31protein n=1 Tax=labyrinthulid quahog parasite QPX ... [more]
Uncharacterized2.930e-4338.30protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Hypothetical2.420e-4238.62protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Uncharacterized2.950e-4240.43protein n=1 Tax=Saprolegnia parasitica (strain CBS... [more]
Hypothetical4.920e-4239.04protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8808contigH-canaliculatus_M_contigs8808:289..3511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR04
PFAMsEF-hand_7
Model size573
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.38e-86
EggNOG OGs2DCZ5@1|root,2S5M0@2759|Eukaryota
Cds size573
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.5123112-CDS-H-canaliculatus_M_contigs8808:288..4421696854174.5123112-CDS-H-canaliculatus_M_contigs8808:288..442Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8808 289..442 +
1696854174.523131-CDS-H-canaliculatus_M_contigs8808:793..8831696854174.523131-CDS-H-canaliculatus_M_contigs8808:793..883Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8808 794..883 +
1696854174.5351763-CDS-H-canaliculatus_M_contigs8808:1438..15741696854174.5351763-CDS-H-canaliculatus_M_contigs8808:1438..1574Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8808 1439..1574 +
1696854174.553403-CDS-H-canaliculatus_M_contigs8808:2493..26101696854174.553403-CDS-H-canaliculatus_M_contigs8808:2493..2610Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8808 2494..2610 +
1696854174.565905-CDS-H-canaliculatus_M_contigs8808:3435..35111696854174.565905-CDS-H-canaliculatus_M_contigs8808:3435..3511Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8808 3436..3511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8808.1.1prot_H-canaliculatus_M_contigs8808.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8808 289..3511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8808.1.1

>prot_H-canaliculatus_M_contigs8808.1.1 ID=prot_H-canaliculatus_M_contigs8808.1.1|Name=mRNA_H-canaliculatus_M_contigs8808.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=191bp
LASVSKANLAKLRSIFENIDVGKTGTVYCSEVLSVVGMTQSPFTDNLFKL
VGVHPDGSLSFCELCRILMTYCVFSKEEILLFLFRQYDTDDSGAIDEREF
RELAKTVNNASPMFPGNFAKALLDFDTNSDGLIDFDEFRVMDKAFPLLFF
PAFRLQDSLQKHFLGASFWIKAQEGVLTREGIAEYQATHGG
back to top

mRNA from alignment at H-canaliculatus_M_contigs8808:289..3511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8808.1.1 ID=mRNA_H-canaliculatus_M_contigs8808.1.1|Name=mRNA_H-canaliculatus_M_contigs8808.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3223bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8808:289..3511+ (Hapterophycus canaliculatus Oshoro7m male)
CTTGCTTCAGTTTCGAAGGCAAACCTTGCCAAGCTCCGGAGTATTTTTGA GAACATCGATGTGGGGAAGACAGGCACTGTCTACTGCTCTGAGGTGCTAT CGGTCGTTGGCATGACGCAGTCGCCCTTCACGGACAATTTGTTCAAACTG GTTGGTGAGCGTGCAACAATTCTCGTTGTTGTTGTTGTTGTTGTTGTTGT TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTTTTGCCTCCT TAACCAAGTGCGTCGAACCTTTGACCTCTTCCTCGCGTCGCACCTCGTGC ACAATCCGAGGTCTGCCTCGATTTTCGGAGAACAAGAGAATATAGTCGAC TGCGAAGAGAGCGTACACGTACGCCGATAGTAATTCCCTTCAGTTATGCT GCGCCGTGGGAGGCCAGCGTAAACGAGACATCGCTGTAGATAACGGCGTC GAATCACAAACTACGCTCCCCGCATGACTAAAAGGGGCAAATCCTAACAT CACAGGTGTGCATCCGGACGGTTCGTTGTCTTTCTGTGAGCTCTGTCGCA TCTTGATGACCTACTGCGTCTTCTCCAAGGAGGAAATCTTGCTCTGTGAG TCGACGAAGCAGTTGCCCAGAGTTGTCGCGCGTTGACCTGCACCGGCTGG AAGGTGTGCGGTCTACTTCCCACGGTGAAGCACTCGTCGCTCTCATTCCG ATATTTTCAGTCTGTCCTACCTAATATCCTACTTGACACCTGAGTCGTGG CAAGCACAAATTTATTCGACCAAGCAAATCTGCTGCGCGTCTGGTACTCT TGCGCAGTAATCGCTCGTATTTCGACCACAGCGAGTGCTTTCTACGCCTA TTTTGTGCATCTTCACCCCCTCATCAGTCCTCAAAAGCATTTATTTTCTA TTCGTTCATGAATACTATCACCTCGTCCCGGAATGAAACCGGCTGCGTAA GAACGTCACGATAGCACGGATTACGGTCAGCGGTGCCGCATCGTGCAGCG ACAGGCATCCCAATGTCTTTCTTCTGCTCTCACGCTCCTCGGCGGTGCTC CCACGCTTTCCGCGGGCCTTGTACTCCCTAGAAAAAATCGGACATGAGCT GTTAAGATGTTCCGTCGCCTATTTCTCCCGCCGCTCGTGGCACTGATCAG TCTTGTTCCGGCAGTACGACACGGATGACAGCGGTGCCATCGACGAGCGC GAGTTCCGGGAGCTGGCCAAGACCGTCAACAACGCCTCGCCCATGTTTCC GGGAAACTTCGCCAAGGCGCTGCTCGACTTCGACACGTGAGCCTTGAAGC GCATTTGTCCTGTGCGAATTGGACGCGCATGTGTGTGCGGTGTATCTGCG CCAAGTGTACGTGCGCCAGCGTTGTGGAGTGCCCGCACTTACTGCTGTCT GCCCCCGCTTTCCCCTCCCGCGCAGCCGCCACTCTTTGTTTCCTTGCGTT CCAGTTGTTTCTTGTGTCTCCTTTGTGCCCTGCACGTTTCGCACCGTTGT TGTGGAGGTATGAGCAACAACAATTCGGCCGGACCCTCCGTTACCGTTCT GCGTTGGTGAACGCGTTGGCCGAGGGTGCAGACTAATTTATTCTCAGGCT TGTTCTGCACGCGCCGATCTCTCCGACCGCGTCTGTAGCTTCTGGCGTTT CTGTTGTGCCCCTTGCGTTTCGCGAAAACAGTCAATCGAGCTTCTCTGGT TACCCCTGCCAGTATTCTTGAAGTAGCTGCCGGTCGGACGCCTTCATCGA GCTCCTGGAATCACGAACAACGGTCCATTTCTAAGCACCAGTCCATTCGA GCTTTCTGAACCTCCAGCTCCTTCATCCTGCAGGATGACATTCCTTATTG TTTTGCGGAAGTACTCCCAGCGGGCCGGATTCCCAGCCGCTGATTCTTCG TCACTCTTTGCGTCTTTCCCAGTTTGTGTTGTTTTTTTGTCGTGTTTGCT GTTTATTTGCATCGACACAAAGTAGGACCCGGTTTCCCTGAGCGTTTGAG TCACGTTCGGTTTGAAGCCTGCCCGTCGAAATTTTTTCTTGGACACCGCT GATCGACCTCTTGTGTGCATTTCCCCCCCTTTTTTTTAACTAGTAGCATC TCTCCTCTTCTCTGCACCATTACTGCGCTATCCGATCCTATCGTGAAAGT CTCGTGCTGCCGTCTGACCGTTCTCCTTCTCATCTTCGTCCTTCATGCTC TCCAGCAACTCCGACGGTCTCATCGATTTCGACGAGTTTCGGGTGATGGA CAAGGCGTTTCCTTTGCTGTTCTTTCCAGCCTTCCGGCTTCAAGATTCCC TACAAAAACACTTTTTAGGTGCGTCGTGGCCCGTCAAGTATGCAGGCGGA AGGCGGTTACTGAGAGATGTTGCCGAGCTATTTCGTCCACCGCTCTGCGC ACATGGTGCGGCTACCTTTTCGTGCAATGAATCCCACTGCTCGGTGGATT TGACTCGTCTCCAACACGAGATTTGTACACGGCGTACTTTGGTGTATTAG AGAACGGAGAAGGGAAAAGCTAAGTTAGGGTTGACAGCGATCCAATACGA GCTTGCTGCCTTTCACCTCCAAAAGTCCGCAACGCCAGCCTTCCTGGTGG AAAACTTGTAACGAATCTCGCGCGTCGCGCAGGTCATTCCATTTGTAGCT GACTAACTTTGCATGTAGAAGCAGCATCTGACTGGATTGTTTCGTCCTGT CCGCGCAACAATCACGAAAATTCTGGGTGATGATGAAACATGGTCGAAAA CTCACGGAATATTTCTGTAACGTTTGCGTAGTGTGCCGCAAGACAATCAG GAAGAAGCCGCTGGGCAGGCAGAGTATCCGCGACTGCCTACAAACCCGTG AAAAAGTGTGTTCGCCCAACCGCTCAATCACACTAAGACAGGCTTCACAT AATGTTTTCCAGCCAGGGCACCCGCATCTCCTTTGATCAACGCCAAACCA CCTAGACCCAACGACAGCAGGCAGGCCTTGCAGCCCAGAGCTGCGGCGCA CACTCGTACACAAAGTCTTGCTTTGTTGTACTCTAGACTATGCCAAGACA CCTAGCCCAGCGTCGCGGAAGGAACTCGCCACTCCGCGTAATTTTCGCTT CCTCGACCCGCCTGCGGGGAAATCGTCCGGCCACCAACACCAGGGAGCTC ATTCTGGATCAAGGCGCAAGAAGGCGTCCTAACGCGAGAAGGCATAGCGG AATACCAGGCCACGCACGGAGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8808:289..3511+

>mRNA_H-canaliculatus_M_contigs8808.1.1 ID=mRNA_H-canaliculatus_M_contigs8808.1.1|Name=mRNA_H-canaliculatus_M_contigs8808.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=573bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8808:289..3511+ (Hapterophycus canaliculatus Oshoro7m male)
CTTGCTTCAGTTTCGAAGGCAAACCTTGCCAAGCTCCGGAGTATTTTTGA
GAACATCGATGTGGGGAAGACAGGCACTGTCTACTGCTCTGAGGTGCTAT
CGGTCGTTGGCATGACGCAGTCGCCCTTCACGGACAATTTGTTCAAACTG
GTTGGTGTGCATCCGGACGGTTCGTTGTCTTTCTGTGAGCTCTGTCGCAT
CTTGATGACCTACTGCGTCTTCTCCAAGGAGGAAATCTTGCTCTTCTTGT
TCCGGCAGTACGACACGGATGACAGCGGTGCCATCGACGAGCGCGAGTTC
CGGGAGCTGGCCAAGACCGTCAACAACGCCTCGCCCATGTTTCCGGGAAA
CTTCGCCAAGGCGCTGCTCGACTTCGACACCAACTCCGACGGTCTCATCG
ATTTCGACGAGTTTCGGGTGATGGACAAGGCGTTTCCTTTGCTGTTCTTT
CCAGCCTTCCGGCTTCAAGATTCCCTACAAAAACACTTTTTAGGTGCCTC
ATTCTGGATCAAGGCGCAAGAAGGCGTCCTAACGCGAGAAGGCATAGCGG
AATACCAGGCCACGCACGGAGGG
back to top