mRNA_H-canaliculatus_M_contigs8798.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Peptide (n-glycanase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH8_ECTSI) HSP 1 Score: 452 bits (1163), Expect = 5.490e-146 Identity = 235/305 (77.05%), Postives = 261/305 (85.57%), Query Frame = 1
Query: 1 MSVREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAASAAGGPVMIKLHFEREKPRESGEGFILVADETELEVYASEGLEFFKFQVLSLTDIETDDQSLTAGDSATPIANDADLTAALRRTGGGVYGNYPIIRVSKRAAGTGGAARVDAPPVAQKAAAAEQQGVTAPPDLESCCSRTF---FGKRAIIQPAYVIREESLLPH--LTDLQKKKAGPEAILVVCKACAENCFVPGR 900
MSVREVSSAEFY+LSRR+EGKLLVTQFTATWCGPCRR+APQ++ALARRMPEVEFVKVYEHNSRDAI+ASGVRSFPTFHFY+GGAKVDECRGANIAQVEQK+NQH AAAS+AGGPVM+KL FEREKPRESGEGFILVA ET++EV+A+EGLE FKFQVLSLTDIE ++QSL AG+S TPI +DADLTAALR+TGGGVYGNYP+IRVSKR+ AAR A + D E CCSRTF FG R +IQPAYVIREE+LLP L+ LQKKKAGPEAIL+VCKACAENCFVPGR
Sbjct: 1 MSVREVSSAEFYQLSRRAEGKLLVTQFTATWCGPCRRIAPQYEALARRMPEVEFVKVYEHNSRDAIIASGVRSFPTFHFYVGGAKVDECRGANIAQVEQKANQHQAAASSAGGPVMVKLRFEREKPRESGEGFILVAQETDVEVHAAEGLEIFKFQVLSLTDIEAEEQSLAAGNSNTPIDSDADLTAALRKTGGGVYGNYPVIRVSKRSK----AARGGAXXXXXXXXXXXXXXXASKVDWEGCCSRTFYGFFGGRPVIQPAYVIREETLLPEGDLSPLQKKKAGPEAILLVCKACAENCFVPGR 301
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Putative (peptide n-glycanase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB71_9STRA) HSP 1 Score: 191 bits (486), Expect = 3.000e-51 Identity = 119/261 (45.59%), Postives = 156/261 (59.77%), Query Frame = 1
Query: 133 LARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAASAAG-GPVMIKLHFEREKPRESGEGFILVADETELEVYASEGLEFFKFQVLSLTDIETDDQSLTAGDSATPIA--NDADLTAALRRTGGGVYGNYPIIRVSKRAAGTGGAARVDAPP----VAQKAAAAEQQGVTAPPDLESCCSRTFFGKRAIIQPAYVIREESLLPHLTDLQKKKAGPEAILVVCKACAENCFVP 894
+A + PE + KV+EH R+ IM+ GVRSFPTFHFY+ G KVDE GA Q+EQK ++ A GPV +K+ F RE+ RESG G ILV++E ELEV S+GL+ +FQ+LS+TDIE D+Q +T G P++ +DADL AL GGG+YGNYP++RV K G A PP AQ A+AA + CCS FFG A++QPA+ +RE + QK A A+ +VC ACA CF P
Sbjct: 1 MAAKYPEAIWCKVWEHQCRELIMSCGVRSFPTFHFYVSGNKVDEMSGARGQQLEQKVQHWLSVAGPQRTGPVTVKVKFVRERVRESGTGKILVSEEAELEVDPSDGLDVLQFQILSITDIEVDEQLITGGPDDQPVSVRSDADLKKALSLGGGGMYGNYPVLRVKK-----GQAPPPYVPPPSYGTAQLASAAAWR---------DCCSAVFFGDEALLQPAWQVREAA------GEQKDDA---ALHLVCHACASRCFGP 238
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV36_HETAK) HSP 1 Score: 114 bits (285), Expect = 5.490e-27 Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 1
Query: 7 VREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAASAAG 336
V EV+ E + + KL V FTATWCGPC+RVAP +++L+ + P+V F+KV E +D I G+R+FPTF FYLGG +VDE +GA+I VEQK H + AG
Sbjct: 91 VHEVTGTEDFRQQLSAPNKLCVVDFTATWCGPCKRVAPMYESLSHKYPDVNFIKVVESTCQDLITQLGIRAFPTFRFYLGGQQVDEVQGADIGAVEQKVLAHRPQQAFAG 200
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: PUB (domain, zinc finger protein thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z023_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.350e-24 Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query: 7 VREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMA 318
V EV E + + +GKL+V +ATWCGPC+RVAP++DAL+ + P+V F+KV E ++D IM GV +FPTF FY+ GAKVDE +GANIA VE+ +H A
Sbjct: 2 VHEVVGQEEFARLTQQKGKLVVVDVSATWCGPCKRVAPEYDALSGKYPDVVFLKVMEGENQDLIMTLGVTAFPTFLFYVDGAKVDEVKGANIAAVEECVVRHRA 105
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: PUB (domain, zinc finger protein Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G613_ECTSI) HSP 1 Score: 109 bits (273), Expect = 3.810e-23 Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1
Query: 7 VREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMA 318
V+EV+ + +GKL+V FTA+WCGPC+RVAPQ++ LA + P+V F+KV E ++++ I + +R+FPTF FYL G +VDE RGANI +V K QH A
Sbjct: 2 VQEVAGESEFRRLTGQKGKLVVVDFTASWCGPCKRVAPQYEQLASQHPDVLFLKVVEDSNKELIQSLSIRAFPTFRFYLEGNQVDETRGANIQEVASKVVQHKA 105
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D704_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.700e-22 Identity = 55/114 (48.25%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 7 VREVSSAEFYELSRR-SEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAASAAGGPV 345
V+E++S EL R G+L+V FTA+WCGPCR APQF+A+ARR P+V F KV E NS+D I + G+++FPTF YL ++E RGAN+ +E +H A+A GPV
Sbjct: 2 VQEITSGA--ELRRMVGSGRLVVIDFTASWCGPCRMAAPQFEAMARRYPDVVFAKVVEDNSKDIIASEGIQAFPTFRVYLNSQMLEEFRGANMGALEAAVQRHQASA----GPV 109
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Thioredoxin (n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IHX1_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 3.250e-21 Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 28 EFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQH 312
E+ L S+ KL+V FTA+WCGPC+ +AP F+ +A P++ FVKV ++ D A G+ + PTF FY GG +VDE RGAN +Q+E +H
Sbjct: 9 EWSALMEESKSKLVVVDFTASWCGPCQMIAPVFEKMASENPDITFVKVDVDDAEDIAAACGISAMPTFQFYKGGTRVDEFRGANTSQLEALVAKH 103
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CIZ3_9FUNG) HSP 1 Score: 96.7 bits (239), Expect = 9.680e-21 Identity = 52/135 (38.52%), Postives = 80/135 (59.26%), Query Frame = 1
Query: 1 MSVREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAAS------AAGGPVMIKLHFEREKPRES 387
M++ +SS + S+ SE KL VT+FTA WCGPC+ VAP+F+ALA + V F++V +D +SG+R+ PTF F+ G K+ E GA+IA+VE+ ++Q+ + ++ GG K + PR S
Sbjct: 1 MTITHISSLSQFN-SKISESKLTVTKFTAVWCGPCKAVAPRFEALANQTTNVNFLEVDVDQQKDVAASSGIRAMPTFVFHKNGKKLAEVVGADIAKVERLTSQYGSPSTFTGSGHVLGGNSAAKSNASASSPRSS 134
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: Thioredoxin (n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DAR8_EMIHU) HSP 1 Score: 94.0 bits (232), Expect = 1.240e-20 Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 61 KLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMA 318
+L+V FTA+WCGPCRR+AP F +LA+ MPEV+FVKV ++D GVR+ PTF FY G+K+ E GAN A + QH A
Sbjct: 7 RLVVVDFTASWCGPCRRIAPVFASLAQEMPEVDFVKVDVDEAQDVAQMCGVRAMPTFQFYRRGSKLGEVSGANEAALRAAIAQHRA 92
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Match: PITH (domain-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H2C2_SYNRA) HSP 1 Score: 98.6 bits (244), Expect = 2.520e-20 Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 1 MSVREVSS-AEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPEVEFVKVYEHNSRDAIMASGVRSFPTFHFYLGGAKVDECRGANIAQVEQKSNQHMAAASAAG 336
M V+ ++S AEF +L S KL+V F ATWCGPCR +AP + L+ + V+F KV RD A G+ + PTF F+ GG KVDE +GA+ +EQK H AAG
Sbjct: 1 MPVKPITSTAEFQQLMTESNEKLVVVDFFATWCGPCRMIAPFIEQLSSKHSNVQFAKVDVDQLRDVASACGISAMPTFQFFKGGKKVDEIKGASAGAIEQKILVHKVDGGAAG 113 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8798.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8798.1.1 >prot_H-canaliculatus_M_contigs8798.1.1 ID=prot_H-canaliculatus_M_contigs8798.1.1|Name=mRNA_H-canaliculatus_M_contigs8798.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=305bp MSVREVSSAEFYELSRRSEGKLLVTQFTATWCGPCRRVAPQFDALARRMPback to top mRNA from alignment at H-canaliculatus_M_contigs8798:325..2549- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8798.1.1 ID=mRNA_H-canaliculatus_M_contigs8798.1.1|Name=mRNA_H-canaliculatus_M_contigs8798.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8798:325..2549- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8798:325..2549- >mRNA_H-canaliculatus_M_contigs8798.1.1 ID=mRNA_H-canaliculatus_M_contigs8798.1.1|Name=mRNA_H-canaliculatus_M_contigs8798.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=915bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8798:325..2549- (Hapterophycus canaliculatus Oshoro7m male)back to top |