mRNA_H-canaliculatus_M_contigs8798.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8798.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8798.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Peptide (n-glycanase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH8_ECTSI)

HSP 1 Score: 452 bits (1163), Expect = 5.490e-146
Identity = 235/305 (77.05%), Postives = 261/305 (85.57%), Query Frame = 1
Query:    1 MSVREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAASAAGGPVMIKLHFEREKPRESGEGFILVADETELEVYASEGLEFFKFQVLSLTDIETDDQSLTAGDSATPIANDADLTAALRRTGGGVYGNYPIIRVSKRAAGTGGAARVDAPPVAQKAAAAEQQGVTAPPDLESCCSRTF---FGKRAIIQPAYVIREESLLPH--LTDLQKKKAGPEAILVVCKACAENCFVPGR 900
            MSVREVSSAEFY+LSRR+EGKLLVTQFTATWCGPCRR+APQ++ALARRMPEVEFVKVYEHNSRDAI+ASGVRSFPTFHFY+GGAKVDECRGANIAQVEQK+NQH AAAS+AGGPVM+KL FEREKPRESGEGFILVA ET++EV+A+EGLE FKFQVLSLTDIE ++QSL AG+S TPI +DADLTAALR+TGGGVYGNYP+IRVSKR+     AAR  A                +  D E CCSRTF   FG R +IQPAYVIREE+LLP   L+ LQKKKAGPEAIL+VCKACAENCFVPGR
Sbjct:    1 MSVREVSSAEFYQLSRRAEGKLLVTQFTATWCGPCRRIAPQYEALARRMPEVEFVKVYEHNSRDAIIASGVRSFPTFHFYVGGAKVDECRGANIAQVEQKANQHQAAASSAGGPVMVKLRFEREKPRESGEGFILVAQETDVEVHAAEGLEIFKFQVLSLTDIEAEEQSLAAGNSNTPIDSDADLTAALRKTGGGVYGNYPVIRVSKRSK----AARGGAXXXXXXXXXXXXXXXASKVDWEGCCSRTFYGFFGGRPVIQPAYVIREETLLPEGDLSPLQKKKAGPEAILLVCKACAENCFVPGR 301          
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Putative (peptide n-glycanase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB71_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.000e-51
Identity = 119/261 (45.59%), Postives = 156/261 (59.77%), Query Frame = 1
Query:  133 LARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAASAAG-GPVMIKLHFEREKPRESGEGFILVADETELEVYASEGLEFFKFQVLSLTDIETDDQSLTAGDSATPIA--NDADLTAALRRTGGGVYGNYPIIRVSKRAAGTGGAARVDAPP----VAQKAAAAEQQGVTAPPDLESCCSRTFFGKRAIIQPAYVIREESLLPHLTDLQKKKAGPEAILVVCKACAENCFVP 894
            +A + PE  + KV+EH  R+ IM+ GVRSFPTFHFY+ G KVDE  GA   Q+EQK    ++ A     GPV +K+ F RE+ RESG G ILV++E ELEV  S+GL+  +FQ+LS+TDIE D+Q +T G    P++  +DADL  AL   GGG+YGNYP++RV K     G A     PP     AQ A+AA  +          CCS  FFG  A++QPA+ +RE +        QK  A   A+ +VC ACA  CF P
Sbjct:    1 MAAKYPEAIWCKVWEHQCRELIMSCGVRSFPTFHFYVSGNKVDEMSGARGQQLEQKVQHWLSVAGPQRTGPVTVKVKFVRERVRESGTGKILVSEEAELEVDPSDGLDVLQFQILSITDIEVDEQLITGGPDDQPVSVRSDADLKKALSLGGGGMYGNYPVLRVKK-----GQAPPPYVPPPSYGTAQLASAAAWR---------DCCSAVFFGDEALLQPAWQVREAA------GEQKDDA---ALHLVCHACASRCFGP 238          
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV36_HETAK)

HSP 1 Score: 114 bits (285), Expect = 5.490e-27
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    7 VREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAASAAG 336
            V EV+  E +     +  KL V  FTATWCGPC+RVAP +++L+ + P+V F+KV E   +D I   G+R+FPTF FYLGG +VDE +GA+I  VEQK   H    + AG
Sbjct:   91 VHEVTGTEDFRQQLSAPNKLCVVDFTATWCGPCKRVAPMYESLSHKYPDVNFIKVVESTCQDLITQLGIRAFPTFRFYLGGQQVDEVQGADIGAVEQKVLAHRPQQAFAG 200          
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: PUB (domain, zinc finger protein thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z023_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.350e-24
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    7 VREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMA 318
            V EV   E +    + +GKL+V   +ATWCGPC+RVAP++DAL+ + P+V F+KV E  ++D IM  GV +FPTF FY+ GAKVDE +GANIA VE+   +H A
Sbjct:    2 VHEVVGQEEFARLTQQKGKLVVVDVSATWCGPCKRVAPEYDALSGKYPDVVFLKVMEGENQDLIMTLGVTAFPTFLFYVDGAKVDEVKGANIAAVEECVVRHRA 105          
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: PUB (domain, zinc finger protein Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G613_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.810e-23
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    7 VREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMA 318
            V+EV+    +      +GKL+V  FTA+WCGPC+RVAPQ++ LA + P+V F+KV E ++++ I +  +R+FPTF FYL G +VDE RGANI +V  K  QH A
Sbjct:    2 VQEVAGESEFRRLTGQKGKLVVVDFTASWCGPCKRVAPQYEQLASQHPDVLFLKVVEDSNKELIQSLSIRAFPTFRFYLEGNQVDETRGANIQEVASKVVQHKA 105          
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D704_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.700e-22
Identity = 55/114 (48.25%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    7 VREVSSAEFYELSRR-SEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAASAAGGPV 345
            V+E++S    EL R    G+L+V  FTA+WCGPCR  APQF+A+ARR P+V F KV E NS+D I + G+++FPTF  YL    ++E RGAN+  +E    +H A+A    GPV
Sbjct:    2 VQEITSGA--ELRRMVGSGRLVVIDFTASWCGPCRMAAPQFEAMARRYPDVVFAKVVEDNSKDIIASEGIQAFPTFRVYLNSQMLEEFRGANMGALEAAVQRHQASA----GPV 109          
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Thioredoxin (n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IHX1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.250e-21
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   28 EFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQH 312
            E+  L   S+ KL+V  FTA+WCGPC+ +AP F+ +A   P++ FVKV   ++ D   A G+ + PTF FY GG +VDE RGAN +Q+E    +H
Sbjct:    9 EWSALMEESKSKLVVVDFTASWCGPCQMIAPVFEKMASENPDITFVKVDVDDAEDIAAACGISAMPTFQFYKGGTRVDEFRGANTSQLEALVAKH 103          
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CIZ3_9FUNG)

HSP 1 Score: 96.7 bits (239), Expect = 9.680e-21
Identity = 52/135 (38.52%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    1 MSVREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAAS------AAGGPVMIKLHFEREKPRES 387
            M++  +SS   +  S+ SE KL VT+FTA WCGPC+ VAP+F+ALA +   V F++V     +D   +SG+R+ PTF F+  G K+ E  GA+IA+VE+ ++Q+ + ++        GG    K +     PR S
Sbjct:    1 MTITHISSLSQFN-SKISESKLTVTKFTAVWCGPCKAVAPRFEALANQTTNVNFLEVDVDQQKDVAASSGIRAMPTFVFHKNGKKLAEVVGADIAKVERLTSQYGSPSTFTGSGHVLGGNSAAKSNASASSPRSS 134          
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Thioredoxin (n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DAR8_EMIHU)

HSP 1 Score: 94.0 bits (232), Expect = 1.240e-20
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   61 KLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMA 318
            +L+V  FTA+WCGPCRR+AP F +LA+ MPEV+FVKV    ++D     GVR+ PTF FY  G+K+ E  GAN A +     QH A
Sbjct:    7 RLVVVDFTASWCGPCRRIAPVFASLAQEMPEVDFVKVDVDEAQDVAQMCGVRAMPTFQFYRRGSKLGEVSGANEAALRAAIAQHRA 92          
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: PITH (domain-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H2C2_SYNRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.520e-20
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 MSVREVSS-AEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAASAAG 336
            M V+ ++S AEF +L   S  KL+V  F ATWCGPCR +AP  + L+ +   V+F KV     RD   A G+ + PTF F+ GG KVDE +GA+   +EQK   H     AAG
Sbjct:    1 MPVKPITSTAEFQQLMTESNEKLVVVDFFATWCGPCRMIAPFIEQLSSKHSNVQFAKVDVDQLRDVASACGISAMPTFQFFKGGKKVDEIKGASAGAIEQKILVHKVDGGAAG 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptide5.490e-14677.05n-glycanase, putative n=2 Tax=Ectocarpus TaxID=287... [more]
Putative3.000e-5145.59peptide n-glycanase n=1 Tax=Tribonema minus TaxID=... [more]
Hypothetical5.490e-2748.18protein (Fragment) n=2 Tax=Heterosigma akashiwo Ta... [more]
PUB4.350e-2451.92domain, zinc finger protein thioredoxin n=1 Tax=Tr... [more]
PUB3.810e-2349.04domain, zinc finger protein Thioredoxin n=1 Tax=Ec... [more]
Uncharacterized1.700e-2248.25protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Thioredoxin3.250e-2145.26n=1 Tax=Minutocellus polymorphus TaxID=265543 RepI... [more]
Thioredoxin9.680e-2138.52domain-containing protein n=1 Tax=Synchytrium endo... [more]
Thioredoxin1.240e-2051.16n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DAR8_... [more]
PITH2.520e-2044.25domain-domain-containing protein n=1 Tax=Syncephal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8798contigH-canaliculatus_M_contigs8798:325..2549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKH8
Preferred namePNG1
PFAMsPUL,Peptidase_C97,Rad4,Thioredoxin,Transglut_core
Model size915
Max annot lvl2759|Eukaryota
KEGG koko:K01456,ko:K03671
KEGG Pathwayko04141,ko04621,ko05418,map04141,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000224,GO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006056,GO:0006058,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009636,GO:0009719,GO:0009725,GO:0009751,GO:0009987,GO:0010033,GO:0010035,GO:0010188,GO:0010193,GO:0010243,GO:0010498,GO:0014070,GO:0016787,GO:0016810,GO:0016811,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0033554,GO:0034976,GO:0035966,GO:0035967,GO:0035977,GO:0036211,GO:0036503,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046872,GO:0050896,GO:0051603,GO:0051716,GO:0051787,GO:0051788,GO:0070887,GO:0071218,GO:0071310,GO:0071704,GO:0071712,GO:0097466,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1904587
Exons5
Evalue9e-147
EggNOG OGsKOG0908@1|root,KOG0909@1|root,KOG0908@2759|Eukaryota,KOG0909@2759|Eukaryota
EC3.5.1.52
DescriptionSpecifically deglycosylates the denatured form of N- linked glycoproteins in the cytoplasm and assists their proteasome-mediated degradation. Cleaves the beta-aspartyl- glucosamine (GlcNAc) of the glycan and the amide side chain of Asn, converting Asn to Asp. Prefers proteins containing high- mannose over those bearing complex type oligosaccharides. Can recognize misfolded proteins in the endoplasmic reticulum that are exported to the cytosol to be destroyed and deglycosylate them, while it has no activity toward native proteins. Deglycosylation is a prerequisite for subsequent proteasome-mediated degradation of some, but not all, misfolded glycoproteins
Cds size915
COG categoryT
BRITEko00000,ko00001,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854173.8882601-CDS-H-canaliculatus_M_contigs8798:324..4961696854173.8882601-CDS-H-canaliculatus_M_contigs8798:324..496Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8798 325..496 -
1696854173.9088674-CDS-H-canaliculatus_M_contigs8798:663..9381696854173.9088674-CDS-H-canaliculatus_M_contigs8798:663..938Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8798 664..938 -
1696854173.9245148-CDS-H-canaliculatus_M_contigs8798:1406..15481696854173.9245148-CDS-H-canaliculatus_M_contigs8798:1406..1548Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8798 1407..1548 -
1696854173.934848-CDS-H-canaliculatus_M_contigs8798:1907..20651696854173.934848-CDS-H-canaliculatus_M_contigs8798:1907..2065Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8798 1908..2065 -
1696854173.9449131-CDS-H-canaliculatus_M_contigs8798:2381..25491696854173.9449131-CDS-H-canaliculatus_M_contigs8798:2381..2549Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8798 2382..2549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8798.1.1prot_H-canaliculatus_M_contigs8798.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8798 325..2549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8798.1.1

>prot_H-canaliculatus_M_contigs8798.1.1 ID=prot_H-canaliculatus_M_contigs8798.1.1|Name=mRNA_H-canaliculatus_M_contigs8798.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=305bp
MSVREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMP
EVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQK
SNQHMAAASAAGGPVMIKLHFEREKPRESGEGFILVADETELEVYASEGL
EFFKFQVLSLTDIETDDQSLTAGDSATPIANDADLTAALRRTGGGVYGNY
PIIRVSKRAAGTGGAARVDAPPVAQKAAAAEQQGVTAPPDLESCCSRTFF
GKRAIIQPAYVIREESLLPHLTDLQKKKAGPEAILVVCKACAENCFVPGR
VRSR*
back to top

mRNA from alignment at H-canaliculatus_M_contigs8798:325..2549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8798.1.1 ID=mRNA_H-canaliculatus_M_contigs8798.1.1|Name=mRNA_H-canaliculatus_M_contigs8798.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8798:325..2549- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGGTCAGAGAAGTTTCTAGCGCCGAGTTCTACGAGCTGTCCCGGAG ATCGGAAGGGAAGCTCTTGGTCACTCAGTTCACTGCAACCTGGTGCGGAC CTTGCAGGCGGGTCGCCCCCCAGTTCGACGCGCTCGCCAGGCGGATGCCC GAGGTCGAGTTCGTCAAGGTTTGTGTAAATCTCTCCTCTCTCTCCCTCTT CTGCTCCGTGTCTTGACACCCCAAGCAGTCATCGCCGTCTGCCAATTTCC GGCGGACCGCGTCGATGTTGAATGCCGGTCCAACAATCACCCGTCCACAG CTGGACGACTGTCGGCATCATCGTCGGCTGAAGGAAAAACGTTGACCGAA TGTTCCACGACGTTTTTTCTGCCTCCCCTTTATTTGCGTGAGGGTGCGGC CTGGTGCACAAATCCGATCGTCGCTGGTTCTGTTGACAAATACGCACTCA GCGGAGGTTTGGTCTTTCATTTTGTTTGTTTCAGGTGTACGAGCACAACA GCCGCGATGCCATCATGGCTTCGGGCGTGCGTTCGTTTCCGACGTTCCAC TTCTACCTCGGCGGCGCCAAAGTGGACGAGTGCCGCGGGGCGAACATCGC ACAAGTCGAGCAAAAATCAAACCAGCACATGGCGGCCGCAAGGTGTGTGT TCGTTTGGGCCTGACGCTGGTGTACGTACTAGGTGTTTTGCCTCCCGGCG GACAGCTCAGGTCAGGGAGCTCGGCCTCTTGGCTTCCCACGAACGTCGAC ATGACCAAGCCTTGCGCCTTGGGTTTCTTGTCGTAGCGTTGCTCTTGTAG ATTGCTCCCCTACGGTTTCCGACGGCAGTGGCGGTCATATCCTGTGGTGT TAGTGGCAGGAGCGGCAGTCGTTCCTGCTGGTGCAAGTTGTCTCCAGCAG CAGCGGCAGCAGGGAGAATAGCACGCCCCTCCTCCTCCTCCCCACGAAGC AACACCGATCATTGCCACGCCGCGTTCGATTTGAACCCGGAAACCCCGCA GCGCCGCAGGCGGTCCTGTCATGATCAAGCTGCACTTCGAACGAGAGAAG CCGAGGGAGAGTGGGGAAGGCTTCATCCTCGTGGCGGACGAAACGGAGCT TGAGGTGTACGCCTCGGAAGGGTTGGAATTCTTCAAGTTTCAGGTGAGTG AATTGCTCCCCTCGGTCGCGGTCGCCGAGAGAGCGCCGTGCTTTTGCGTC TGGGCTTCTAGCCCGGGGCTGTCGAACTGTTCGAGAGAACGTCTGCTACT ACCGCAGTTGGGTTTTCAAGTGTGAGTTGCACCACTTCCGCACAAGGGAT CCTTCCGAACGCCTCGGAAACCACGCGCGACGATGTCGTCGGAACAACTG TACCGTCGTCTTGCCACAAGAGCGAACCTATTCTTGGCAGGCCTCGGCTC CACGATCCAAGCTTGACACGATGCGAGGGAGTATTGGTGGTGATGCCCGT ACAGCAGCCCGCCCCCTCCTTGTGCGGCAGCGTCCCCCCATATCAAGCAC GAGTGTTCAAGGAGACCGCCTGCTGGGGCCCAGGGGATGGTTTACGTTCC ATAAAGGCCTCAGTTGTCATCCCGCCTACGCTCACCTGCCGCCGGCGACA CGATTGTTCAGGTGCTTTCGCTGACCGACATCGAAACCGATGACCAAAGC CTCACCGCAGGCGACTCGGCCACGCCGATCGCCAACGACGCTGACCTAAC GGCCGCCCTGCGAAGAACAGGCGGCGGGGTGTACGGGAACTACCCCATCA TACGTGTGTCCAAGCGCGCCGCCGGCACAGGGGGGGCAGCAAGAGTGGAC GCCCCCCCCGTCGCGCAGAAAGCTGCGGCTGCGGAGCAGCAAGGGGTAAC CGCTCCGCCCGACTTGGAGAGCTGCTGCTCCCGAACGTGAGCGATCACAG CGAAAGGCGTCTGTAGCGCTCTTGTCTCAACAGTGTTTTTTTCTTTTTCT TTTTCTATGCCCAGTGTCGACGGTGGTGTAATCCTCTTAGCATCTCGGCC GAAAATAATCGCCGGTTTTTCGTTTTCCTTTTCGTGCCCTCCGTCGACAA CAGCTTCTTCGGGAAGAGGGCCATCATACAGCCAGCGTACGTCATCCGTG AGGAGTCTCTGCTGCCGCACCTCACGGACCTGCAGAAGAAGAAGGCCGGG CCCGAGGCTATCCTTGTCGTGTGCAAGGCCTGCGCGGAGAACTGCTTTGT GCCCGGCAGGGTGAGGTCTCGCTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8798:325..2549-

>mRNA_H-canaliculatus_M_contigs8798.1.1 ID=mRNA_H-canaliculatus_M_contigs8798.1.1|Name=mRNA_H-canaliculatus_M_contigs8798.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=915bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8798:325..2549- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGGTCAGAGAAGTTTCTAGCGCCGAGTTCTACGAGCTGTCCCGGAG
ATCGGAAGGGAAGCTCTTGGTCACTCAGTTCACTGCAACCTGGTGCGGAC
CTTGCAGGCGGGTCGCCCCCCAGTTCGACGCGCTCGCCAGGCGGATGCCC
GAGGTCGAGTTCGTCAAGGTGTACGAGCACAACAGCCGCGATGCCATCAT
GGCTTCGGGCGTGCGTTCGTTTCCGACGTTCCACTTCTACCTCGGCGGCG
CCAAAGTGGACGAGTGCCGCGGGGCGAACATCGCACAAGTCGAGCAAAAA
TCAAACCAGCACATGGCGGCCGCAAGCGCCGCAGGCGGTCCTGTCATGAT
CAAGCTGCACTTCGAACGAGAGAAGCCGAGGGAGAGTGGGGAAGGCTTCA
TCCTCGTGGCGGACGAAACGGAGCTTGAGGTGTACGCCTCGGAAGGGTTG
GAATTCTTCAAGTTTCAGGTGCTTTCGCTGACCGACATCGAAACCGATGA
CCAAAGCCTCACCGCAGGCGACTCGGCCACGCCGATCGCCAACGACGCTG
ACCTAACGGCCGCCCTGCGAAGAACAGGCGGCGGGGTGTACGGGAACTAC
CCCATCATACGTGTGTCCAAGCGCGCCGCCGGCACAGGGGGGGCAGCAAG
AGTGGACGCCCCCCCCGTCGCGCAGAAAGCTGCGGCTGCGGAGCAGCAAG
GGGTAACCGCTCCGCCCGACTTGGAGAGCTGCTGCTCCCGAACCTTCTTC
GGGAAGAGGGCCATCATACAGCCAGCGTACGTCATCCGTGAGGAGTCTCT
GCTGCCGCACCTCACGGACCTGCAGAAGAAGAAGGCCGGGCCCGAGGCTA
TCCTTGTCGTGTGCAAGGCCTGCGCGGAGAACTGCTTTGTGCCCGGCAGG
GTGAGGTCTCGCTGA
back to top