mRNA_H-canaliculatus_M_contigs8793.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8793.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8793.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Match: Cathepsin (L-like proteinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTR7_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.680e-47
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    7 QMSFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPEWGAEGYILLKREAAQEGGECGILEQASYPVLA 246
            QMSFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDG+KYWKVKNSWGPEWGAEGYILLKREA QEGGECGILEQASYPVLA
Sbjct:  396 QMSFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGVKYWKVKNSWGPEWGAEGYILLKREADQEGGECGILEQASYPVLA 475
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BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFS5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.990e-32
Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    7 QMSFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPEWGAEGYILLKREAAQEGGECGILEQASYPVL 243
            + +FQ YSGGVL   CGT+LDHGVLLVGYG +EDG+ YW +KNSWGP WG  GYI + R A QEGGECGIL+ ASYPVL
Sbjct:  274 ESAFQFYSGGVLMNGCGTSLDHGVLLVGYGTTEDGVDYWTLKNSWGPSWGDAGYIRVLRGAPQEGGECGILQSASYPVL 352
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BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZA5_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.510e-31
Identity = 56/79 (70.89%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    7 QMSFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPEWGAEGYILLKREAAQEGGECGILEQASYPVL 243
            Q SFQ YS GV T +CGTNLDHGVLLVGYG SEDG  YWKVKNSWG  WG  G+ILL +   QEGG+CG+L Q+SYPVL
Sbjct:  257 QFSFQFYSSGVFTGSCGTNLDHGVLLVGYG-SEDGQDYWKVKNSWGESWGQNGFILLGKNVEQEGGQCGLLLQSSYPVL 334
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BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Match: Cathepsin (L-like proteinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ83_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.090e-30
Identity = 57/84 (67.86%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    7 QMSFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPEWGAEGYILLKREAAQE----GGECGILEQASYPVLA 246
            QM+FQ YSGGV  A CGT LDHGV+LVGYG  +DG  YWKVKNSWGP WG +GYILL+R AA      GGECG+L  A YPVLA
Sbjct:  278 QMAFQFYSGGVFAAPCGTELDHGVVLVGYGTDDDGNDYWKVKNSWGPSWGLDGYILLQRGAAANAGGSGGECGVLMDAIYPVLA 361
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BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCU1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.510e-30
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    7 QMSFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPEWGAEGYILLKREAAQEGGECGILEQASYPVL 243
            Q+SFQLYS GVLT  CGT+LDHGVL  GYG   DG  YWKVKNSWG  WG +GYIL++R  +Q GG+CGIL  ASYP L
Sbjct:  258 QLSFQLYSSGVLTGRCGTSLDHGVLAAGYGTYTDGTDYWKVKNSWGSSWGMDGYILIERGNSQTGGQCGILMSASYPTL 336
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BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Match: Putative (fruit bromelain n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RUD4_ROSCH)

HSP 1 Score: 110 bits (275), Expect = 3.350e-29
Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   16 FQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPEWGAEGYILLKREAAQEGGECGILEQASYPV 240
            FQ YS GV T  CGT+LDHGV  VGYGVS+DG KYW VKNSWG EWG EGYI ++R+ A + G CGI  +ASYP 
Sbjct:   75 FQFYSSGVFTGTCGTSLDHGVTAVGYGVSDDGTKYWLVKNSWGAEWGEEGYIRMQRDVAAQEGLCGIAMEASYPT 149
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BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Match: Pept_C1 (domain-containing protein n=3 Tax=Triticum TaxID=4564 RepID=A0A446Q998_TRITD)

HSP 1 Score: 109 bits (272), Expect = 1.370e-28
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   13 SFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPEWGAEGYILLKREAAQEGGECGILEQASYPVLA 246
            +F  YS GV T  CGT+LDHGV +VGYGV+EDG  YW VKNSWGP WG +GYI +++++  EGG CGI  +ASYPV A
Sbjct:   68 AFMFYSEGVFTGDCGTDLDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEKGYIRVEKDSGAEGGLCGIAMEASYPVKA 145
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BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Match: vignain (n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AE8C5B)

HSP 1 Score: 112 bits (281), Expect = 4.220e-28
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:   16 FQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPEWGAEGYILLKREAAQEGGECGILEQASYPV 240
            FQ YS GV T  CGT+LDHGV +VGYG+++DG KYW VKNSWGPEWG +GYI ++R  +++GG CGI  +ASYP+
Sbjct:  268 FQFYSEGVFTGECGTDLDHGVAIVGYGITQDGTKYWTVKNSWGPEWGEKGYIRMQRGTSRKGGLCGIAMEASYPI 342
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BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2G3J8_9DINO)

HSP 1 Score: 107 bits (267), Expect = 4.760e-28
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    7 QMSFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPEWGAEGYILLKREAAQEGGECGILEQASYPVL 243
            Q +FQLY+GG+L   CGT LDHGVLLVGYG +E+G+ YWKVKNSWGP WG  GYI L R   ++G ECGI +Q +YP++
Sbjct:   39 QTAFQLYTGGILQKECGTKLDHGVLLVGYG-TENGVDYWKVKNSWGPSWGENGYIRLMRGLPKDG-ECGIKDQPTYPIV 115
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Match: Pept_C1 (domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9GF88_ARUDO)

HSP 1 Score: 108 bits (269), Expect = 5.360e-28
Identity = 48/75 (64.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   16 FQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPEWGAEGYILLKREAAQEGGECGILEQASYPV 240
            FQ YS GV    CGT LDHGV  VGYGV+ DG KYW VKNSWGPEWG +GYI + R+ A + G+CGI  +ASYPV
Sbjct:   74 FQFYSEGVFDGRCGTELDHGVTAVGYGVAADGTKYWVVKNSWGPEWGEKGYIRMARDVAAKEGQCGIAMEASYPV 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8793.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cathepsin1.680e-4797.50L-like proteinase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
Uncharacterized2.990e-3269.62protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical4.510e-3170.89protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Cathepsin2.090e-3067.86L-like proteinase n=1 Tax=Tribonema minus TaxID=30... [more]
Hypothetical2.510e-3067.09protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Putative3.350e-2965.33fruit bromelain n=2 Tax=Rosa chinensis TaxID=74649... [more]
Pept_C11.370e-2861.54domain-containing protein n=3 Tax=Triticum TaxID=4... [more]
vignain4.220e-2862.67n=1 Tax=Dioscorea cayennensis subsp. rotundata Tax... [more]
Hypothetical4.760e-2862.03protein n=1 Tax=Alexandrium andersonii TaxID=32796... [more]
Pept_C15.360e-2864.00domain-containing protein n=2 Tax=Arundo donax Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8793contigH-canaliculatus_M_contigs8793:274..944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIL4
PFAMsE1_DerP2_DerF2,Inhibitor_I29,Peptidase_C1
Model size249
Max annot lvl2759|Eukaryota
KEGG koko:K01365
KEGG Pathwayko04140,ko04142,ko04145,ko04210,ko04612,ko05205,ko05323,ko05418,map04140,map04142,map04145,map04210,map04612,map05205,map05323,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0006508,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0016020,GO:0016049,GO:0016787,GO:0019538,GO:0021700,GO:0022622,GO:0030154,GO:0030163,GO:0031224,GO:0031225,GO:0032501,GO:0032502,GO:0040007,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0051603,GO:0060560,GO:0070011,GO:0071695,GO:0071704,GO:0080147,GO:0090558,GO:0090627,GO:0099402,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1905392
Exons2
Evalue2.03e-27
EggNOG OGsCOG4870@1|root,KOG1543@2759|Eukaryota
EC3.4.22.15
Descriptioncysteine-type peptidase activity
Cds size249
COG categoryO
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854173.6685266-CDS-H-canaliculatus_M_contigs8793:273..3991696854173.6685266-CDS-H-canaliculatus_M_contigs8793:273..399Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8793 274..399 +
1696854173.6824825-CDS-H-canaliculatus_M_contigs8793:821..9441696854173.6824825-CDS-H-canaliculatus_M_contigs8793:821..944Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8793 822..944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8793.1.1prot_H-canaliculatus_M_contigs8793.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8793 274..944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8793.1.1

>prot_H-canaliculatus_M_contigs8793.1.1 ID=prot_H-canaliculatus_M_contigs8793.1.1|Name=mRNA_H-canaliculatus_M_contigs8793.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=83bp
MAQMSFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGIKYWKVKNSWGPE
WGAEGYILLKREAAQEGGECGILEQASYPVLA*
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mRNA from alignment at H-canaliculatus_M_contigs8793:274..944+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8793.1.1 ID=mRNA_H-canaliculatus_M_contigs8793.1.1|Name=mRNA_H-canaliculatus_M_contigs8793.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=671bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8793:274..944+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCACAGATGAGCTTCCAGCTGTACTCCGGTGGCGTGCTCACGGCCGC
CTGCGGCACCAACCTCGACCACGGAGTGTTGCTCGTTGGGTACGGCGTGT
CCGAGGACGGGATCAAGTACTGGAAGGTGCGTCGTTGTCATCGTGGACCT
TTTCCTGTTGCGATATTCGAAACCTTGTGACCTCCGCCTAGCACCTACAG
GTTGCACCCCAAGCTGCTGTCGAACCAGATGGAGTTTGTTGCTGTTGTAG
AGTCATGAAGGGAATCTTTTCCTCGCTGCAATTTTGAATGGGTCGCCCCC
TGTGATGTTTGTGTCGTACGTCGCGAACGTAGACAGAGCCACAGTGCTGC
AACGCTTTTGCCCCTGATGGTGAGCCTCCAAATGTTGAAACCCTTAATTT
GGGCACATGTTGTGTGTCGAGAGGGAATGAAGCTTGTTCGTGCTTGCTTG
CGCCGTGACGCCAAAGCACGCTTCCCTTCTCCTCATTCCCCCCTTGCCTC
GCCGTTCTCCGATCCAACTCCACCCCCCCCACCCCCACGCCTCGACAGGT
CAAGAACTCCTGGGGCCCCGAGTGGGGAGCCGAGGGATACATCCTCCTGA
AGCGCGAGGCTGCCCAGGAGGGCGGCGAGTGCGGCATCCTGGAGCAGGCG
TCGTACCCCGTGCTTGCCTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8793:274..944+

>mRNA_H-canaliculatus_M_contigs8793.1.1 ID=mRNA_H-canaliculatus_M_contigs8793.1.1|Name=mRNA_H-canaliculatus_M_contigs8793.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=249bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8793:274..944+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCACAGATGAGCTTCCAGCTGTACTCCGGTGGCGTGCTCACGGCCGC
CTGCGGCACCAACCTCGACCACGGAGTGTTGCTCGTTGGGTACGGCGTGT
CCGAGGACGGGATCAAGTACTGGAAGGTCAAGAACTCCTGGGGCCCCGAG
TGGGGAGCCGAGGGATACATCCTCCTGAAGCGCGAGGCTGCCCAGGAGGG
CGGCGAGTGCGGCATCCTGGAGCAGGCGTCGTACCCCGTGCTTGCCTAA
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