mRNA_H-canaliculatus_M_contigs831.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs831.1.1
Unique NamemRNA_H-canaliculatus_M_contigs831.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs831.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs831contigH-canaliculatus_M_contigs831:1241..2207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size588
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_010820.1
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854146.5800228-UTR-H-canaliculatus_M_contigs831:1240..12611696854146.5800228-UTR-H-canaliculatus_M_contigs831:1240..1261Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs831 1241..1261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854146.595403-CDS-H-canaliculatus_M_contigs831:1261..13291696854146.595403-CDS-H-canaliculatus_M_contigs831:1261..1329Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs831 1262..1329 +
1696854146.6064155-CDS-H-canaliculatus_M_contigs831:1475..18861696854146.6064155-CDS-H-canaliculatus_M_contigs831:1475..1886Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs831 1476..1886 +
1696854146.628344-CDS-H-canaliculatus_M_contigs831:2119..22071696854146.628344-CDS-H-canaliculatus_M_contigs831:2119..2207Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs831 2120..2207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs831.1.1prot_H-canaliculatus_M_contigs831.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs831 1262..2207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs831.1.1

>prot_H-canaliculatus_M_contigs831.1.1 ID=prot_H-canaliculatus_M_contigs831.1.1|Name=mRNA_H-canaliculatus_M_contigs831.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=189bp
MARVGECGARSNTRVKNRESRETLYARALSLRKTHLITRALWLVDGIVQR
LDPLGDYETRTHGSEVNREVRSSRVAAPSREVQRLKPYPAQHAEYLGIPV
MPRNPFRDEMSFRSRAKGVQYCKAASRSGVLASCRGYSSSRTYLDFVEVR
AAASKKGRFRNWLRKSYARVLDSGSVRFYAVQHVGPVR*
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mRNA from alignment at H-canaliculatus_M_contigs831:1241..2207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs831.1.1 ID=mRNA_H-canaliculatus_M_contigs831.1.1|Name=mRNA_H-canaliculatus_M_contigs831.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=967bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs831:1241..2207+ (Hapterophycus canaliculatus Oshoro7m male)
CAGTCATACGAAACGGGGTGCATGGCACGGGTCGGAGAATGCGGTGCACG
AAGCAACACGCGAGTGAAGAATCGCGAATCACGAGAAACGTGAGGGCCCA
AGCCAACGATGTCAAAAATGTGAACGGAAACATTTGGCCAAACCTACTTA
AAATGCGTACTGTAGCCGTTAGAAACCCGGCCGGGGGAGATTCGAACTTG
CGCATCCACGTCGCCAAATACATTACCTTGCCCAGGTTGTACGCAAGAGC
ACTGTCTCTGCGCAAGACGCATCTCATCACGCGTGCTCTGTGGCTCGTTG
ACGGAATCGTCCAACGCTTGGATCCTCTGGGAGATTATGAAACGCGCACA
CATGGTTCAGAAGTAAACAGGGAAGTTCGATCCTCGCGGGTTGCGGCACC
GTCTCGAGAGGTGCAGCGGCTGAAACCGTACCCGGCACAACACGCGGAAT
ACCTCGGAATCCCTGTGATGCCGCGAAATCCTTTCAGGGATGAAATGAGT
TTTCGGTCTCGCGCGAAAGGTGTACAGTACTGCAAGGCCGCATCCCGCTC
GGGGGTGCTGGCTAGTTGCAGAGGATATTCCTCTAGTCGAACCTACCTTG
ATTTCGTCGAAGTCAGGGCAGCAGCATCGAAAAAAGGCCGATTCAGGTAC
GCCGCCCGATGGCATGAGATCGCGATGCTCCATCGCTTGCTTGAGACAGG
ATCCAATCGGAGGCCAGCAAGGAAAACGTTGGACATCCTTCACCGGGCTT
TGAGAGGTGGGACTCCTTGGAAAGGCGTTATTCTTGCCGACCGTTTTAAG
AAGACATGAACTCTGAGCACTGCTTCGATGTCGCTAAATTCGGGCTGTCT
GCTGTTCTGCTTCGCGTCGTCGAAACCAGAAACTGGTTGCGAAAATCCTA
CGCCAGGGTGCTTGACTCGGGATCAGTTCGTTTCTACGCTGTCCAGCACG
TTGGACCAGTGCGATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs831:1241..2207+

>mRNA_H-canaliculatus_M_contigs831.1.1 ID=mRNA_H-canaliculatus_M_contigs831.1.1|Name=mRNA_H-canaliculatus_M_contigs831.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=567bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs831:1241..2207+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCACGGGTCGGAGAATGCGGTGCACGAAGCAACACGCGAGTGAAGAA
TCGCGAATCACGAGAAACGTTGTACGCAAGAGCACTGTCTCTGCGCAAGA
CGCATCTCATCACGCGTGCTCTGTGGCTCGTTGACGGAATCGTCCAACGC
TTGGATCCTCTGGGAGATTATGAAACGCGCACACATGGTTCAGAAGTAAA
CAGGGAAGTTCGATCCTCGCGGGTTGCGGCACCGTCTCGAGAGGTGCAGC
GGCTGAAACCGTACCCGGCACAACACGCGGAATACCTCGGAATCCCTGTG
ATGCCGCGAAATCCTTTCAGGGATGAAATGAGTTTTCGGTCTCGCGCGAA
AGGTGTACAGTACTGCAAGGCCGCATCCCGCTCGGGGGTGCTGGCTAGTT
GCAGAGGATATTCCTCTAGTCGAACCTACCTTGATTTCGTCGAAGTCAGG
GCAGCAGCATCGAAAAAAGGCCGATTCAGAAACTGGTTGCGAAAATCCTA
CGCCAGGGTGCTTGACTCGGGATCAGTTCGTTTCTACGCTGTCCAGCACG
TTGGACCAGTGCGATAG
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