mRNA_H-canaliculatus_M_contigs8799.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8799.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8799.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.770e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1
Query:   22 KPVAAMRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIEIAFMFSAYEV 180
            K VA MRNLYTAAMSYNGYT+TDGALRLIVLLHAADLGFNAIEIAFMFSAYEV
Sbjct:   63 KQVAPMRNLYTAAMSYNGYTVTDGALRLIVLLHAADLGFNAIEIAFMFSAYEV 115          
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Match: Putative (membrane transporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK8_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.790e-23
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1
Query:   22 KPVAAMRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIEIAFMFSAYEV 180
            K VA MRNLYTAA+SYNGYT+TDGALRLIVLLHAADLGFNAIEIAFMFSAYEV
Sbjct:   66 KQVAPMRNLYTAALSYNGYTVTDGALRLIVLLHAADLGFNAIEIAFMFSAYEV 118          
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Match: Putative (membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH56_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.710e-14
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   22 KPVAAMRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIEIAFMFSAYEV 180
            K  A +RNLY  AMSYN +T TDGALRL+VLLHA +LGF+AI+IA MFS YEV
Sbjct:   31 KEPAPIRNLYITAMSYNAFTFTDGALRLVVLLHADELGFDAIQIAIMFSLYEV 83          
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Match: Putative (membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.620e-11
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   31 AAMRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIEIAFMFSAYE 177
            A +RNLY  + SY G+T+TDGALRL+VLL+A  LGF+AI+IA MFS YE
Sbjct:   39 APVRNLYVTSTSYVGFTLTDGALRLVVLLYADSLGFDAIQIAIMFSLYE 87          
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GYA8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.870e-11
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   37 MRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIEIAFMFSAYEV 180
            +RNLY    S+N +TITDGA+RL+VLLHAA LGF+ I+IA MF+ YE+
Sbjct:   99 IRNLYVTVYSFNLFTITDGAIRLVVLLHAAALGFSPIQIAIMFTLYEL 146          
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WN85_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.600e-8
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   28 VAAMRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIEIAFMFSAYEV 180
            V  MRN Y    S+N +T+TDGA+R+IVLLHA  L F  I IA MF+ YE+
Sbjct:   73 VLPMRNFYATVYSFNMFTVTDGAIRVIVLLHANALNFTPIAIALMFTLYEL 123          
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Match: Permease (of the major facilitator superfamily n=3 Tax=Geminocystis TaxID=669357 RepID=A0A0D6AIF3_9CHRO)

HSP 1 Score: 58.2 bits (139), Expect = 2.160e-8
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   37 MRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIEIAFMFSAYEV 180
            +RN      +Y GYTITDGALR++VLLH   LGF  IEIAF+F  YE+
Sbjct:    5 LRNYALVTSAYWGYTITDGALRMLVLLHFNKLGFTPIEIAFLFLFYEI 52          
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Match: Major (facilitator superfamily MFS_1 n=4 Tax=Cyanobacterium TaxID=102234 RepID=K9YKV9_CYASC)

HSP 1 Score: 57.4 bits (137), Expect = 4.040e-8
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   37 MRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIEIAFMFSAYEV 180
            ++N      +Y GYTITDGALR++VLLH   LGF  IEIAF+F  YE+
Sbjct:    5 LKNYCLVTAAYWGYTITDGALRMLVLLHFNQLGFTPIEIAFLFLFYEI 52          
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Match: Major (facilitator transporter n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X352_CAPO3)

HSP 1 Score: 57.4 bits (137), Expect = 4.070e-8
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   25 PVAAMRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIEIAFMFSAYEV 180
            P  ++R  Y  ++SY  +T+TDGALR+IVL+ A D+GF+A EIA MF  YE+
Sbjct:   30 PSPSLRPFYVISLSYLLFTLTDGALRMIVLMQANDIGFSAFEIALMFVLYEL 81          
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Match: MFS (transporter n=1 Tax=Desulfuromonas sp. TaxID=892 RepID=A0A2J6J2Z3_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 5.530e-8
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   37 MRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIEIAFMFSAYE 177
            ++N      +Y G+T+TDGALR++VLLH  DLGF+A++IAF+F  YE
Sbjct:    4 IKNYSLVTTAYWGFTLTDGALRMLVLLHFHDLGFSAVQIAFLFLLYE 50          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8799.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.770e-2394.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative8.790e-2392.45membrane transporter (ISS) n=1 Tax=Ectocarpus sili... [more]
Putative1.710e-1469.81membrane transporter n=1 Tax=Tribonema minus TaxID... [more]
Putative1.620e-1165.31membrane transporter n=1 Tax=Tribonema minus TaxID... [more]
Uncharacterized7.870e-1162.50protein n=1 Tax=Hondaea fermentalgiana TaxID=23152... [more]
Hypothetical1.600e-854.90protein n=1 Tax=labyrinthulid quahog parasite QPX ... [more]
Permease2.160e-858.33of the major facilitator superfamily n=3 Tax=Gemin... [more]
Major4.040e-856.25facilitator superfamily MFS_1 n=4 Tax=Cyanobacteri... [more]
Major4.070e-851.92facilitator transporter n=1 Tax=Capsaspora owczarz... [more]
MFS5.530e-853.19transporter n=1 Tax=Desulfuromonas sp. TaxID=892 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8799contigH-canaliculatus_M_contigs8799:4482..4827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPK8
PFAMsMFS_1
Model size180
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.44e-23
EggNOG OGs2CMXH@1|root,2QSJF@2759|Eukaryota
DescriptionMajor Facilitator
Cds size180
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854173.9722884-CDS-H-canaliculatus_M_contigs8799:4481..46151696854173.9722884-CDS-H-canaliculatus_M_contigs8799:4481..4615Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8799 4482..4615 +
1696854173.9833343-CDS-H-canaliculatus_M_contigs8799:4781..48271696854173.9833343-CDS-H-canaliculatus_M_contigs8799:4781..4827Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8799 4782..4827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8799.2.1prot_H-canaliculatus_M_contigs8799.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8799 4482..4827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8799.2.1

>prot_H-canaliculatus_M_contigs8799.2.1 ID=prot_H-canaliculatus_M_contigs8799.2.1|Name=mRNA_H-canaliculatus_M_contigs8799.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=60bp
PAKSSTPKPVAAMRNLYTAAMSYNGYTITDGALRLIVLLHAADLGFNAIE
IAFMFSAYEV
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mRNA from alignment at H-canaliculatus_M_contigs8799:4482..4827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8799.2.1 ID=mRNA_H-canaliculatus_M_contigs8799.2.1|Name=mRNA_H-canaliculatus_M_contigs8799.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=346bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8799:4482..4827+ (Hapterophycus canaliculatus Oshoro7m male)
CCTGCCAAGTCATCAACACCAAAGCCGGTGGCGGCGATGCGAAATCTGTA CACGGCGGCCATGTCCTACAACGGGTACACCATCACGGACGGCGCCTTGA GACTCATCGTGTTGCTGCACGCAGCCGATCTCGGGTAGGTGGAGCGTGGA GGCGCTGTTGCACTTTCCCGCTGATCTCCACATGTCATTCGTCTATCTTG TTCGTTAAATAACACAGGATTTCAAATCGTTTCGCACCAACGAGACCCGG CACCAACTCGATCTCGTCCTGTATCGATCCGTGTTCTTTTACCTCGACAG GTTCAATGCCATCGAGATTGCCTTCATGTTCAGCGCATATGAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8799:4482..4827+

>mRNA_H-canaliculatus_M_contigs8799.2.1 ID=mRNA_H-canaliculatus_M_contigs8799.2.1|Name=mRNA_H-canaliculatus_M_contigs8799.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8799:4482..4827+ (Hapterophycus canaliculatus Oshoro7m male)
CCTGCCAAGTCATCAACACCAAAGCCGGTGGCGGCGATGCGAAATCTGTA
CACGGCGGCCATGTCCTACAACGGGTACACCATCACGGACGGCGCCTTGA
GACTCATCGTGTTGCTGCACGCAGCCGATCTCGGGTTCAATGCCATCGAG
ATTGCCTTCATGTTCAGCGCATATGAGGTG
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