mRNA_H-canaliculatus_M_contigs832.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs832.3.1
Unique NamemRNA_H-canaliculatus_M_contigs832.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs832.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY4_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.080e-49
Identity = 120/235 (51.06%), Postives = 136/235 (57.87%), Query Frame = 3 
Query:  153 MGSTRGCLPPLEGNHRRGNLDSSGSSYSNELDTRTAIITDRSGDTMSDLHTKMAHIQWRKHANDKSIRRALETTKRLHERDMMLQLSVDREGERERWTESIVRDELARPAEISEMFLKDWEQRAKETRKRQLKEAKLHLESLKRVERVVNSKQRSGTGSMTTKTEISESSDTEVAVEGGHGSDQGEDAEPLTKKLRRLRVRVKEKRRQLRRSATSLNELRGTFSATSFKTGRGRC 857
            MGS    LPPLEGN R    D  GSS  N      +II   SGD +SDLHTK+AHIQWR+HANDKSIR+ALETTKRL ERDMMLQLSVDREGE                                          KLHL+SLKRVER V SK+ S   +     +  ES D E    G    +Q ED E L ++LRR+RV VKEKRR+LRRSA+   + RGTFSAT FKTGRGRC
Sbjct:    1 MGSVYRALPPLEGNRRCRPQDEFGSSRENV--PPRSIIVSGSGDALSDLHTKLAHIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGE-----------------------------------------TKLHLKSLKRVERTVTSKKCSAITA-----QRPESRDAEGRGGGERALEQQEDDEALKERLRRVRVGVKEKRRELRRSASYSKDQRGTFSATGFKTGRGRC 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs832.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.080e-4951.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs832contigH-canaliculatus_M_contigs832:5764..7994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008611104.1
Model size1265
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.19e-05
EggNOG OGs2E1SB@1|root,2S92E@2759|Eukaryota
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_010000.1
Cds size714
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs832.3.1prot_H-canaliculatus_M_contigs832.3.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs832 6169..7848 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854147.3466055-UTR-H-canaliculatus_M_contigs832:5763..61681696854147.3466055-UTR-H-canaliculatus_M_contigs832:5763..6168Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs832 5764..6168 -
1696854147.4224896-UTR-H-canaliculatus_M_contigs832:7848..79941696854147.4224896-UTR-H-canaliculatus_M_contigs832:7848..7994Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs832 7849..7994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854147.3634167-CDS-H-canaliculatus_M_contigs832:6168..64771696854147.3634167-CDS-H-canaliculatus_M_contigs832:6168..6477Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs832 6169..6477 -
1696854147.3780987-CDS-H-canaliculatus_M_contigs832:6914..70371696854147.3780987-CDS-H-canaliculatus_M_contigs832:6914..7037Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs832 6915..7037 -
1696854147.3938596-CDS-H-canaliculatus_M_contigs832:7217..72901696854147.3938596-CDS-H-canaliculatus_M_contigs832:7217..7290Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs832 7218..7290 -
1696854147.409029-CDS-H-canaliculatus_M_contigs832:7639..78481696854147.409029-CDS-H-canaliculatus_M_contigs832:7639..7848Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs832 7640..7848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs832.3.1

>prot_H-canaliculatus_M_contigs832.3.1 ID=prot_H-canaliculatus_M_contigs832.3.1|Name=mRNA_H-canaliculatus_M_contigs832.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=238bp
MPMGSTRGCLPPLEGNHRRGNLDSSGSSYSNELDTRTAIITDRSGDTMSD
LHTKMAHIQWRKHANDKSIRRALETTKRLHERDMMLQLSVDREGERERWT
ESIVRDELARPAEISEMFLKDWEQRAKETRKRQLKEAKLHLESLKRVERV
VNSKQRSGTGSMTTKTEISESSDTEVAVEGGHGSDQGEDAEPLTKKLRRL
RVRVKEKRRQLRRSATSLNELRGTFSATSFKTGRGRC*
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mRNA from alignment at H-canaliculatus_M_contigs832:5764..7994-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs832.3.1 ID=mRNA_H-canaliculatus_M_contigs832.3.1|Name=mRNA_H-canaliculatus_M_contigs832.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2231bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs832:5764..7994- (Hapterophycus canaliculatus Oshoro7m male)
GCGACGGCTGTGGTTGCGGCAAGGGCAGAGGGAGAGAGAGAAAGAGGGAG
AGGGAGCAGACAAAGTCGTAGAGCCGCAAGGGCACAGCGAGTCAGAGAAA
TATCAGCAAAAAAGAAGAGCTGCTCCGCGAGGTCAGCACCAACTTCATGC
CGATGGGCTCTACGCGGGGATGCCTTCCACCCTTAGAGGGCAACCACCGA
CGCGGTAATCTGGACAGCAGCGGCAGTTCTTACAGCAATGAGCTCGATAC
GAGAACGGCTATCATTACCGATAGGAGTGGCGATACGATGAGCGACCTGC
ACACTAAAATGGCCCATATTCAATGGCGAAAGCACGCGAACGACAAGAGC
ATACGGTAAGAATCTGTGCGTGCTGATGTTCATTCCTTACAGTATATACA
GCAGTAACGCGAGCTGTTTCGTCCACGTCGGTGCTATCGATTGCGATGAA
AGCTATGCAATAACCCTCCTGCGCATGTCTTATTGCACCGTAATAACCTT
GACCTGGCCGGCGTCTTCTTAAATTGCTACTGTAAACTACGAAGCAGTAC
CGGCGGTTGGTACGGGGCGCATTATTTCCCGATGGGTTGAGTTTCTGTCT
TCGAAAGTAATACAGTATTACGAAAATCTCTCCACCCTCGAAAATCCGTG
ATTGTGCAACTTGCTTCGCGTGTTTGTTCTGATCGCCTACGCTCTGTATG
GCAGGAGAGCACTTGAAACCACAAAACGCCTGCACGAGCGCGACATGATG
CTTCAGCTCTCTGTCGACCGCGAAGGGGTGAGACTTGCACCACGCCTTCT
TTCCGTGGTAAAGGTGCCTCTTCCGACGGGGACCGCAGATTGATACCTTG
GATGGATAAAATAAGTACAGTAAACATGCAAAGAAAAAAAAAATAACGGA
CCATTACCTTCGCTCTTCGTTGGTTGCTTGGTTTCAATAACGATCGGCGA
TCACAAGGAAAGAGAGCGGTGGACGGAGTCGATCGTGAGAGACGAGCTCG
CGCGGCCAGCCGAGATCAGTGAGATGTTTTTGAAGGATTGGGAACAGCGA
GCAAAAGAGACCCGAAAGAGGCAGCTGAAGGTATGGCACTTGGTTGTGTG
AAACAACAAGTAAGTGTGGCAGCTTGAAAAATATGATATGCTTCGAATTC
CGTTGGTTGTACAAGTAGACGGTGGAGCCCTTAGGCACTGTCAGATATTT
GTCGTGGTGCACGCAGAGATGCGGTAAACAAACGTGATGTTTCATGAGTT
TTCCTTTGGTCTGGCGACACGAGCAAGCGATAATTCGTCCATAATCGTCG
AACCCACATAATCTCCTGCTGGGCACACTGGAAAGGGGGCGCGGGGCACA
TGTCACCATAGGACCCGACCTCGAGGTGCAATCTACCGTAGCAGTGAATG
ATCTCTGTGTAAGGTAGCAGACTTCGCCTGATATGCTATTTGACTAGAAA
GCGTGCACGTGTACGGAAAAAAATGCGCCACGCCGAGTTTGTCCTCTTCC
ACGTGTGAACTCCGCAGGAGGCGAAGCTTCACCTGGAAAGTCTTAAACGT
GTAGAACGAGTGGTGAACTCGAAGCAGCGCAGTGGGACTGGAAGCATGAC
AACCAAGACGGAGATATCTGAAAGCAGCGATACCGAGGTGGCCGTTGAAG
GAGGGCACGGTTCGGATCAGGGAGAAGACGCCGAGCCCTTGACAAAGAAG
CTGCGAAGGTTACGCGTTAGGGTCAAGGAGAAGCGCAGACAACTGCGCCG
AAGTGCGACGTCGTTGAACGAGCTTAGAGGGACGTTTAGCGCCACTAGCT
TTAAGACTGGACGAGGCCGATGCTGATAGTAATGGAAAAGATCGTGAAAA
TGTCGACTTTGTTGGTGGCTGATTTCATGCGACTCTCCTGAACGATGGGT
TTTAAAACATCGGAGATACTCAACGGGCATTCATACACGATGGAGAATCT
ATCGTTTATGTTTCCTGGATGATCTAGTCGCAAACTGTTGCAGGAGGCTG
CTACAATTTGTGTCACACGCCGTTCCGGAGCAGGAACCCTCGCGTTTTGG
GCTTTGTAGCTGGCAAGAGATATGTACGGTTGTGTACTCGAATACAGGGC
AACCAGAATCTCGACAACGAGGTCTCACGCTGCTCACAAGTTGCCTTTGT
TCAAGCACCAACTCCTACCACGTATCCTTGAAAATGGTCAAGTATCCCGG
GGTTGCGCGTCTTTGACCCTCTAGCCCCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs832:5764..7994-

>mRNA_H-canaliculatus_M_contigs832.3.1 ID=mRNA_H-canaliculatus_M_contigs832.3.1|Name=mRNA_H-canaliculatus_M_contigs832.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs832:5764..7994- (Hapterophycus canaliculatus Oshoro7m male)
ATGCCGATGGGCTCTACGCGGGGATGCCTTCCACCCTTAGAGGGCAACCA
CCGACGCGGTAATCTGGACAGCAGCGGCAGTTCTTACAGCAATGAGCTCG
ATACGAGAACGGCTATCATTACCGATAGGAGTGGCGATACGATGAGCGAC
CTGCACACTAAAATGGCCCATATTCAATGGCGAAAGCACGCGAACGACAA
GAGCATACGGAGAGCACTTGAAACCACAAAACGCCTGCACGAGCGCGACA
TGATGCTTCAGCTCTCTGTCGACCGCGAAGGGGAAAGAGAGCGGTGGACG
GAGTCGATCGTGAGAGACGAGCTCGCGCGGCCAGCCGAGATCAGTGAGAT
GTTTTTGAAGGATTGGGAACAGCGAGCAAAAGAGACCCGAAAGAGGCAGC
TGAAGGAGGCGAAGCTTCACCTGGAAAGTCTTAAACGTGTAGAACGAGTG
GTGAACTCGAAGCAGCGCAGTGGGACTGGAAGCATGACAACCAAGACGGA
GATATCTGAAAGCAGCGATACCGAGGTGGCCGTTGAAGGAGGGCACGGTT
CGGATCAGGGAGAAGACGCCGAGCCCTTGACAAAGAAGCTGCGAAGGTTA
CGCGTTAGGGTCAAGGAGAAGCGCAGACAACTGCGCCGAAGTGCGACGTC
GTTGAACGAGCTTAGAGGGACGTTTAGCGCCACTAGCTTTAAGACTGGAC
GAGGCCGATGCTGA
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