mRNA_H-canaliculatus_M_contigs8328.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8328.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8328.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU70_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 9.590e-30
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 1
Query:    1 ALMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLEV 201
            AL AGAVSRSIAHT VHPAIVVKTLMQGRGTS+QLS LSLKLL RGAGAQFVMSLPHGAFNYATLEV
Sbjct:  210 ALFAGAVSRSIAHTSVHPAIVVKTLMQGRGTSAQLSSLSLKLLSRGAGAQFVMSLPHGAFNYATLEV 276          
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Mitochondrial (energy transfer protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP70_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 4.500e-27
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1
Query:    4 LMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLEV 201
            + AGAVSRSIA TC+ PA VVKTL+QGRGT+SQLS+LS KLL RGAGAQFVMSLPHGAFNYATLEV
Sbjct:    1 MFAGAVSRSIAQTCMQPANVVKTLLQGRGTASQLSNLSFKLLTRGAGAQFVMSLPHGAFNYATLEV 66          
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 7.500e-26
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 1
Query:    1 ALMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLEV 201
            A+ AGA+SRSIA TC+ PA VVKTL+QGRGT+SQLS+LS KLL RGAGAQFVMS+PHGAFNYATLEV
Sbjct:  361 AMFAGAISRSIAQTCMQPANVVKTLLQGRGTASQLSNLSFKLLTRGAGAQFVMSVPHGAFNYATLEV 427          
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Mitochondrial (energy transfer protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.320e-22
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    4 LMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLE 198
            + AGA+SR+IA T + PA VVKTL+QGR TS QL HLS KLL RGAGAQF++SLPHGAFN+ATLE
Sbjct:    1 MFAGALSRAIAQTAMQPANVVKTLLQGRSTSGQLKHLSFKLLTRGAGAQFLLSLPHGAFNFATLE 65          
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Mitochondrial (energy transfer protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT2_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 7.090e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 1
Query:   76 MQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLEV 201
            MQGRGTS+QLS LSLKLLRRGAGAQF+MSLPHGAFNYATLEV
Sbjct:    1 MQGRGTSAQLSSLSLKLLRRGAGAQFIMSLPHGAFNYATLEV 42          
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7A1_HETAK)

HSP 1 Score: 77.0 bits (188), Expect = 5.800e-15
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    4 LMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLE 198
            ++AGAVSRS+A T + P  V+KTL Q  GT+ QL  +S KLL RGAGAQF++S+PHGA  +A +E
Sbjct:   91 MIAGAVSRSVAQTMMQPFNVMKTLKQAHGTADQLKQMSFKLLTRGAGAQFLLSMPHGAIAFAVVE 155          
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: S-adenosylmethionine (mitochondrial carrier protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THW6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.280e-14
Identity = 38/65 (58.46%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    4 LMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLE 198
            ++AGAVSRS A T +HPA VVKTL+Q +G + +L++L++++L RGAGAQF +SLPHGA  +A LE
Sbjct:  226 MLAGAVSRSCAQTAMHPANVVKTLLQTKG-AGELANLNVQILTRGAGAQFALSLPHGALAFAVLE 289          
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Mitochondrial (carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.180e-11
Identity = 33/65 (50.77%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    4 LMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLE 198
            ++AGA+SRS+A   +HP  V+KTL+Q +G+ + +  L++  L RGAGAQF++S+P GAF+YA LE
Sbjct:  107 MVAGALSRSVAQVALHPFNVLKTLLQTKGSFAAVLPLTVADLTRGAGAQFLLSVPTGAFHYAVLE 171          
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EE76_TRICV)

HSP 1 Score: 65.9 bits (159), Expect = 1.650e-11
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    4 LMAGAVSRSIAHTCVHPAIVVKTLMQG------RGTSSQLSHLS-LKLLRRGAGAQFVMSLPHGAFNYATLE 198
            ++ GAVSRS+A T +HPA  +KT++Q       R T +QL   S  KLL RGAGAQ ++S+PHGA N+A LE
Sbjct:   63 MICGAVSRSVAQTVMHPANTMKTILQSNRGAEQRQTVAQLMRPSNFKLLSRGAGAQLLLSIPHGAVNFAVLE 134          
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U588_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.680e-11
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 LMAGAVSRSIAHTCVHPAIVVKTLMQG-RGTSSQLSHL-----SLKLLRRGAGAQFVMSLPHGAFNYATLE 198
            ++ GAVSRS+A T +HPA  +KT++Q  R    Q   +     +LKLL RGAGAQF+MS+PHGA N+A LE
Sbjct:  191 MVCGAVSRSLAQTMMHPANTMKTILQSNRSIEKQTLGMLAKPENLKLLSRGAGAQFLMSVPHGAINFAVLE 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.590e-3092.54protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Mitochondrial4.500e-2783.33energy transfer protein n=1 Tax=Ectocarpus silicul... [more]
Uncharacterized7.500e-2680.60protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Mitochondrial2.320e-2272.31energy transfer protein n=1 Tax=Tribonema minus Ta... [more]
Mitochondrial7.090e-1792.86energy transfer protein n=1 Tax=Ectocarpus silicul... [more]
Hypothetical5.800e-1556.92protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
S-adenosylmethionine1.280e-1458.46mitochondrial carrier protein n=1 Tax=Nannochlorop... [more]
Mitochondrial1.180e-1150.77carrier domain-containing protein n=1 Tax=Tribonem... [more]
Hypothetical1.650e-1151.39protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
Hypothetical1.680e-1152.11protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8328contigH-canaliculatus_M_contigs8328:4577..4780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FP70
PFAMsMito_carr
Model size204
Max annot lvl2759|Eukaryota
KEGG koko:K14684
KEGG TC2.A.29.23
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.52e-28
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
DescriptionS-adenosyl-L-methionine transmembrane transport
Cds size198
COG categoryU
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854148.1073217-UTR-H-canaliculatus_M_contigs8328:4576..45821696854148.1073217-UTR-H-canaliculatus_M_contigs8328:4576..4582Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8328 4577..4582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854148.1270328-CDS-H-canaliculatus_M_contigs8328:4582..47801696854148.1270328-CDS-H-canaliculatus_M_contigs8328:4582..4780Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8328 4583..4780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8328.1.1prot_H-canaliculatus_M_contigs8328.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8328 4583..4780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8328.1.1

>prot_H-canaliculatus_M_contigs8328.1.1 ID=prot_H-canaliculatus_M_contigs8328.1.1|Name=mRNA_H-canaliculatus_M_contigs8328.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=66bp
MAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFV
MSLPHGAFNYATLEV*
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mRNA from alignment at H-canaliculatus_M_contigs8328:4577..4780+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8328.1.1 ID=mRNA_H-canaliculatus_M_contigs8328.1.1|Name=mRNA_H-canaliculatus_M_contigs8328.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8328:4577..4780+ (Hapterophycus canaliculatus Oshoro7m male)
GCCCTCATGGCCGGAGCCGTTAGCAGAAGCATAGCGCACACCTGCGTACA TCCGGCGATCGTGGTGAAGACCTTGATGCAAGGGCGGGGAACTTCTTCGC AGCTTTCTCACCTGTCTCTCAAGCTGCTGCGCAGAGGCGCCGGAGCGCAG TTCGTCATGTCCCTGCCCCACGGAGCCTTCAATTATGCTACCCTAGAGGT GTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8328:4577..4780+

>mRNA_H-canaliculatus_M_contigs8328.1.1 ID=mRNA_H-canaliculatus_M_contigs8328.1.1|Name=mRNA_H-canaliculatus_M_contigs8328.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8328:4577..4780+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCGGAGCCGTTAGCAGAAGCATAGCGCACACCTGCGTACATCCGGC
GATCGTGGTGAAGACCTTGATGCAAGGGCGGGGAACTTCTTCGCAGCTTT
CTCACCTGTCTCTCAAGCTGCTGCGCAGAGGCGCCGGAGCGCAGTTCGTC
ATGTCCCTGCCCCACGGAGCCTTCAATTATGCTACCCTAGAGGTGTGA
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