mRNA_H-canaliculatus_M_contigs8322.4.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8322.4.1
Unique NamemRNA_H-canaliculatus_M_contigs8322.4.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8322.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z7_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 8.680e-55
Identity = 201/499 (40.28%), Postives = 231/499 (46.29%), Query Frame = 1 
Query:    1 QEETQQRLPMPHGSIISEADAWAKAAAASTSRTANPLPDEGGEAEGDXXXXXXXXXXXPPFVSDGLTVSFSPRTRHEGPRASQRLYHRAGDWSEG---LTRPSGKEHPGRFGRWGPDTAREQWSCCLWEEADTPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGGCEVVRPHPDPGGTTTADDVHLVWRRSERDVRGDGVEDGRNNGNSIPR--IRHEAWGADRGGQGTGDREDRELWRPMLARRISGAGAGGGAAWSLIGHSRRPQTANARMIGRRPVAPT----ASATPAGKAIDGIAPGPKQNSSLIGS----GGAGXXXXXXXXXCSPASLGALRSSGSSGFR----RRPGSAPPPATDANRQXXXXXXXXXHPHKNRAL-NGPSPIMNLRSARAKAGWQRQRPTPVGTSARGLLRSGFRTNRNNRNGIQCDLAGNTFEGGVSVDGRGQQR-SRSCRESSLRSRSLTSLNAVGSSYSVYSKGEGRRVGAAAAA 1440
            QEETQQ+LPMPHGSIISEADAWAKAA  + +     L DE  E               PP+V DGLTVSFS      G R  + L+      + G     RPS +EHPGRFGRWG + ARE+WSCCL  +      XXXXXXX                    V GGCE V P   PGG T ADDV LVW R      GD                 R EAWGA RGG      + RELWRPMLA  +SG    GGAAWSLI   RRPQTANAR++GR+          +AT A +     AP  +  +   G     GGA                G   +  + G R     RPGSAPP  T   R          H +K  A+ N  S +  LRSARA+AGWQR+ PTPV  S  G+ R G                   F    S  G      SR      +  RS+ SLNA GS YSVYSKG GR      AA
Sbjct:  217 QEETQQKLPMPHGSIISEADAWAKAAEVAAAA----LSDEDEEP-------------LPPYVPDGLTVSFSTN----GGRRRRTLHDEESAITGGGQTSKRPS-QEHPGRFGRWGTE-ARERWSCCLCGDXXXXXXXXXXXXXGRRGIVRGRVG---------VVGGCEAVPPRLGPGGMTAADDVRLVWGRG-----GDXXXXXXXXXXXXXXGGTRREAWGAARGGD-----DGRELWRPMLATSVSGGS--GGAAWSLIRQHRRPQTANARLMGRKAAXXXXXXXTTATEASRGGIKYAPQARNKAQRAGGVACGGGAAASVGRECHRKRDVVYGGKHNDTNRGGRPRSSARPGSAPPAGTTPGRN---------HNNKQHAVKNTSSSLTALRSARARAGWQRKGPTPV--SRGGITRFGDNY---------------AFRNSSSSSGNNHYHCSRGATARGIADRSMFSLNAGGSVYSVYSKGGGREAAPVVAA 645
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BLAST of mRNA_H-canaliculatus_M_contigs8322.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ1_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 2.420e-52
Identity = 211/488 (43.24%), Postives = 244/488 (50.00%), Query Frame = 1 
Query:    1 QEETQQRLPMPHGSIISEADAWAKAAAASTSRTANPLPDEGGEAEGDXXXXXXXXXXXPPFVSDGLTVSFSPRTRHEGPRASQRLYHRAGDWSEG---LTRPSGKEHPGRFGRWGPDTAREQWSCCLWEEADTPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGGCEVVRPHPDPGGTTTADDVHLVWRRSERDVRGDGVEDGRNNGNSIPRIRHEAWGADRGGQGTGDREDRELWRPMLARRISGAGAGGGAAWSLIGHSRRPQTANARMIGRRPVA-PTASATPAGKAIDGIAPGPKQNSSLIGSGGAGXXXXXXXXXCSPASLGALRSSGSSGFRR-------RPGSAPPPATDANRQXXXXXXXXXHPHKNRAL-NGPSPIMNLRSARAKAGWQRQRPTPVGTSARGLLRSG----FRTNRNNRNGIQCDLAGNTFEGGVSVDGRGQQRSRSCRESSLRSRSLTSLNAVGSSYSVYSKGEGR 1416
            QEETQQ+LPMPHGSIISEADAWAKAA  +                  XXXXXXXXXXX  +V DGLTVSFS    +EG R  + L+      S G     RPS +EHPGRFGRWG + AREQWSCCL       SG XXXXXXXXXX                VAGGCE V P   PGG T ADDV LVW              G +      RIR EAWG  +GG      + RELWRPMLA  +SG G  GGAAWSLI   RRPQTANAR++GR+  A PT +A  +   I   +    +           XXXXX    C            +   RR       RPGSAPP  T   R          H +K  A+ N  S +  LRSARA+AGWQR+  TPV  S  G+ R G    FR + +         + +   GG++                   RS+ SLNA GS YSVYSKG GR
Sbjct:  227 QEETQQKLPMPHGSIISEADAWAKAAEVAA-----------------XXXXXXXXXXXXXYVPDGLTVSFS---TNEG-RRRRTLHDEESAISGGGPTSKRPS-QEHPGRFGRWGTE-AREQWSCCL---CGDDSGGXXXXXXXXXXEDVDGGRRGRIRGRVGVAGGCEAVPPRLGPGGMTAADDVRLVWGSGGXXXX---XXCGSSGSAGAGRIRREAWGTAQGGD-----DGRELWRPMLATSVSGGG--GGAAWSLIRQHRRPQTANARLMGRKAAAGPTTAAEASRGGISNASQARNKARXXXXXXXXXXXXXXVRRECHRKCDVVYGGKHNGNNRRGRPRSCARPGSAPPAGTTTGRN---------HNNKQHAVKNISSSLTALRSARARAGWQRKGSTPV--SRGGITRFGNSYAFRNSSSXXXXXHYYCSRDATAGGIA------------------DRSMFSLNAGGSVYSVYSKGGGR 649
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8322.4.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.680e-5540.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.420e-5243.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8322contigH-canaliculatus_M_contigs8322:2934..4884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1912
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003110.1
Cds size1461
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854147.7254891-UTR-H-canaliculatus_M_contigs8322:2933..33571696854147.7254891-UTR-H-canaliculatus_M_contigs8322:2933..3357Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8322 2934..3357 -
1696854147.782146-UTR-H-canaliculatus_M_contigs8322:4857..48841696854147.782146-UTR-H-canaliculatus_M_contigs8322:4857..4884Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8322 4858..4884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854147.7438965-CDS-H-canaliculatus_M_contigs8322:3357..44181696854147.7438965-CDS-H-canaliculatus_M_contigs8322:3357..4418Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8322 3358..4418 -
1696854147.767456-CDS-H-canaliculatus_M_contigs8322:4457..48571696854147.767456-CDS-H-canaliculatus_M_contigs8322:4457..4857Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8322 4458..4857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8322.4.1prot_H-canaliculatus_M_contigs8322.4.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8322 3358..4857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8322.4.1

>prot_H-canaliculatus_M_contigs8322.4.1 ID=prot_H-canaliculatus_M_contigs8322.4.1|Name=mRNA_H-canaliculatus_M_contigs8322.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=487bp
MPHGSIISEADAWAKAAAASTSRTANPLPDEGGEAEGDEGEEEGQPSPPP
PFVSDGLTVSFSPRTRHEGPRASQRLYHRAGDWSEGLTRPSGKEHPGRFG
RWGPDTAREQWSCCLWEEADTPSGGGGGDGGGETGGGNQGGGPEGRRRGG
GVAGGCEVVRPHPDPGGTTTADDVHLVWRRSERDVRGDGVEDGRNNGNSI
PRIRHEAWGADRGGQGTGDREDRELWRPMLARRISGAGAGGGAAWSLIGH
SRRPQTANARMIGRRPVAPTASATPAGKAIDGIAPGPKQNSSLIGSGGAG
GIHGGGGGGCSPASLGALRSSGSSGFRRRPGSAPPPATDANRQRQHQHHH
RRHPHKNRALNGPSPIMNLRSARAKAGWQRQRPTPVGTSARGLLRSGFRT
NRNNRNGIQCDLAGNTFEGGVSVDGRGQQRSRSCRESSLRSRSLTSLNAV
GSSYSVYSKGEGRRVGAAAAAATTVLPSDRGGARRP*
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mRNA from alignment at H-canaliculatus_M_contigs8322:2934..4884-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8322.4.1 ID=mRNA_H-canaliculatus_M_contigs8322.4.1|Name=mRNA_H-canaliculatus_M_contigs8322.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1951bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8322:2934..4884- (Hapterophycus canaliculatus Oshoro7m male)
CAGGAAGAAACCCAGCAAAGACTGCCTATGCCACACGGCTCCATTATCAG
CGAGGCCGACGCATGGGCCAAAGCCGCTGCGGCTTCGACGTCAAGAACGG
CGAATCCTCTCCCTGACGAGGGAGGGGAGGCGGAGGGAGACGAAGGGGAG
GAGGAGGGACAGCCGTCGCCGCCACCACCTTTCGTGTCCGACGGCCTCAC
CGTATCCTTTTCCCCGAGAACTCGCCACGAGGGGCCCCGTGCATCGCAGC
GATTGTACCACCGGGCTGGGGACTGGAGCGAGGGGTTGACGCGCCCCTCA
GGGAAGGAACACCCTGGCCGGTTCGGGCGGTGGGGGCCGGATACAGCACG
AGAGCAGTGGTCGTGCTGCTTGTGGGAGGAGGCCGACACTCCTTCCGGCG
GTGGCGGCGGCGACGGCGGAGGTGAAAGTCGCAACGGCGGCTTCGACACG
GACGGCAGCGCCGCAGCCGGCGGCGGGAACCAAGGCGGTGGCCCTGAAGG
GAGACGAAGAGGCGGTGGCGTGGCCGGCGGGTGTGAAGTCGTACGGCCAC
ATCCAGATCCTGGAGGAACGACAACCGCGGACGACGTCCACCTCGTCTGG
CGTAGGTCGGAGCGTGACGTGAGAGGCGACGGCGTTGAGGACGGTAGAAA
TAACGGTAACAGCATTCCGAGGATTCGACATGAGGCTTGGGGAGCGGATC
GGGGTGGGCAGGGAACCGGAGACAGGGAAGACAGGGAGCTATGGAGACCA
ATGCTGGCGAGAAGAATTAGCGGCGCCGGCGCCGGTGGCGGCGCAGCGTG
GAGCCTCATTGGTCACAGTCGCCGGCCGCAGACCGCCAATGCGCGCATGA
TCGGCCGAAGACCAGTAGCGCCAACAGCATCAGCAACACCAGCGGGCAAG
GCTATAGACGGCATTGCCCCCGGGCCAAAACAGAACTCAAGCTTGATAGG
CTCCGGTGGTGCAGGTGGTATCCACGGAGGTGGCGGCGGGGGCTGCAGCC
CTGCTTCACTCGGTGCGTTGCGTAGCAGCGGCAGTAGCGGCTTCAGACGG
AGGCCGGGATCAGCTCCTCCTCCGGCAACGGACGCAAACCGCCAGCGCCA
ACACCAACACCACCACCGACGCCATCCCCACAAGAACCGCGCCCTTAATG
GACCATCGCCTATCATGAACCTGCGGAGCGCCCGCGCCAAGGCGGGGTGG
CAGCGACAACGTCCGACCCCGGTCGGCACCAGCGCCCGAGGCCTACTCCG
GAGCGGTTTCCGCACAAACCGAAACAACCGAAACGGCATTCAGTGCGACC
TTGCGGGCAATACTTTCGAAGGAGGCGTCAGTGTTGACGGGCGGGGGCAA
CAGCGATCCCGGAGCTGCAGGGAGTCGTCCCTTAGATCTAGGTCTTTGAC
GTCTTTGAACGCGGTGGGCTCCAGTTATTCCGTCTATTCGAAGGGGGAAG
GCCGACGGGTTGGGGCAGCGGCGGCGGCGGCCACCACCGTCTTGCCTAGC
GATCGGGGAGGTGCTCGACGGCCTTAGCTTCGCCCTTTAGACGGCCGCAA
CGGCGTCTTTCTGTGCGCGTGGTCTAGAATGTGAATAGGGTTGAGGAGCC
CAGATGGCGCGGGGGCGTTCGTCTAGATTGGATGGGGACGGGGTGATAGA
CAGCCCTTTGGCCGAGATGAAGCTTCGCCGGCGGCACTGACCGGCTGAGT
CGGGAGTAACAATGGGGGCGTTTCCGAGACGACCGACGAGGGCGGACTTT
CTCGGACAGAGACCGTGGCTAGACGCAAGGGTAAATAAAAAGTCTGGTGC
GGATGGACCAAGGAGCGGGCATGGGTGCGTCCTTGTACGCGTCCGTGTGT
GTTGATCCTCTGTTACATCACTCGCACCCACACCCACACCTACACACATA
CACCCACGCACACAACGACCTTGCCGGAACCTTGCATGTCTTCGATATCC
A
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8322:2934..4884-

>mRNA_H-canaliculatus_M_contigs8322.4.1 ID=mRNA_H-canaliculatus_M_contigs8322.4.1|Name=mRNA_H-canaliculatus_M_contigs8322.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1461bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8322:2934..4884- (Hapterophycus canaliculatus Oshoro7m male)
ATGCCACACGGCTCCATTATCAGCGAGGCCGACGCATGGGCCAAAGCCGC
TGCGGCTTCGACGTCAAGAACGGCGAATCCTCTCCCTGACGAGGGAGGGG
AGGCGGAGGGAGACGAAGGGGAGGAGGAGGGACAGCCGTCGCCGCCACCA
CCTTTCGTGTCCGACGGCCTCACCGTATCCTTTTCCCCGAGAACTCGCCA
CGAGGGGCCCCGTGCATCGCAGCGATTGTACCACCGGGCTGGGGACTGGA
GCGAGGGGTTGACGCGCCCCTCAGGGAAGGAACACCCTGGCCGGTTCGGG
CGGTGGGGGCCGGATACAGCACGAGAGCAGTGGTCGTGCTGCTTGTGGGA
GGAGGCCGACACTCCTTCCGGCGGTGGCGGCGGCGACGGCGGAGGTGAAA
CCGGCGGCGGGAACCAAGGCGGTGGCCCTGAAGGGAGACGAAGAGGCGGT
GGCGTGGCCGGCGGGTGTGAAGTCGTACGGCCACATCCAGATCCTGGAGG
AACGACAACCGCGGACGACGTCCACCTCGTCTGGCGTAGGTCGGAGCGTG
ACGTGAGAGGCGACGGCGTTGAGGACGGTAGAAATAACGGTAACAGCATT
CCGAGGATTCGACATGAGGCTTGGGGAGCGGATCGGGGTGGGCAGGGAAC
CGGAGACAGGGAAGACAGGGAGCTATGGAGACCAATGCTGGCGAGAAGAA
TTAGCGGCGCCGGCGCCGGTGGCGGCGCAGCGTGGAGCCTCATTGGTCAC
AGTCGCCGGCCGCAGACCGCCAATGCGCGCATGATCGGCCGAAGACCAGT
AGCGCCAACAGCATCAGCAACACCAGCGGGCAAGGCTATAGACGGCATTG
CCCCCGGGCCAAAACAGAACTCAAGCTTGATAGGCTCCGGTGGTGCAGGT
GGTATCCACGGAGGTGGCGGCGGGGGCTGCAGCCCTGCTTCACTCGGTGC
GTTGCGTAGCAGCGGCAGTAGCGGCTTCAGACGGAGGCCGGGATCAGCTC
CTCCTCCGGCAACGGACGCAAACCGCCAGCGCCAACACCAACACCACCAC
CGACGCCATCCCCACAAGAACCGCGCCCTTAATGGACCATCGCCTATCAT
GAACCTGCGGAGCGCCCGCGCCAAGGCGGGGTGGCAGCGACAACGTCCGA
CCCCGGTCGGCACCAGCGCCCGAGGCCTACTCCGGAGCGGTTTCCGCACA
AACCGAAACAACCGAAACGGCATTCAGTGCGACCTTGCGGGCAATACTTT
CGAAGGAGGCGTCAGTGTTGACGGGCGGGGGCAACAGCGATCCCGGAGCT
GCAGGGAGTCGTCCCTTAGATCTAGGTCTTTGACGTCTTTGAACGCGGTG
GGCTCCAGTTATTCCGTCTATTCGAAGGGGGAAGGCCGACGGGTTGGGGC
AGCGGCGGCGGCGGCCACCACCGTCTTGCCTAGCGATCGGGGAGGTGCTC
GACGGCCTTAG
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