mRNA_H-canaliculatus_M_contigs8324.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8324.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8324.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Fe-S-cluster (oxidoreductase-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL6_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 7.390e-72
Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYGAKRREREAGRRGERAKAKEMRAFNKALAALERGERPNPELNAFGGDLKGQGERQIRDWGLDE 417
            EYLPDPEEFDLYMSM   DGWCKHFDKE+RACT+Y+DRPRFCRVETETFGSMYGVE EDMDDFCS+CCNEQISDVYGA+              +KE+R FN+ALAALERGERP P+L+AFGGDL+GQGE QIRDWGL+E
Sbjct:  156 EYLPDPEEFDLYMSMTGSDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAE--------------SKELRVFNEALAALERGERPKPDLSAFGGDLRGQGEGQIRDWGLEE 280          
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.130e-31
Identity = 62/131 (47.33%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   16 PEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYGAKRREREAGRRGERAKAKEMRAFNKALAALERGERPNPELNAFGGDLKGQGERQIRDWG 408
            PEE D Y SM    GWCK+FD  NRACTIY  RP FC V  ETF  MYGV+ E+MD FC+ CC EQI+DVYG +              + EM  FN A++ L+RG+   P ++ F G   GQ + Q+  WG
Sbjct:   54 PEELDQYKSMVLPSGWCKYFDPTNRACTIYETRPSFCTVSPETFADMYGVDGEEMDSFCTHCCREQITDVYGKR--------------SDEMHRFNAAISELKRGDELQP-VDPFSG---GQRDDQVFKWG 166          
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Fe-S (cluster protein n=3 Tax=Nostocales TaxID=1161 RepID=A0A139X7I9_9CYAN)

HSP 1 Score: 108 bits (271), Expect = 4.310e-28
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
            EYL  P+E +LY+SM  DDGWC ++DKENR C IY +RPRFCRVETE F  MYG+E E+++DF   CC++QI  VYG
Sbjct:   26 EYLS-PKELELYLSMVGDDGWCVNYDKENRECRIYPNRPRFCRVETEVFQDMYGIEPEELNDFAIDCCHQQIEGVYG 101          
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: YkgJ (family cysteine cluster protein n=1 Tax=Sphaerospermopsis aphanizomenoides TaxID=459663 RepID=UPI0019087D7A)

HSP 1 Score: 107 bits (267), Expect = 1.740e-27
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
            EYL  PEE  LY+SM  +DGWC +FD E R CTIY DRPRFCRVE ETF  MYG+E E+++DF   CC +QI  VYG
Sbjct:   26 EYLS-PEEMGLYLSMVGEDGWCVNFDHETRECTIYADRPRFCRVEAETFQDMYGIEPEELNDFAIDCCRQQIDCVYG 101          
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3R1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.370e-27
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   13 DPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYGAKRREREAGRRGERAKAKEMRAFNKALAALER 327
            DP+E   Y SM  +DGWC +FDK  R CTIY+DRP FC+VE  +F SMYG+ ++D+D+FC++CC E ISDVYG                ++EMR FN AL +L R
Sbjct:  100 DPDERIQYESMVGNDGWCVYFDKITRLCTIYDDRPDFCKVEANSFQSMYGIHSDDLDNFCTSCCREHISDVYGLN--------------SQEMRRFNGALKSLRR 190          
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Fe-S-cluster (oxidoreductase-like n=2 Tax=Synechococcus elongatus TaxID=32046 RepID=Q31QP8_SYNE7)

HSP 1 Score: 108 bits (270), Expect = 9.850e-27
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   16 PEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
            PEE  LY+SM   DGWC HFD ++R C+IY+DRPRFCRV+ ETF SM+GV  ED++DF  ACC EQI  VYG
Sbjct:  129 PEEMALYLSMVGSDGWCIHFDHDSRLCSIYDDRPRFCRVQPETFESMFGVPKEDLNDFAIACCEEQIEGVYG 200          
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Fe-S (cluster protein n=1 Tax=Mastigocoleus testarum BC008 TaxID=371196 RepID=A0A0V7ZIL1_9CYAN)

HSP 1 Score: 105 bits (262), Expect = 1.360e-26
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
            EYL  PEE +LY+SM  + GWC ++D+E R C IY DRPRFCRVE E F  MYG+EA+D++DF   CCN+QI  VYG
Sbjct:   26 EYLS-PEELELYLSMVGEGGWCINYDRELRECKIYPDRPRFCRVEAEVFVEMYGIEAQDLNDFAIECCNQQIEGVYG 101          
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Fe-S (cluster protein n=1 Tax=Aliterella atlantica CENA595 TaxID=1618023 RepID=A0A0D8ZWI4_9CYAN)

HSP 1 Score: 105 bits (261), Expect = 1.770e-26
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
            EYL  PEE ++YMSM  +DGWC ++D+ NR C IY DRPRFCRVE+E F  MYG+E E+++DF   CC EQI+ VYG
Sbjct:   26 EYLL-PEELEVYMSMVGEDGWCINYDRLNRECRIYADRPRFCRVESEIFQDMYGIEPEELNDFAIECCQEQITGVYG 101          
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: YkgJ (family cysteine cluster protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI001686C0EB)

HSP 1 Score: 105 bits (261), Expect = 1.770e-26
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   16 PEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
            P E  LY+SM  DDGWC HFDK  R C++YNDRPRFCRVE + F  ++GVE  +++DF  ACC EQI  VYG
Sbjct:   30 PTELALYLSMVGDDGWCVHFDKATRECSVYNDRPRFCRVEPDVFQDLFGVEPTELNDFAIACCQEQIEGVYG 101          
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: YkgJ (family cysteine cluster protein n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019F4FAC6)

HSP 1 Score: 104 bits (260), Expect = 2.000e-26
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
            EYL  PE+ D+YMSM  +DGWC + D+E R CTIY  RP FCRV  ETF SM+G+ A D++DF   CC EQI DVYG
Sbjct:   26 EYLS-PEQIDIYMSMVGEDGWCINLDRETRECTIYEKRPSFCRVTAETFHSMFGITAADLNDFAIDCCREQIEDVYG 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Fe-S-cluster7.390e-7276.26oxidoreductase-like n=2 Tax=Ectocarpus TaxID=2879 ... [more]
Uncharacterized2.130e-3147.33protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Fe-S4.310e-2861.04cluster protein n=3 Tax=Nostocales TaxID=1161 RepI... [more]
YkgJ1.740e-2762.34family cysteine cluster protein n=1 Tax=Sphaerospe... [more]
Hypothetical2.370e-2749.52protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Fe-S-cluster9.850e-2763.89oxidoreductase-like n=2 Tax=Synechococcus elongatu... [more]
Fe-S1.360e-2659.74cluster protein n=1 Tax=Mastigocoleus testarum BC0... [more]
Fe-S1.770e-2659.74cluster protein n=1 Tax=Aliterella atlantica CENA5... [more]
YkgJ1.770e-2659.72family cysteine cluster protein n=2 Tax=Cyanobacte... [more]
YkgJ2.000e-2659.74family cysteine cluster protein n=1 Tax=filamentou... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8324contigH-canaliculatus_M_contigs8324:221..1426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKL6
PFAMsCxxCxxCC
Model size417
Max annot lvl2759|Eukaryota
KEGG koko:K06940
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.21e-72
EggNOG OGsCOG0727@1|root,2RZ66@2759|Eukaryota
Ec32 ortholog descriptionPutative zinc- or iron-chelating domain containing protein
Ec32 orthologEc-16_003430.1
DescriptionPutative zinc- or iron-chelating domain
Cds size417
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854147.8241777-CDS-H-canaliculatus_M_contigs8324:220..5011696854147.8241777-CDS-H-canaliculatus_M_contigs8324:220..501Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8324 221..501 +
1696854147.840019-CDS-H-canaliculatus_M_contigs8324:1290..14261696854147.840019-CDS-H-canaliculatus_M_contigs8324:1290..1426Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8324 1291..1426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8324.1.1prot_H-canaliculatus_M_contigs8324.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8324 221..1426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8324.1.1

>prot_H-canaliculatus_M_contigs8324.1.1 ID=prot_H-canaliculatus_M_contigs8324.1.1|Name=mRNA_H-canaliculatus_M_contigs8324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=139bp
EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFG
SMYGVEAEDMDDFCSACCNEQISDVYGAKRREREAGRRGERAKAKEMRAF
NKALAALERGERPNPELNAFGGDLKGQGERQIRDWGLDE
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mRNA from alignment at H-canaliculatus_M_contigs8324:221..1426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8324.1.1 ID=mRNA_H-canaliculatus_M_contigs8324.1.1|Name=mRNA_H-canaliculatus_M_contigs8324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8324:221..1426+ (Hapterophycus canaliculatus Oshoro7m male)
GAATACCTCCCGGATCCGGAGGAGTTCGACTTGTACATGTCCATGGCGGA AGACGACGGTTGGTGCAAGCACTTCGACAAGGAGAACAGGGCCTGCACCA TCTACAACGACCGACCCCGCTTCTGCCGGGTGGAGACGGAGACGTTCGGG AGCATGTACGGGGTGGAGGCGGAAGATATGGACGACTTTTGCTCGGCGTG CTGCAACGAACAAATTTCCGACGTCTACGGGGCAAAGAGGCGAGAGAGAG AGGCGGGGCGGAGGGGAGAAAGAGCAAAGGCGTCGTCAACCTTGCTGTTG TTTTCGTTGCTGCCGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGAT GCCAGTGATGTTTGTCTTCCGACTGACACTGCCGACCTGGCTCCTCGACA GTACCTCCACGTCCTACGCTGATCCAGCCAGGAAAAGGCCAAAGCTCCGT TTTTTCTCATTTACAGCTTCATTTCTCTGCTACCAAGGGCCTCTATCTCT GCGTTGCGTCAGCGACTGTTTGAGCTTGACTCGTATCATAATATCTTCAA GCACGACTTTTCCGTGGGTGTGCTGTCGCTTAGAAGTCATTGGCGGAGAC CTCGAGATTGATTGCAGCCTCCACATACTGAAACATCGTCCACATTGGAC CCCTCTGGTCGACCACCCCTGACACGCATGCCAAAGGGGACGCCTGTCCG TTAAACCGAGCATGTGGAACAGCACTACGCGGCGAATCGCTTGTTTTCTC TCGCTGACATGAGGCGATTCCTCGCAGGTCCAACAGGGTAGCGTTAAGGG TACCTTTCTTACTCTATGTGCTCCGATTTTGTCCCCACATGTGCGAGCAG CGATAATCTTTAGTTACTAACCTGAGCTGAACATCAATCGAGTGAACCAG ACCGGGAATCAGTGCCGCCCAAGGGTGATCGTGTAAGGTTCGATGTGCAT GGTTCTCGCAAAACTTGACTGGGATACAAGCGTACCTTGCATCAACAGCA CATGCACAGACACCTAACTTCATGGTTCTTCCGCGCGTGCGCTTCCTCCT TCCTCCTCCCGGATGTTCAGCAAGGAGATGCGAGCTTTCAACAAAGCCCT CGCCGCGCTAGAGAGGGGAGAGCGACCAAACCCCGAGCTAAACGCCTTTG GCGGGGATCTCAAGGGACAGGGAGAGCGGCAAATTCGAGATTGGGGTCTC GACGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8324:221..1426+

>mRNA_H-canaliculatus_M_contigs8324.1.1 ID=mRNA_H-canaliculatus_M_contigs8324.1.1|Name=mRNA_H-canaliculatus_M_contigs8324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=417bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8324:221..1426+ (Hapterophycus canaliculatus Oshoro7m male)
GAATACCTCCCGGATCCGGAGGAGTTCGACTTGTACATGTCCATGGCGGA
AGACGACGGTTGGTGCAAGCACTTCGACAAGGAGAACAGGGCCTGCACCA
TCTACAACGACCGACCCCGCTTCTGCCGGGTGGAGACGGAGACGTTCGGG
AGCATGTACGGGGTGGAGGCGGAAGATATGGACGACTTTTGCTCGGCGTG
CTGCAACGAACAAATTTCCGACGTCTACGGGGCAAAGAGGCGAGAGAGAG
AGGCGGGGCGGAGGGGAGAAAGAGCAAAGGCCAAGGAGATGCGAGCTTTC
AACAAAGCCCTCGCCGCGCTAGAGAGGGGAGAGCGACCAAACCCCGAGCT
AAACGCCTTTGGCGGGGATCTCAAGGGACAGGGAGAGCGGCAAATTCGAG
ATTGGGGTCTCGACGAA
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