mRNA_H-canaliculatus_M_contigs832.5.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Match: Farnesyltransferase, (CAAX box, alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJX2_ECTSI) HSP 1 Score: 191 bits (486), Expect = 1.300e-57 Identity = 92/109 (84.40%), Postives = 99/109 (90.83%), Query Frame = 1
Query: 1 MDDDDLRVPLEGFEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSGETSERALAITRLVLEYNASHYTAWWFRRRCLFALGMDLVDELDVVEDIAGDNPKNYQV 327
MD DDL+VPL GFEDVTPIPQ+D +PVV IAY+HNY VA DYLRAFQ SGETSER+LAITRLVLEYNASHYTAWWFRRRCLFALGMDL +EL+V EDIAGDNPKNYQV
Sbjct: 1 MDVDDLQVPLRGFEDVTPIPQDDSADPVVSIAYRHNYTVATDYLRAFQASGETSERSLAITRLVLEYNASHYTAWWFRRRCLFALGMDLANELEVAEDIAGDNPKNYQV 109
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Match: Farnesyltransferase, (CAAX box, alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWW6_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.240e-32 Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 1
Query: 19 RVPLEGFEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSGETSERALAITRLVLEYNASHYTAWWFRRRCLFALGMDLVDELDVVEDIAGDNPKNYQV 327
+ PL G+EDVTPIPQ + NPV IAY +Y+ A DY RA Q SGE SERAL +T +++ N++HYTAW +RRRCLFAL DL +EL V D+A NPKNYQ+
Sbjct: 7 QQPLPGWEDVTPIPQAECENPVARIAYASDYETAMDYFRAAQASGELSERALELTADIIDMNSAHYTAWQYRRRCLFALNKDLAEELSYVRDVALSNPKNYQI 109
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X914_9EUKA) HSP 1 Score: 113 bits (283), Expect = 1.470e-27 Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 13 DLRVPLEG---FEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSGETSERALAITRLVLEYNASHYTAWWFRRRCLFALGMDLVDELDVVEDIAGDNPKNYQV 327
DL PL FED+TPI Q+DGPNPVV IAY ++ DY RA GE SERALA+TR V++ N ++YT W FRR CLFALG +L +EL V+ IA + KNYQ+
Sbjct: 12 DLTFPLSSSALFEDITPIRQDDGPNPVVSIAYSQHFVDVMDYFRAILKKGEHSERALALTREVIKVNPANYTGWLFRRECLFALGANLKEELKFVDQIAAVSSKNYQL 119
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNC8_AURAN) HSP 1 Score: 105 bits (261), Expect = 2.810e-25 Identity = 56/105 (53.33%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 28 LEGFEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSGETSERALAITRLVLEYNASHYTAWWFRRRCLFAL--GMD---LVDELDVVEDIAGDNPKNYQV 327
+ +EDV PI Q+DGPNPVVPIAY Y + RAF SGE S R L +T +LE+NA+HYT W RR+CLFAL G D L DE+ D+A NPKNYQ+
Sbjct: 2 MAAYEDVVPIAQDDGPNPVVPIAYPAEYARLMGFFRAFLASGERSPRVLDLTADLLEHNAAHYTVWHVRRQCLFALADGGDATVLGDEMAYSSDVASGNPKNYQI 106
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Match: Uncharacterized (protein n=5 Tax=Rhizopus TaxID=4842 RepID=A0A367J486_RHIAZ) HSP 1 Score: 106 bits (264), Expect = 5.980e-25 Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1
Query: 37 FEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSGETSERALAITRLVLEYNASHYTAWWFRRRCLFALGMDLVDELDVVEDIAGDNPKN 318
++DVTPIPQ+DGPNP+VPIAY YK A DY RA + E SER L +T+ +LE N +HYT W +R+ LFAL DL +ELD +++IA D KN
Sbjct: 9 WKDVTPIPQDDGPNPLVPIAYSTEYKDAMDYFRAVIRANEKSERVLQLTQDILERNPAHYTVWNYRQDVLFALNKDLNEELDYIDEIAADQAKN 102
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Match: Protein (farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A0B0NT77_GOSAR) HSP 1 Score: 103 bits (257), Expect = 6.380e-25 Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 37 FEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSGETSERALAITRLVLEYNASHYTAWWFRRRCLFALGMDLVDELDVVEDIAGDNPKNYQ 324
+ DVTP+PQ+DGPNPVVPIAYK ++ DY RA + E S RAL +TR + N +YT W FRR L AL DL +ELD ++ IA N KNYQ
Sbjct: 18 WRDVTPLPQDDGPNPVVPIAYKEEFRETMDYFRAIYKADERSPRALRLTRRAIHLNPGNYTVWHFRRLVLEALNADLDEELDFLQRIANSNSKNYQ 113
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7VCP4_9FUNG) HSP 1 Score: 106 bits (264), Expect = 6.420e-25 Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 37 FEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSGETSERALAITRLVLEYNASHYTAWWFRRRCLFALGMDLVDELDVVEDIAGDNPKNYQV 327
++D+TPIPQ+DGPNP+VPIAY Y A DY RA + E S+R L + + V++ N +HYT W +R++ LF+L DL ELD +++IA D KNYQV
Sbjct: 12 WKDITPIPQDDGPNPLVPIAYSREYADAMDYFRAVTRANEKSQRVLTLIQDVIDMNPAHYTVWNYRQQVLFSLNADLNQELDYIDEIAADQAKNYQV 108
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Match: Uncharacterized (protein n=1 Tax=Glycine max TaxID=3847 RepID=C6TD99_SOYBN) HSP 1 Score: 103 bits (256), Expect = 1.490e-24 Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 19 RVPLEG---FEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSGETSERALAITRLVLEYNASHYTAWWFRRRCLFALGMDLVDELDVVEDIAGDNPKNYQV 327
RVPL + DVTP+PQ DGPNPVVPI Y + DY RA ++ E S RALA+T +++N+ +YT W FRR L +L +DL DEL+ VE +A N KNYQ+
Sbjct: 14 RVPLRERVEWSDVTPVPQNDGPNPVVPIQYTEEFSEVMDYFRAVYLTDERSPRALALTAEAVQFNSGNYTVWHFRRLLLESLKVDLNDELEFVERMAAGNSKNYQM 119
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Match: Uncharacterized (protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162B876_DAUCS) HSP 1 Score: 105 bits (261), Expect = 2.500e-24 Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 19 RVPL---EGFEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSGETSERALAITRLVLEYNASHYTAWWFRRRCLFALGMDLVDELDVVEDIAGDNPKNYQV 327
RVPL E + DV P+ Q DGPNPVVPIAY + DY RA ++ E S R+L +T L + NA +YT W FRR L AL ++L +ELD V+ I+ +NPKNYQ+
Sbjct: 6 RVPLSEQEEWSDVIPVTQNDGPNPVVPIAYSEEFSETMDYFRAVYLADERSPRSLKLTALAIRLNAGNYTVWQFRRLILEALNVNLNEELDFVDSISSNNPKNYQI 111
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Match: Uncharacterized (protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GTT7_FAGSY) HSP 1 Score: 104 bits (260), Expect = 3.710e-24 Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 19 RVPLEG---FEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSGETSERALAITRLVLEYNASHYTAWWFRRRCLFALGMDLVDELDVVEDIAGDNPKNYQV 327
R+PL + DVTP+PQ+DGPNPVVPIAYK ++ DY RA + E S RAL++T + +NA++YT W FRR L AL DL EL +E+IA N KNYQ+
Sbjct: 13 RIPLSQRPEWSDVTPLPQDDGPNPVVPIAYKPDFVETMDYFRAVYQADERSSRALSLTAEAIHFNAANYTVWHFRRLILEALDADLQVELGFIENIASGNSKNYQI 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs832.5.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs832.5.1 >prot_H-canaliculatus_M_contigs832.5.1 ID=prot_H-canaliculatus_M_contigs832.5.1|Name=mRNA_H-canaliculatus_M_contigs832.5.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=149bp MDDDDLRVPLEGFEDVTPIPQEDGPNPVVPIAYKHNYKVAGDYLRAFQVSback to top mRNA from alignment at H-canaliculatus_M_contigs832:8358..10436+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs832.5.1 ID=mRNA_H-canaliculatus_M_contigs832.5.1|Name=mRNA_H-canaliculatus_M_contigs832.5.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2079bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs832:8358..10436+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs832:8358..10436+ >mRNA_H-canaliculatus_M_contigs832.5.1 ID=mRNA_H-canaliculatus_M_contigs832.5.1|Name=mRNA_H-canaliculatus_M_contigs832.5.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=447bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs832:8358..10436+ (Hapterophycus canaliculatus Oshoro7m male)back to top |